Wall clock time and date at job start Tue Mar 31 2020 05:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31295 * 1 3 3 Si 1.86803 * 119.99628 * 2 1 4 4 H 1.48494 * 109.47248 * 274.97699 * 3 2 1 5 5 H 1.48500 * 109.47261 * 34.98183 * 3 2 1 6 6 H 1.48504 * 109.47046 * 154.98220 * 3 2 1 7 7 C 1.38989 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99724 * 174.03891 * 7 2 1 9 9 N 1.37314 * 119.99795 * 354.31110 * 7 2 1 10 10 C 1.36496 * 126.06526 * 185.48951 * 9 7 2 11 11 C 1.35703 * 107.50347 * 179.97438 * 10 9 7 12 12 N 1.40503 * 126.08569 * 179.97438 * 11 10 9 13 13 C 1.34775 * 119.99712 * 179.97438 * 12 11 10 14 14 O 1.21725 * 120.00551 * 0.02562 * 13 12 11 15 15 C 1.46403 * 119.99832 * 179.97438 * 13 12 11 16 16 C 1.34817 * 120.00119 * 180.02562 * 15 13 12 17 17 C 1.47209 * 120.00151 * 180.02562 * 16 15 13 18 18 C 1.39835 * 120.16611 * 359.73339 * 17 16 15 19 19 C 1.37891 * 119.82271 * 179.67612 * 18 17 16 20 20 C 1.38408 * 120.17000 * 0.61406 * 19 18 17 21 21 C 1.38402 * 120.34478 * 359.67808 * 20 19 18 22 22 C 1.37894 * 120.17207 * 0.02562 * 21 20 19 23 23 C 1.40680 * 107.82861 * 359.97438 * 11 10 9 24 24 N 1.30898 * 108.38371 * 359.75514 * 23 11 10 25 25 H 0.96997 * 120.00133 * 359.97438 * 1 2 3 26 26 H 1.07998 * 126.24828 * 359.94188 * 10 9 7 27 27 H 0.96994 * 119.99894 * 359.97438 * 12 11 10 28 28 H 1.08000 * 119.99892 * 0.02562 * 15 13 12 29 29 H 1.08000 * 119.99989 * 0.02562 * 16 15 13 30 30 H 1.07997 * 120.08945 * 359.96313 * 18 17 16 31 31 H 1.07995 * 119.91642 * 180.31287 * 19 18 17 32 32 H 1.08000 * 119.82943 * 179.69706 * 20 19 18 33 33 H 1.07998 * 119.91634 * 180.02562 * 21 20 19 34 34 H 1.08000 * 120.08719 * 180.02562 * 22 21 20 35 35 H 1.08000 * 125.80750 * 180.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.3891 2.1073 -1.3947 5 1 1.5009 2.6200 0.8027 6 1 3.5931 1.4122 0.5921 7 6 2.0079 -1.2037 0.0005 8 1 3.0835 -1.2061 -0.0966 9 7 1.3265 -2.3898 0.1190 10 6 1.8855 -3.6293 0.2391 11 6 0.8720 -4.5270 0.3307 12 7 1.0091 -5.9187 0.4667 13 6 -0.0869 -6.6990 0.5476 14 8 -1.1954 -6.1982 0.5024 15 6 0.0559 -8.1492 0.6887 16 6 -1.0404 -8.9298 0.7691 17 6 -0.8968 -10.3880 0.9116 18 6 0.3749 -10.9676 0.9583 19 6 0.5011 -12.3336 1.0986 20 6 -0.6267 -13.1316 1.1804 21 6 -1.8888 -12.5659 1.1288 22 6 -2.0315 -11.2010 0.9948 23 6 -0.3402 -3.8162 0.2653 24 7 -0.0657 -2.5421 0.1447 25 1 -0.4850 0.8400 0.0004 26 1 2.9416 -3.8544 0.2573 27 1 1.8924 -6.3179 0.5023 28 1 1.0394 -8.5937 0.7284 29 1 -2.0239 -8.4854 0.7290 30 1 1.2558 -10.3467 0.8893 31 1 1.4826 -12.7823 1.1399 32 1 -0.5214 -14.2013 1.2853 33 1 -2.7642 -13.1952 1.1936 34 1 -3.0170 -10.7609 0.9551 35 1 -1.3291 -4.2480 0.3115 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139707531.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:37 Heat of formation + Delta-G solvation = 91.073735 kcal Electronic energy + Delta-G solvation = -19812.261084 eV Core-core repulsion = 16584.593042 eV Total energy + Delta-G solvation = -3227.668042 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.91829 -39.38805 -38.46017 -34.36760 -33.92181 -33.11847 -31.24580 -30.31631 -29.72109 -27.72200 -25.14889 -23.99539 -22.82096 -21.49270 -20.76799 -19.42669 -19.13026 -17.76813 -17.13574 -16.48346 -15.55898 -15.41755 -15.18551 -14.83897 -14.44467 -14.08204 -13.83804 -13.59573 -13.31331 -13.24276 -13.05126 -12.83335 -12.14478 -11.68528 -11.45297 -11.40719 -11.26089 -11.13779 -10.93905 -10.52201 -10.47615 -10.09841 -9.21829 -9.21744 -9.14484 -8.78896 -8.40076 -8.03717 -6.66070 -6.55209 -4.20992 0.46113 1.15609 1.97339 2.95734 3.05804 3.11286 3.36352 3.65252 3.65601 3.88120 3.90833 4.49750 4.56275 4.58619 4.70039 4.79695 4.91337 5.02474 5.12013 5.17441 5.22206 5.43161 5.69926 5.76259 5.97788 6.10764 6.23603 6.25287 6.32805 6.52537 6.53530 6.71290 6.93826 6.99207 7.16108 7.26475 7.87700 8.21992 8.31101 8.65607 8.90112 9.39567 9.68711 10.41102 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.066934 B = 0.002512 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.221748 B =11143.495941 C =11547.634553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.323 4.323 8 H 0.116 0.884 9 N -0.143 5.143 10 C -0.084 4.084 11 C -0.060 4.060 12 N -0.617 5.617 13 C 0.526 3.474 14 O -0.541 6.541 15 C -0.186 4.186 16 C -0.043 4.043 17 C -0.064 4.064 18 C -0.107 4.107 19 C -0.122 4.122 20 C -0.118 4.118 21 C -0.123 4.123 22 C -0.100 4.100 23 C -0.031 4.031 24 N -0.262 5.262 25 H 0.275 0.725 26 H 0.146 0.854 27 H 0.397 0.603 28 H 0.125 0.875 29 H 0.137 0.863 30 H 0.128 0.872 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.350 -20.771 2.037 21.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.134 0.866 9 N 0.090 4.910 10 C -0.235 4.235 11 C -0.166 4.166 12 N -0.257 5.257 13 C 0.314 3.686 14 O -0.421 6.421 15 C -0.207 4.207 16 C -0.063 4.063 17 C -0.064 4.064 18 C -0.125 4.125 19 C -0.140 4.140 20 C -0.136 4.136 21 C -0.141 4.141 22 C -0.118 4.118 23 C -0.207 4.207 24 N -0.093 5.093 25 H 0.085 0.915 26 H 0.163 0.837 27 H 0.230 0.770 28 H 0.143 0.857 29 H 0.155 0.845 30 H 0.146 0.854 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.896 -19.047 1.890 19.161 hybrid contribution 1.388 -0.422 0.092 1.454 sum 2.284 -19.469 1.982 19.703 Atomic orbital electron populations 1.70224 1.06164 1.27977 1.35212 1.25651 0.95689 1.00288 0.95495 0.85821 0.79503 0.80058 0.78821 1.19672 1.20043 1.18750 1.19868 0.92120 0.80702 1.52867 0.86618 1.44552 1.04019 1.03685 1.38793 1.21275 0.96823 0.85801 1.19585 1.17286 0.94330 0.81747 1.23238 1.42415 1.08221 1.05221 1.69886 1.18110 0.84559 0.86680 0.79204 1.90704 1.25411 1.75025 1.50968 1.22986 0.99520 0.93294 1.04933 1.22296 0.99848 0.90739 0.93453 1.19116 0.93474 0.92909 1.00880 1.21465 0.96891 0.95140 0.98975 1.21102 0.98804 0.93678 1.00406 1.21279 0.92679 0.99871 0.99756 1.21108 0.97539 0.94944 1.00486 1.21416 0.98251 0.93572 0.98572 1.24145 0.98084 0.90845 1.07635 1.78243 0.90268 1.15120 1.25624 0.91469 0.83668 0.76951 0.85698 0.84522 0.85429 0.85848 0.86090 0.85843 0.85415 0.80644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.72 11.83 55.50 0.66 -21.07 16 2 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 3 Si 0.93 19.05 29.56 -169.99 -5.02 14.02 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 7 C -0.32 -8.64 10.24 -14.82 -0.15 -8.79 16 8 H 0.12 2.75 7.84 -52.49 -0.41 2.34 16 9 N -0.14 -3.98 3.74 -11.41 -0.04 -4.02 16 10 C -0.08 -2.00 11.49 -16.38 -0.19 -2.19 16 11 C -0.06 -1.42 6.90 -83.87 -0.58 -2.00 16 12 N -0.62 -11.23 5.46 -11.26 -0.06 -11.29 16 13 C 0.53 9.51 7.71 -12.98 -0.10 9.41 16 14 O -0.54 -11.94 13.37 5.17 0.07 -11.88 16 15 C -0.19 -2.43 9.41 -37.51 -0.35 -2.79 16 16 C -0.04 -0.54 9.46 -37.15 -0.35 -0.89 16 17 C -0.06 -0.68 5.87 -105.06 -0.62 -1.30 16 18 C -0.11 -1.00 9.41 -39.11 -0.37 -1.36 16 19 C -0.12 -0.99 10.03 -39.65 -0.40 -1.38 16 20 C -0.12 -0.91 10.04 -39.46 -0.40 -1.30 16 21 C -0.12 -1.00 10.03 -39.65 -0.40 -1.39 16 22 C -0.10 -0.94 9.80 -39.11 -0.38 -1.33 16 23 C -0.03 -0.85 10.85 -17.03 -0.18 -1.03 16 24 N -0.26 -7.74 10.41 30.81 0.32 -7.42 16 25 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.15 2.87 8.06 -52.49 -0.42 2.45 16 27 H 0.40 5.49 8.80 -40.82 -0.36 5.13 16 28 H 0.13 1.21 6.07 -52.49 -0.32 0.89 16 29 H 0.14 1.80 7.52 -52.49 -0.39 1.41 16 30 H 0.13 1.00 6.17 -52.49 -0.32 0.67 16 31 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 32 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 33 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.18 4.70 5.91 -52.49 -0.31 4.39 16 LS Contribution 313.34 15.07 4.72 4.72 Total: -1.00 -34.35 313.34 -7.29 -41.64 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -3.37 Total: 10.54 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -4.56 Total: -15.24 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 0.87 Total: -43.80 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.07 Total: -11.88 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.02 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.35 -7.29 -41.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139707531.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.711 kcal (2) G-P(sol) polarization free energy of solvation -34.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds