Wall clock time and date at job start Tue Mar 31 2020 05:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31295 * 1 3 3 Si 1.86803 * 119.99628 * 2 1 4 4 H 1.48494 * 109.47248 * 274.97699 * 3 2 1 5 5 H 1.48500 * 109.47261 * 34.98183 * 3 2 1 6 6 H 1.48504 * 109.47046 * 154.98220 * 3 2 1 7 7 C 1.38989 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99724 * 174.03891 * 7 2 1 9 9 N 1.37314 * 119.99795 * 354.31110 * 7 2 1 10 10 C 1.36496 * 126.06526 * 185.48951 * 9 7 2 11 11 C 1.35703 * 107.50347 * 179.97438 * 10 9 7 12 12 N 1.40503 * 126.08569 * 179.97438 * 11 10 9 13 13 C 1.34775 * 119.99712 * 179.97438 * 12 11 10 14 14 O 1.21725 * 120.00551 * 0.02562 * 13 12 11 15 15 C 1.46403 * 119.99832 * 179.97438 * 13 12 11 16 16 C 1.34817 * 120.00119 * 180.02562 * 15 13 12 17 17 C 1.47209 * 120.00151 * 180.02562 * 16 15 13 18 18 C 1.39835 * 120.16611 * 359.73339 * 17 16 15 19 19 C 1.37891 * 119.82271 * 179.67612 * 18 17 16 20 20 C 1.38408 * 120.17000 * 0.61406 * 19 18 17 21 21 C 1.38402 * 120.34478 * 359.67808 * 20 19 18 22 22 C 1.37894 * 120.17207 * 0.02562 * 21 20 19 23 23 C 1.40680 * 107.82861 * 359.97438 * 11 10 9 24 24 N 1.30898 * 108.38371 * 359.75514 * 23 11 10 25 25 H 0.96997 * 120.00133 * 359.97438 * 1 2 3 26 26 H 1.07998 * 126.24828 * 359.94188 * 10 9 7 27 27 H 0.96994 * 119.99894 * 359.97438 * 12 11 10 28 28 H 1.08000 * 119.99892 * 0.02562 * 15 13 12 29 29 H 1.08000 * 119.99989 * 0.02562 * 16 15 13 30 30 H 1.07997 * 120.08945 * 359.96313 * 18 17 16 31 31 H 1.07995 * 119.91642 * 180.31287 * 19 18 17 32 32 H 1.08000 * 119.82943 * 179.69706 * 20 19 18 33 33 H 1.07998 * 119.91634 * 180.02562 * 21 20 19 34 34 H 1.08000 * 120.08719 * 180.02562 * 22 21 20 35 35 H 1.08000 * 125.80750 * 180.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.3891 2.1073 -1.3947 5 1 1.5009 2.6200 0.8027 6 1 3.5931 1.4122 0.5921 7 6 2.0079 -1.2037 0.0005 8 1 3.0835 -1.2061 -0.0966 9 7 1.3265 -2.3898 0.1190 10 6 1.8855 -3.6293 0.2391 11 6 0.8720 -4.5270 0.3307 12 7 1.0091 -5.9187 0.4667 13 6 -0.0869 -6.6990 0.5476 14 8 -1.1954 -6.1982 0.5024 15 6 0.0559 -8.1492 0.6887 16 6 -1.0404 -8.9298 0.7691 17 6 -0.8968 -10.3880 0.9116 18 6 0.3749 -10.9676 0.9583 19 6 0.5011 -12.3336 1.0986 20 6 -0.6267 -13.1316 1.1804 21 6 -1.8888 -12.5659 1.1288 22 6 -2.0315 -11.2010 0.9948 23 6 -0.3402 -3.8162 0.2653 24 7 -0.0657 -2.5421 0.1447 25 1 -0.4850 0.8400 0.0004 26 1 2.9416 -3.8544 0.2573 27 1 1.8924 -6.3179 0.5023 28 1 1.0394 -8.5937 0.7284 29 1 -2.0239 -8.4854 0.7290 30 1 1.2558 -10.3467 0.8893 31 1 1.4826 -12.7823 1.1399 32 1 -0.5214 -14.2013 1.2853 33 1 -2.7642 -13.1952 1.1936 34 1 -3.0170 -10.7609 0.9551 35 1 -1.3291 -4.2480 0.3115 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139707531.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:36 Heat of formation + Delta-G solvation = 69.036480 kcal Electronic energy + Delta-G solvation = -19813.216691 eV Core-core repulsion = 16584.593042 eV Total energy + Delta-G solvation = -3228.623649 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.70542 -40.40518 -39.81039 -35.97882 -35.01512 -34.92902 -32.27266 -31.87991 -30.77920 -29.45052 -26.94288 -25.16226 -23.54464 -22.92822 -22.35569 -21.25083 -20.32376 -19.39083 -18.26122 -17.63594 -17.36234 -16.86795 -16.12584 -16.05210 -15.92049 -15.50211 -15.05111 -14.99531 -14.84959 -14.27549 -14.21545 -13.86948 -13.49276 -13.31825 -13.07148 -12.92705 -12.83506 -12.12933 -12.07496 -11.86244 -11.80407 -11.30844 -11.01824 -10.85839 -10.74270 -10.10793 -9.85342 -9.24010 -8.49972 -8.47590 -6.24259 -0.41231 0.52216 1.00681 1.31850 1.39975 1.58464 1.75060 2.06870 2.13042 2.34841 2.67255 2.93230 3.01271 3.08447 3.71487 3.86334 4.10187 4.18673 4.25642 4.38989 4.43742 4.55731 4.58702 4.63519 4.99383 5.00851 5.02439 5.11868 5.20896 5.28066 5.36564 5.48458 5.59457 5.61801 5.71458 5.96076 6.08254 6.31675 6.73196 6.78506 7.40623 7.47363 7.67742 8.52123 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.066934 B = 0.002512 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.221748 B =11143.495941 C =11547.634553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C -0.008 4.008 3 Si 1.021 2.979 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.242 1.242 7 C -0.354 4.354 8 H 0.142 0.858 9 N -0.168 5.168 10 C -0.080 4.080 11 C -0.046 4.046 12 N -0.609 5.609 13 C 0.524 3.476 14 O -0.589 6.589 15 C -0.198 4.198 16 C -0.023 4.023 17 C -0.091 4.091 18 C -0.110 4.110 19 C -0.128 4.128 20 C -0.113 4.113 21 C -0.130 4.130 22 C -0.111 4.111 23 C -0.061 4.061 24 N -0.312 5.312 25 H 0.276 0.724 26 H 0.191 0.809 27 H 0.422 0.578 28 H 0.166 0.834 29 H 0.119 0.881 30 H 0.143 0.857 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.131 0.869 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.089 -23.207 2.349 23.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.220 4.220 3 Si 0.839 3.161 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.165 1.165 7 C -0.485 4.485 8 H 0.160 0.840 9 N 0.063 4.937 10 C -0.230 4.230 11 C -0.152 4.152 12 N -0.253 5.253 13 C 0.316 3.684 14 O -0.472 6.472 15 C -0.218 4.218 16 C -0.043 4.043 17 C -0.091 4.091 18 C -0.127 4.127 19 C -0.146 4.146 20 C -0.131 4.131 21 C -0.148 4.148 22 C -0.129 4.129 23 C -0.237 4.237 24 N -0.144 5.144 25 H 0.086 0.914 26 H 0.208 0.792 27 H 0.259 0.741 28 H 0.183 0.817 29 H 0.137 0.863 30 H 0.161 0.839 31 H 0.166 0.834 32 H 0.165 0.835 33 H 0.163 0.837 34 H 0.149 0.851 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.676 -21.551 2.205 21.973 hybrid contribution 0.444 0.000 0.015 0.444 sum 4.120 -21.551 2.220 22.053 Atomic orbital electron populations 1.70409 1.08530 1.29132 1.37269 1.26930 0.96470 1.04467 0.94114 0.84564 0.78492 0.74012 0.79025 1.18918 1.20241 1.16533 1.20639 0.93443 0.80984 1.53438 0.84042 1.44860 1.03562 1.05243 1.40053 1.22027 0.98836 0.84525 1.17621 1.17371 0.92838 0.84216 1.20819 1.42336 1.09858 1.03004 1.70082 1.18983 0.83586 0.88644 0.77235 1.90686 1.27324 1.76341 1.52816 1.22813 1.01645 0.89798 1.07590 1.22383 0.98968 0.92128 0.90869 1.19093 0.94818 0.91635 1.03570 1.21716 0.96660 0.96126 0.98247 1.21459 1.00231 0.93227 0.99676 1.21704 0.92306 1.01357 0.97733 1.21416 0.98867 0.94512 1.00010 1.21630 0.98295 0.94468 0.98486 1.24181 0.99095 0.91121 1.09262 1.78134 0.92270 1.16533 1.27438 0.91389 0.79248 0.74073 0.81699 0.86335 0.83931 0.83360 0.83461 0.83748 0.85073 0.81689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.53 11.83 21.66 0.26 -48.28 16 2 C -0.01 -0.44 5.50 84.95 0.47 0.03 16 3 Si 1.02 38.99 29.56 68.60 2.03 41.02 16 4 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 5 H -0.28 -10.54 7.11 99.48 0.71 -9.83 16 6 H -0.24 -8.34 7.11 99.48 0.71 -7.64 16 7 C -0.35 -18.99 10.24 84.01 0.86 -18.13 16 8 H 0.14 6.54 7.84 -2.91 -0.02 6.51 16 9 N -0.17 -9.53 3.74 -190.00 -0.71 -10.24 16 10 C -0.08 -3.76 11.49 83.38 0.96 -2.80 16 11 C -0.05 -2.18 6.90 37.76 0.26 -1.92 16 12 N -0.61 -21.64 5.46 -307.74 -1.68 -23.32 16 13 C 0.52 19.01 7.71 86.37 0.67 19.67 16 14 O -0.59 -27.16 13.37 -4.43 -0.06 -27.21 16 15 C -0.20 -4.92 9.41 23.61 0.22 -4.70 16 16 C -0.02 -0.57 9.46 23.84 0.23 -0.34 16 17 C -0.09 -1.80 5.87 -20.15 -0.12 -1.92 16 18 C -0.11 -1.73 9.41 22.57 0.21 -1.52 16 19 C -0.13 -1.61 10.03 22.23 0.22 -1.39 16 20 C -0.11 -1.34 10.04 22.35 0.22 -1.12 16 21 C -0.13 -1.78 10.03 22.23 0.22 -1.55 16 22 C -0.11 -1.95 9.80 22.58 0.22 -1.72 16 23 C -0.06 -3.48 10.85 85.43 0.93 -2.55 16 24 N -0.31 -19.34 10.41 -56.45 -0.59 -19.93 16 25 H 0.28 14.91 8.31 -92.71 -0.77 14.14 16 26 H 0.19 6.94 8.06 -2.91 -0.02 6.91 16 27 H 0.42 10.61 8.80 -92.71 -0.82 9.79 16 28 H 0.17 2.67 6.07 -2.91 -0.02 2.65 16 29 H 0.12 3.27 7.52 -2.91 -0.02 3.25 16 30 H 0.14 1.71 6.17 -2.91 -0.02 1.69 16 31 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 32 H 0.15 0.95 8.06 -2.91 -0.02 0.93 16 33 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 34 H 0.13 2.07 8.06 -2.91 -0.02 2.05 16 35 H 0.17 9.51 5.91 -2.91 -0.02 9.49 16 Total: -1.00 -79.79 313.34 5.14 -74.65 By element: Atomic # 1 Polarization: 32.97 SS G_CDS: 0.32 Total: 33.29 kcal Atomic # 6 Polarization: -25.55 SS G_CDS: 5.57 Total: -19.97 kcal Atomic # 7 Polarization: -99.05 SS G_CDS: -2.72 Total: -101.77 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.06 Total: -27.21 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal Total: -79.79 5.14 -74.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139707531.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.691 kcal (2) G-P(sol) polarization free energy of solvation -79.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds