Wall clock time and date at job start Tue Mar 31 2020 05:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31337 * 1 3 3 Si 1.86795 * 119.99999 * 2 1 4 4 H 1.48494 * 109.47606 * 275.94234 * 3 2 1 5 5 H 1.48499 * 109.47187 * 35.94458 * 3 2 1 6 6 H 1.48505 * 109.46940 * 155.93982 * 3 2 1 7 7 C 1.39091 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99649 * 347.40457 * 7 2 1 9 9 N 1.36815 * 119.99949 * 167.40312 * 7 2 1 10 10 C 1.34781 * 119.99637 * 313.49279 * 9 7 2 11 11 O 1.21595 * 120.00523 * 4.83553 * 10 9 7 12 12 C 1.47723 * 119.99565 * 184.84349 * 10 9 7 13 13 C 1.40680 * 119.76282 * 134.89530 * 12 10 9 14 14 C 1.35701 * 120.82860 * 180.02562 * 13 12 10 15 15 C 1.40737 * 120.09177 * 359.97438 * 14 13 12 16 16 N 1.33774 * 120.84854 * 180.02562 * 15 14 13 17 17 C 1.31350 * 119.76458 * 179.97438 * 16 15 14 18 18 C 1.39738 * 120.71924 * 0.02562 * 17 16 15 19 19 N 1.31284 * 120.67054 * 359.97438 * 18 17 16 20 20 C 1.33840 * 119.73644 * 0.02668 * 19 18 17 21 21 C 1.38518 * 119.76133 * 314.91648 * 12 10 9 22 22 C 1.46499 * 119.99881 * 133.48763 * 9 7 2 23 23 C 1.52995 * 117.49832 * 3.50185 * 22 9 7 24 24 C 1.52994 * 117.49874 * 294.87499 * 22 9 7 25 25 H 0.97007 * 119.99934 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.59123 * 0.02562 * 13 12 10 27 27 H 1.07995 * 119.95644 * 180.02562 * 14 13 12 28 28 H 1.08007 * 119.64093 * 180.02562 * 17 16 15 29 29 H 1.08004 * 119.66085 * 179.97438 * 18 17 16 30 30 H 1.07999 * 120.25384 * 359.72656 * 21 12 10 31 31 H 1.09007 * 115.54563 * 149.20525 * 22 9 7 32 32 H 1.08994 * 117.49995 * 359.97438 * 23 22 9 33 33 H 1.09001 * 117.49756 * 145.01542 * 23 22 9 34 34 H 1.09005 * 117.49656 * 214.97574 * 24 22 9 35 35 H 1.08996 * 117.49978 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 2.3694 2.1189 -1.3925 5 1 1.5132 2.6131 0.8218 6 1 3.6020 1.4071 0.5708 7 6 2.0088 -1.2046 -0.0005 8 1 1.4882 -2.1286 0.2030 9 7 3.3522 -1.2188 -0.2590 10 6 3.8456 -0.5191 -1.2999 11 8 3.1111 0.1942 -1.9559 12 6 5.2787 -0.6190 -1.6440 13 6 5.6649 -0.7792 -2.9873 14 6 6.9751 -0.8738 -3.3277 15 6 7.9688 -0.8115 -2.3330 16 7 9.2649 -0.9026 -2.6516 17 6 10.1746 -0.8414 -1.7061 18 6 9.8041 -0.6825 -0.3682 19 7 8.5389 -0.5906 -0.0301 20 6 7.5931 -0.6503 -0.9752 21 6 6.2326 -0.5546 -0.6417 22 6 4.2544 -1.9943 0.5959 23 6 3.6250 -2.8320 1.7107 24 6 4.3959 -1.5560 2.0549 25 1 -0.4850 0.8401 0.0004 26 1 4.9092 -0.8276 -3.7573 27 1 7.2558 -0.9961 -4.3633 28 1 11.2205 -0.9148 -1.9656 29 1 10.5664 -0.6346 0.3955 30 1 5.9323 -0.4275 0.3879 31 1 5.1398 -2.3958 0.1028 32 1 2.5398 -2.8058 1.8084 33 1 4.0962 -3.7851 1.9513 34 1 5.3743 -1.6696 2.5219 35 1 3.8181 -0.6903 2.3786 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299447702.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:14 Heat of formation + Delta-G solvation = 86.027092 kcal Electronic energy + Delta-G solvation = -21892.851958 eV Core-core repulsion = 18664.965077 eV Total energy + Delta-G solvation = -3227.886881 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.37590 -39.54420 -37.05203 -36.40448 -34.79113 -33.08973 -31.78385 -30.78809 -30.50924 -26.09707 -25.05233 -23.98573 -22.53866 -22.09762 -21.44038 -20.05937 -18.59723 -18.19549 -16.92932 -16.77075 -16.23952 -15.52312 -15.00143 -14.80112 -14.49213 -14.37632 -13.96276 -13.56749 -13.39091 -13.20906 -12.74456 -12.38395 -11.78444 -11.72093 -11.69847 -11.67682 -11.62614 -11.19587 -10.79464 -10.37719 -10.16764 -10.11348 -9.72119 -9.16616 -9.00600 -8.80658 -8.63086 -8.41631 -7.63790 -6.33506 -4.16561 0.15348 0.49463 1.90831 2.61245 3.24753 3.41797 3.60667 3.71935 3.94280 3.99970 4.06928 4.22569 4.25187 4.38710 4.57434 4.78911 4.80895 4.95795 5.17762 5.24049 5.26263 5.36300 5.40628 5.55167 5.64604 5.77488 5.92804 6.08713 6.12815 6.16044 6.23423 6.46737 6.59166 6.68238 6.80057 7.21026 7.66037 7.67536 7.83127 8.56167 8.68028 9.21658 9.57636 10.68640 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.022913 B = 0.006067 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.746113 B = 4613.759949 C = 5114.946520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.088 3.912 3 Si 0.926 3.074 4 H -0.256 1.256 5 H -0.311 1.311 6 H -0.282 1.282 7 C -0.340 4.340 8 H 0.102 0.898 9 N -0.417 5.417 10 C 0.481 3.519 11 O -0.535 6.535 12 C -0.074 4.074 13 C -0.053 4.053 14 C -0.095 4.095 15 C 0.080 3.920 16 N -0.427 5.427 17 C 0.067 3.933 18 C 0.068 3.932 19 N -0.421 5.421 20 C 0.078 3.922 21 C -0.071 4.071 22 C 0.053 3.947 23 C -0.169 4.169 24 C -0.197 4.197 25 H 0.276 0.724 26 H 0.144 0.856 27 H 0.142 0.858 28 H 0.171 0.829 29 H 0.172 0.828 30 H 0.150 0.850 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.946 -3.367 -0.148 18.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.122 4.122 3 Si 0.759 3.241 4 H -0.182 1.182 5 H -0.242 1.242 6 H -0.208 1.208 7 C -0.466 4.466 8 H 0.120 0.880 9 N -0.134 5.134 10 C 0.272 3.728 11 O -0.419 6.419 12 C -0.080 4.080 13 C -0.074 4.074 14 C -0.114 4.114 15 C -0.044 4.044 16 N -0.141 5.141 17 C -0.108 4.108 18 C -0.108 4.108 19 N -0.135 5.135 20 C -0.045 4.045 21 C -0.092 4.092 22 C -0.052 4.052 23 C -0.206 4.206 24 C -0.235 4.235 25 H 0.086 0.914 26 H 0.162 0.838 27 H 0.160 0.840 28 H 0.188 0.812 29 H 0.189 0.811 30 H 0.168 0.832 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 17.101 -2.949 -0.537 17.362 hybrid contribution 0.568 0.779 0.168 0.979 sum 17.669 -2.170 -0.369 17.806 Atomic orbital electron populations 1.69658 1.06848 1.28668 1.44022 1.25482 0.95122 0.99871 0.91767 0.86002 0.78626 0.81390 0.78129 1.18238 1.24171 1.20785 1.18865 0.80082 0.95608 1.52017 0.88043 1.43043 1.06874 1.41916 1.21604 1.18149 0.86311 0.86218 0.82113 1.90592 1.58522 1.40173 1.52601 1.20481 0.95202 0.98561 0.93722 1.21030 0.96091 0.94741 0.95498 1.20635 0.90875 1.00933 0.98951 1.19600 0.91625 1.00152 0.93017 1.68658 1.00502 1.08873 1.36045 1.24000 1.00363 0.96136 0.90332 1.24000 0.93930 0.96110 0.96774 1.68676 1.01061 1.08318 1.35426 1.19438 0.94323 1.00697 0.90061 1.21530 0.89110 0.97764 1.00779 1.21995 0.96059 1.00395 0.86752 1.23169 1.01802 0.93970 1.01678 1.23330 1.01499 0.99807 0.98880 0.91403 0.83786 0.84034 0.81161 0.81090 0.83201 0.86863 0.86891 0.89299 0.89072 0.88333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.38 13.95 55.50 0.77 -24.61 16 2 C 0.09 2.52 5.03 -17.45 -0.09 2.43 16 3 Si 0.93 24.65 24.43 -169.99 -4.15 20.50 16 4 H -0.26 -7.19 6.37 56.52 0.36 -6.83 16 5 H -0.31 -8.09 7.11 56.52 0.40 -7.69 16 6 H -0.28 -7.27 7.01 56.52 0.40 -6.87 16 7 C -0.34 -9.20 8.52 -15.01 -0.13 -9.33 16 8 H 0.10 2.85 7.25 -52.49 -0.38 2.47 16 9 N -0.42 -9.84 2.46 -108.84 -0.27 -10.11 16 10 C 0.48 11.45 5.52 -12.38 -0.07 11.39 16 11 O -0.53 -14.65 12.09 5.28 0.06 -14.58 16 12 C -0.07 -1.43 5.16 -105.00 -0.54 -1.97 16 13 C -0.05 -0.87 9.57 -39.57 -0.38 -1.25 16 14 C -0.09 -1.37 9.95 -39.55 -0.39 -1.76 16 15 C 0.08 1.23 6.59 -84.72 -0.56 0.67 16 16 N -0.43 -5.76 10.46 -10.73 -0.11 -5.87 16 17 C 0.07 0.68 11.21 -17.20 -0.19 0.48 16 18 C 0.07 0.70 11.21 -17.23 -0.19 0.51 16 19 N -0.42 -6.08 10.46 -10.81 -0.11 -6.20 16 20 C 0.08 1.26 6.58 -84.81 -0.56 0.71 16 21 C -0.07 -1.26 7.52 -38.66 -0.29 -1.56 16 22 C 0.05 1.01 4.42 -67.94 -0.30 0.71 16 23 C -0.17 -2.86 9.81 -26.73 -0.26 -3.13 16 24 C -0.20 -3.36 9.51 -26.73 -0.25 -3.62 16 25 H 0.28 7.70 8.31 -40.82 -0.34 7.36 16 26 H 0.14 2.23 8.06 -52.49 -0.42 1.81 16 27 H 0.14 1.68 8.06 -52.49 -0.42 1.25 16 28 H 0.17 0.96 8.06 -52.48 -0.42 0.54 16 29 H 0.17 1.04 8.06 -52.48 -0.42 0.61 16 30 H 0.15 2.71 5.84 -52.49 -0.31 2.40 16 31 H 0.11 1.94 6.18 -51.92 -0.32 1.62 16 32 H 0.11 2.16 6.62 -51.93 -0.34 1.82 16 33 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 LS Contribution 295.80 15.07 4.46 4.46 Total: -1.00 -33.42 295.80 -7.05 -40.48 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -3.49 Total: 1.64 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -4.21 Total: -5.71 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 0.28 Total: -46.78 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: 0.06 Total: -14.58 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -4.15 Total: 20.50 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.42 -7.05 -40.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299447702.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.503 kcal (2) G-P(sol) polarization free energy of solvation -33.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds