Wall clock time and date at job start Tue Mar 31 2020 05:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.42900 * 113.99550 * 2 1 4 4 C 1.53005 * 109.47095 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46392 * 65.00396 * 4 3 2 6 6 C 1.36925 * 119.99681 * 264.46987 * 5 4 3 7 7 H 1.07997 * 120.00075 * 138.19481 * 6 5 4 8 8 C 1.39009 * 120.00399 * 318.18737 * 6 5 4 9 9 N 1.31398 * 119.99542 * 341.91557 * 8 6 5 10 10 Si 1.86791 * 120.00251 * 161.91376 * 8 6 5 11 11 H 1.48502 * 109.47288 * 90.00443 * 10 8 6 12 12 H 1.48503 * 109.47099 * 210.00322 * 10 8 6 13 13 H 1.48503 * 109.47275 * 330.00113 * 10 8 6 14 14 C 1.34779 * 120.00245 * 84.47198 * 5 4 3 15 15 O 1.21637 * 119.99515 * 359.97438 * 14 5 4 16 16 C 1.47286 * 120.00215 * 179.97438 * 14 5 4 17 17 C 1.40298 * 120.21592 * 270.00135 * 16 14 5 18 18 O 1.35660 * 120.13609 * 0.25179 * 17 16 14 19 19 C 1.38569 * 119.71911 * 179.97438 * 17 16 14 20 20 C 1.38194 * 120.16015 * 359.97438 * 19 17 16 21 21 C 1.38384 * 120.45067 * 359.97438 * 20 19 17 22 22 C 1.38162 * 120.27328 * 0.04323 * 21 20 19 23 23 F 1.35093 * 120.08669 * 179.97438 * 22 21 20 24 24 H 1.08996 * 109.46723 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.46980 * 299.99833 * 1 2 3 26 26 H 1.09001 * 109.46931 * 59.99929 * 1 2 3 27 27 H 1.09002 * 109.47013 * 60.00412 * 3 2 1 28 28 H 1.08994 * 109.47550 * 300.00327 * 3 2 1 29 29 H 1.08998 * 109.47396 * 305.00957 * 4 3 2 30 30 H 1.08995 * 109.47460 * 184.99848 * 4 3 2 31 31 H 0.97002 * 119.99485 * 179.97438 * 9 8 6 32 32 H 0.96694 * 113.99925 * 269.71937 * 18 17 16 33 33 H 1.07993 * 119.91539 * 179.97438 * 19 17 16 34 34 H 1.08001 * 119.77667 * 180.02562 * 20 19 17 35 35 H 1.07999 * 119.86902 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 3.9766 0.5642 -1.2510 6 6 4.2068 -0.7846 -1.3024 7 1 3.8779 -1.3563 -2.1575 8 6 4.8640 -1.4180 -0.2539 9 7 5.5699 -0.7126 0.6008 10 14 4.7435 -3.2720 -0.0602 11 1 5.8455 -3.9212 -0.8148 12 1 4.8517 -3.6275 1.3776 13 1 3.4377 -3.7412 -0.5892 14 6 4.1559 1.3209 -2.3518 15 8 3.9510 2.5190 -2.3062 16 6 4.5999 0.6970 -3.6100 17 6 5.9685 0.5836 -3.8973 18 8 6.8901 1.0437 -3.0147 19 6 6.3747 -0.0056 -5.0839 20 6 5.4362 -0.4801 -5.9805 21 6 4.0846 -0.3727 -5.7035 22 6 3.6592 0.2118 -4.5261 23 9 2.3388 0.3152 -4.2598 24 1 -0.3632 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8509 0.5686 0.8426 30 1 3.9785 2.1766 0.0902 31 1 6.0281 -1.1546 1.3326 32 1 7.1433 1.9663 -3.1555 33 1 7.4273 -0.0942 -5.3085 34 1 5.7598 -0.9386 -6.9032 35 1 3.3593 -0.7471 -6.4107 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316426144.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:17 Heat of formation + Delta-G solvation = -127.634896 kcal Electronic energy + Delta-G solvation = -23372.695989 eV Core-core repulsion = 19672.482053 eV Total energy + Delta-G solvation = -3700.213936 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.105 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -48.39286 -39.52678 -38.05733 -36.81415 -36.05638 -34.63996 -31.56002 -30.78396 -29.38601 -28.79363 -25.79740 -24.76842 -23.49179 -22.17923 -21.64094 -19.31952 -18.26199 -17.50786 -16.46452 -16.24158 -15.87035 -15.41224 -15.29980 -15.13520 -14.83276 -14.36622 -14.24710 -14.16718 -13.87787 -13.38094 -13.06904 -12.69585 -11.97488 -11.91359 -11.68607 -11.52368 -11.17696 -11.12945 -11.05990 -10.95966 -10.67444 -10.36650 -10.28824 -10.05429 -9.11451 -8.93837 -8.65250 -8.27814 -8.26187 -7.44272 -6.28880 -3.98262 1.46461 1.49424 3.19964 3.29094 3.36266 3.71853 3.80444 4.20971 4.37727 4.52703 4.74146 4.85306 5.08374 5.14119 5.42393 5.51657 5.67803 5.74975 5.78934 6.00335 6.03624 6.09230 6.19148 6.31128 6.35332 6.46584 6.52511 6.64161 6.75209 7.11296 7.23151 7.53674 7.83870 8.01254 8.11968 8.41616 9.14318 9.45947 9.90286 10.75588 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.013687 B = 0.008701 C = 0.007226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.234723 B = 3217.254429 C = 3873.858471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.051 3.949 4 C 0.120 3.880 5 N -0.404 5.404 6 C -0.322 4.322 7 H 0.081 0.919 8 C 0.055 3.945 9 N -0.858 5.858 10 Si 0.912 3.088 11 H -0.278 1.278 12 H -0.282 1.282 13 H -0.268 1.268 14 C 0.512 3.488 15 O -0.605 6.605 16 C -0.123 4.123 17 C 0.174 3.826 18 O -0.475 6.475 19 C -0.164 4.164 20 C -0.081 4.081 21 C -0.173 4.173 22 C 0.134 3.866 23 F -0.132 7.132 24 H 0.077 0.923 25 H 0.030 0.970 26 H 0.032 0.968 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.109 0.891 30 H 0.072 0.928 31 H 0.268 0.732 32 H 0.388 0.612 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.724 0.258 -7.310 7.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.027 4.027 4 C -0.003 4.003 5 N -0.118 5.118 6 C -0.450 4.450 7 H 0.098 0.902 8 C -0.152 4.152 9 N -0.494 5.494 10 Si 0.739 3.261 11 H -0.204 1.204 12 H -0.208 1.208 13 H -0.192 1.192 14 C 0.300 3.700 15 O -0.493 6.493 16 C -0.127 4.127 17 C 0.128 3.872 18 O -0.284 6.284 19 C -0.183 4.183 20 C -0.099 4.099 21 C -0.192 4.192 22 C 0.114 3.886 23 F -0.111 7.111 24 H 0.096 0.904 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.127 0.873 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.244 0.756 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.685 0.064 -6.789 6.995 hybrid contribution -0.491 -0.366 0.113 0.623 sum -2.176 -0.302 -6.676 7.028 Atomic orbital electron populations 1.22643 0.83338 1.01759 0.98849 1.88132 1.17476 1.27637 1.95049 1.23036 0.96360 0.84451 0.98834 1.21420 0.89258 0.99020 0.90625 1.43152 1.54283 1.07366 1.07039 1.19107 1.36786 0.81810 1.07289 0.90163 1.25297 0.93450 0.99767 0.96647 1.69924 1.27137 1.36601 1.15698 0.86172 0.78897 0.83429 0.77616 1.20415 1.20754 1.19207 1.17874 0.81748 0.85787 0.84597 1.90636 1.58243 1.14650 1.85762 1.20420 0.93362 1.02116 0.96824 1.18119 0.86021 0.95228 0.87840 1.84871 1.57949 1.31781 1.53792 1.21322 1.00451 1.02905 0.93601 1.20742 0.91614 0.98440 0.99107 1.20937 0.97200 1.04089 0.96930 1.17536 0.77449 0.99117 0.94515 1.91498 1.31575 1.93907 1.94105 0.90411 0.95147 0.94932 0.94097 0.93928 0.87309 0.91014 0.92183 0.75576 0.84955 0.85036 0.84860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.36 -8.11 10.44 -35.23 -0.37 -8.47 16 3 C 0.05 1.10 6.24 37.16 0.23 1.34 16 4 C 0.12 2.97 5.26 -4.04 -0.02 2.95 16 5 N -0.40 -10.68 2.45 -116.07 -0.28 -10.96 16 6 C -0.32 -8.72 8.30 -14.99 -0.12 -8.85 16 7 H 0.08 2.21 7.41 -52.49 -0.39 1.82 16 8 C 0.05 1.46 4.94 -17.45 -0.09 1.37 16 9 N -0.86 -23.41 11.66 55.50 0.65 -22.77 16 10 Si 0.91 20.90 29.59 -169.99 -5.03 15.87 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 14 C 0.51 13.27 6.21 -12.58 -0.08 13.19 16 15 O -0.61 -16.58 16.78 5.24 0.09 -16.50 16 16 C -0.12 -2.77 4.18 -104.79 -0.44 -3.21 16 17 C 0.17 3.44 6.72 -38.69 -0.26 3.18 16 18 O -0.47 -9.44 12.95 -18.68 -0.24 -9.68 16 19 C -0.16 -2.56 9.97 -39.48 -0.39 -2.95 16 20 C -0.08 -1.12 10.02 -39.54 -0.40 -1.52 16 21 C -0.17 -2.73 10.01 -39.56 -0.40 -3.12 16 22 C 0.13 2.72 7.17 -38.96 -0.28 2.44 16 23 F -0.13 -2.85 16.83 2.25 0.04 -2.81 16 24 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.11 2.84 5.81 -51.93 -0.30 2.54 16 30 H 0.07 1.76 7.59 -51.93 -0.39 1.37 16 31 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.39 5.78 9.06 45.56 0.41 6.19 16 33 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 35 H 0.13 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 315.12 15.07 4.75 4.75 Total: -1.00 -33.30 315.12 -4.72 -38.02 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -3.19 Total: 6.08 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -1.13 Total: 6.48 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: 0.36 Total: -33.73 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.52 Total: -34.65 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.04 Total: -2.81 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.30 -4.72 -38.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316426144.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.619 kcal (2) G-P(sol) polarization free energy of solvation -33.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds