Wall clock time and date at job start Tue Mar 31 2020 05:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42101 * 110.54551 * 2 1 4 4 O 1.42098 * 110.54460 * 223.25168 * 2 1 3 5 5 C 1.76195 * 104.45035 * 111.62561 * 2 1 3 6 6 C 1.38126 * 120.03891 * 114.99699 * 5 2 1 7 7 C 1.38272 * 120.07563 * 179.74534 * 6 5 2 8 8 C 1.38309 * 120.14681 * 0.25962 * 7 6 5 9 9 C 1.38076 * 120.07557 * 359.97438 * 8 7 6 10 10 C 1.38897 * 120.04081 * 295.25609 * 5 2 1 11 11 N 1.39675 * 120.07023 * 0.02562 * 10 5 2 12 12 C 1.46502 * 119.99909 * 180.23352 * 11 10 5 13 13 C 1.53003 * 109.46905 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.46703 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.46783 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00066 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99613 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99745 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00144 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46976 * 90.00013 * 19 17 15 21 21 H 1.48500 * 109.46969 * 210.00006 * 19 17 15 22 22 H 1.48497 * 109.46974 * 329.99936 * 19 17 15 23 23 H 1.09000 * 109.47566 * 308.37582 * 1 2 3 24 24 H 1.09004 * 109.46861 * 68.37729 * 1 2 3 25 25 H 1.09003 * 109.47251 * 188.37268 * 1 2 3 26 26 H 1.08002 * 119.96463 * 0.03087 * 6 5 2 27 27 H 1.07996 * 119.92194 * 180.23481 * 7 6 5 28 28 H 1.07997 * 119.95926 * 179.97438 * 8 7 6 29 29 H 1.08006 * 120.03471 * 180.02562 * 9 8 7 30 30 H 0.96996 * 120.00284 * 0.23158 * 11 10 5 31 31 H 1.09006 * 109.46834 * 299.99981 * 12 11 10 32 32 H 1.08999 * 109.46847 * 59.99695 * 12 11 10 33 33 H 1.09001 * 109.46864 * 299.99472 * 13 12 11 34 34 H 1.08994 * 109.47231 * 60.00291 * 13 12 11 35 35 H 1.08998 * 109.47231 * 300.00225 * 14 13 12 36 36 H 1.09002 * 109.47294 * 59.99775 * 14 13 12 37 37 H 0.96998 * 120.00059 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9691 -0.9117 5 6 2.2536 -0.6288 1.5861 6 6 2.9155 -1.8366 1.6919 7 6 3.2655 -2.3282 2.9360 8 6 2.9498 -1.6156 4.0785 9 6 2.2840 -0.4099 3.9802 10 6 1.9304 0.0868 2.7318 11 7 1.2559 1.3055 2.6288 12 6 0.9202 2.0615 3.8380 13 6 0.1892 3.3480 3.4486 14 6 -0.1619 4.1371 4.7116 15 6 -0.8813 5.4046 4.3281 16 1 -1.0689 5.6253 3.2877 17 6 -1.2990 6.2828 5.3055 18 7 -1.9273 7.3887 4.9709 19 14 -0.9739 5.9012 7.1050 20 1 0.3383 6.4715 7.5026 21 1 -2.0468 6.4993 7.9394 22 1 -0.9548 4.4297 7.3033 23 1 -0.3634 0.6380 0.8056 24 1 -0.3633 0.3787 -0.9554 25 1 -0.3634 -1.0167 0.1496 26 1 3.1639 -2.3953 0.8017 27 1 3.7863 -3.2709 3.0156 28 1 3.2243 -2.0026 5.0487 29 1 2.0381 0.1462 4.8728 30 1 1.0097 1.6514 1.7567 31 1 0.2762 1.4573 4.4771 32 1 1.8347 2.3112 4.3759 33 1 0.8329 3.9523 2.8094 34 1 -0.7253 3.0978 2.9110 35 1 -0.8056 3.5326 5.3505 36 1 0.7525 4.3873 5.2497 37 1 -2.2215 8.0064 5.6584 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265575556.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:35 Heat of formation + Delta-G solvation = -49.511132 kcal Electronic energy + Delta-G solvation = -19867.072145 eV Core-core repulsion = 16736.459086 eV Total energy + Delta-G solvation = -3130.613059 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.69617 -37.38686 -36.26743 -36.06322 -33.78389 -31.95862 -31.32090 -29.74173 -29.32219 -26.70027 -23.84989 -22.99286 -21.47847 -20.47724 -19.14829 -17.98363 -17.18766 -16.78897 -16.40202 -16.18067 -15.23599 -15.17515 -14.82735 -14.39632 -14.16483 -13.95774 -13.65496 -13.41225 -13.26507 -12.74825 -12.52116 -12.28321 -12.18707 -12.09246 -11.99820 -11.61934 -11.26917 -11.10869 -11.04459 -10.64260 -10.36313 -10.08844 -9.89106 -9.78296 -9.43409 -9.29984 -8.61402 -7.74410 -6.11374 -4.10642 -0.08199 0.85062 1.42311 2.74504 3.20291 3.25234 3.32985 3.34379 3.40356 3.73670 4.01372 4.38026 4.53635 4.57307 4.78757 4.87152 5.13357 5.20189 5.21904 5.31834 5.41391 5.45961 5.53839 5.68400 5.80324 5.90183 6.09252 6.26730 6.30972 6.35232 6.63971 6.67882 7.01985 7.12783 7.26260 7.42243 7.69345 8.44928 8.92798 9.50036 11.01937 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.023345 B = 0.003987 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.099609 B = 7021.698303 C = 7997.786158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.498 3.502 3 O -0.936 6.936 4 O -0.944 6.944 5 C -0.739 4.739 6 C 0.020 3.980 7 C -0.205 4.205 8 C -0.021 4.021 9 C -0.212 4.212 10 C 0.308 3.692 11 N -0.738 5.738 12 C 0.112 3.888 13 C -0.118 4.118 14 C -0.009 4.009 15 C -0.524 4.524 16 H 0.072 0.928 17 C 0.067 3.933 18 N -0.901 5.901 19 Si 0.881 3.119 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.266 1.266 23 H 0.130 0.870 24 H 0.134 0.866 25 H 0.135 0.865 26 H 0.140 0.860 27 H 0.125 0.875 28 H 0.126 0.874 29 H 0.132 0.868 30 H 0.398 0.602 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.018 0.982 36 H 0.015 0.985 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.838 -20.754 -5.361 22.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.679 3.321 3 O -0.932 6.932 4 O -0.941 6.941 5 C -0.833 4.833 6 C 0.001 3.999 7 C -0.226 4.226 8 C -0.041 4.041 9 C -0.235 4.235 10 C 0.198 3.802 11 N -0.365 5.365 12 C -0.011 4.011 13 C -0.156 4.156 14 C -0.047 4.047 15 C -0.562 4.562 16 H 0.091 0.909 17 C -0.134 4.134 18 N -0.540 5.540 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.190 1.190 23 H 0.149 0.851 24 H 0.153 0.847 25 H 0.153 0.847 26 H 0.158 0.842 27 H 0.143 0.857 28 H 0.144 0.856 29 H 0.150 0.850 30 H 0.235 0.765 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.037 0.963 36 H 0.033 0.967 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.231 -20.165 -5.753 22.182 hybrid contribution -0.485 -0.126 1.459 1.543 sum 6.746 -20.292 -4.294 21.811 Atomic orbital electron populations 1.30335 1.26124 1.12321 1.12019 1.05058 0.77713 0.74816 0.74539 1.93620 1.76964 1.36363 1.86296 1.93536 1.77483 1.61714 1.61403 1.29672 1.25058 1.10082 1.18440 1.20672 0.89548 0.91053 0.98666 1.20979 1.07156 1.02075 0.92375 1.21193 0.91658 0.92540 0.98660 1.20820 1.07417 0.99256 0.96054 1.17342 0.85831 0.83961 0.93104 1.45624 1.60593 1.19600 1.10650 1.21836 0.99825 0.93504 0.85946 1.21743 0.99275 0.93373 1.01202 1.19496 0.96496 0.95854 0.92869 1.21087 1.36694 1.02953 0.95475 0.90938 1.25034 0.94537 0.94759 0.99106 1.69910 1.39376 1.11018 1.33690 0.86766 0.78132 0.79034 0.85256 1.20218 1.21336 1.19049 0.85137 0.84742 0.84685 0.84185 0.85703 0.85558 0.84987 0.76459 0.91608 0.91574 0.91526 0.92004 0.96342 0.96687 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -5.00 10.56 101.05 1.07 -3.93 16 2 S 2.50 27.87 5.16 -107.50 -0.55 27.32 16 3 O -0.94 -13.78 16.32 -57.54 -0.94 -14.72 16 4 O -0.94 -12.34 16.74 -57.54 -0.96 -13.30 16 5 C -0.74 -8.83 5.59 -39.38 -0.22 -9.05 16 6 C 0.02 0.22 9.50 -39.61 -0.38 -0.16 16 7 C -0.20 -2.00 10.04 -39.54 -0.40 -2.40 16 8 C -0.02 -0.21 10.04 -39.61 -0.40 -0.61 16 9 C -0.21 -2.49 9.31 -39.39 -0.37 -2.86 16 10 C 0.31 3.96 6.59 -83.79 -0.55 3.41 16 11 N -0.74 -9.95 5.19 -58.63 -0.30 -10.26 16 12 C 0.11 1.63 4.91 -4.04 -0.02 1.61 16 13 C -0.12 -2.13 5.27 -26.73 -0.14 -2.28 16 14 C -0.01 -0.21 4.04 -27.88 -0.11 -0.32 16 15 C -0.52 -14.49 9.66 -34.44 -0.33 -14.82 16 16 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 17 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 18 N -0.90 -27.35 13.96 55.43 0.77 -26.57 16 19 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 23 H 0.13 1.01 6.56 -51.92 -0.34 0.67 16 24 H 0.13 0.77 8.14 -51.92 -0.42 0.35 16 25 H 0.13 0.76 8.14 -51.92 -0.42 0.34 16 26 H 0.14 1.33 7.21 -52.49 -0.38 0.95 16 27 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 28 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 29 H 0.13 1.43 6.74 -52.48 -0.35 1.08 16 30 H 0.40 5.15 4.57 -40.82 -0.19 4.96 16 31 H 0.07 0.88 7.95 -51.93 -0.41 0.47 16 32 H 0.07 0.95 7.95 -51.93 -0.41 0.53 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 36 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 317.31 15.07 4.78 4.78 Total: -1.00 -34.68 317.31 -8.80 -43.48 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -4.97 Total: 2.46 kcal Atomic # 6 Polarization: -27.64 SS G_CDS: -1.95 Total: -29.59 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.47 Total: -36.83 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -1.90 Total: -28.02 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Atomic # 16 Polarization: 27.87 SS G_CDS: -0.55 Total: 27.32 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.68 -8.80 -43.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265575556.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.030 kcal (2) G-P(sol) polarization free energy of solvation -34.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds