Wall clock time and date at job start Tue Mar 31 2020 05:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.42900 * 113.99550 * 2 1 4 4 C 1.53005 * 109.47095 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46392 * 65.00396 * 4 3 2 6 6 C 1.36925 * 119.99681 * 264.46987 * 5 4 3 7 7 H 1.07997 * 120.00075 * 138.19481 * 6 5 4 8 8 C 1.39009 * 120.00399 * 318.18737 * 6 5 4 9 9 N 1.31398 * 119.99542 * 341.91557 * 8 6 5 10 10 Si 1.86791 * 120.00251 * 161.91376 * 8 6 5 11 11 H 1.48502 * 109.47288 * 90.00443 * 10 8 6 12 12 H 1.48503 * 109.47099 * 210.00322 * 10 8 6 13 13 H 1.48503 * 109.47275 * 330.00113 * 10 8 6 14 14 C 1.34779 * 120.00245 * 84.47198 * 5 4 3 15 15 O 1.21637 * 119.99515 * 359.97438 * 14 5 4 16 16 C 1.47286 * 120.00215 * 179.97438 * 14 5 4 17 17 C 1.40298 * 120.21592 * 270.00135 * 16 14 5 18 18 O 1.35660 * 120.13609 * 0.25179 * 17 16 14 19 19 C 1.38569 * 119.71911 * 179.97438 * 17 16 14 20 20 C 1.38194 * 120.16015 * 359.97438 * 19 17 16 21 21 C 1.38384 * 120.45067 * 359.97438 * 20 19 17 22 22 C 1.38162 * 120.27328 * 0.04323 * 21 20 19 23 23 F 1.35093 * 120.08669 * 179.97438 * 22 21 20 24 24 H 1.08996 * 109.46723 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.46980 * 299.99833 * 1 2 3 26 26 H 1.09001 * 109.46931 * 59.99929 * 1 2 3 27 27 H 1.09002 * 109.47013 * 60.00412 * 3 2 1 28 28 H 1.08994 * 109.47550 * 300.00327 * 3 2 1 29 29 H 1.08998 * 109.47396 * 305.00957 * 4 3 2 30 30 H 1.08995 * 109.47460 * 184.99848 * 4 3 2 31 31 H 0.97002 * 119.99485 * 179.97438 * 9 8 6 32 32 H 0.96694 * 113.99925 * 269.71937 * 18 17 16 33 33 H 1.07993 * 119.91539 * 179.97438 * 19 17 16 34 34 H 1.08001 * 119.77667 * 180.02562 * 20 19 17 35 35 H 1.07999 * 119.86902 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 3.9766 0.5642 -1.2510 6 6 4.2068 -0.7846 -1.3024 7 1 3.8779 -1.3563 -2.1575 8 6 4.8640 -1.4180 -0.2539 9 7 5.5699 -0.7126 0.6008 10 14 4.7435 -3.2720 -0.0602 11 1 5.8455 -3.9212 -0.8148 12 1 4.8517 -3.6275 1.3776 13 1 3.4377 -3.7412 -0.5892 14 6 4.1559 1.3209 -2.3518 15 8 3.9510 2.5190 -2.3062 16 6 4.5999 0.6970 -3.6100 17 6 5.9685 0.5836 -3.8973 18 8 6.8901 1.0437 -3.0147 19 6 6.3747 -0.0056 -5.0839 20 6 5.4362 -0.4801 -5.9805 21 6 4.0846 -0.3727 -5.7035 22 6 3.6592 0.2118 -4.5261 23 9 2.3388 0.3152 -4.2598 24 1 -0.3632 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8509 0.5686 0.8426 30 1 3.9785 2.1766 0.0902 31 1 6.0281 -1.1546 1.3326 32 1 7.1433 1.9663 -3.1555 33 1 7.4273 -0.0942 -5.3085 34 1 5.7598 -0.9386 -6.9032 35 1 3.3593 -0.7471 -6.4107 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316426144.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:14 Heat of formation + Delta-G solvation = -152.261807 kcal Electronic energy + Delta-G solvation = -23373.763891 eV Core-core repulsion = 19672.482053 eV Total energy + Delta-G solvation = -3701.281839 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.105 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -49.94886 -41.15486 -39.74878 -38.51494 -37.45788 -36.63343 -33.58305 -32.33447 -30.77645 -30.44263 -27.33433 -26.71234 -25.08177 -23.56289 -23.33495 -21.20409 -19.84456 -19.17073 -18.18247 -17.85540 -17.35522 -17.15373 -17.00208 -16.71106 -16.49337 -16.13344 -15.93184 -15.69207 -15.43235 -14.95626 -14.66477 -14.49611 -13.70594 -13.41226 -13.18783 -13.07141 -12.93532 -12.85271 -12.63474 -12.58971 -12.50710 -12.12557 -11.87748 -11.81023 -11.04994 -10.66143 -10.50485 -9.76996 -9.60507 -9.45906 -8.30248 -6.06022 0.08759 0.15796 1.37451 1.43474 1.55917 1.82849 2.30591 2.48442 2.86869 2.96994 3.02605 3.12241 3.50496 3.94161 4.03217 4.15803 4.20690 4.34411 4.39243 4.46084 4.53147 4.55344 4.66912 4.77433 4.82181 5.00261 5.12458 5.23300 5.28895 5.35352 5.44770 5.83391 5.94632 6.34299 6.36802 6.79620 7.10387 7.46593 7.90889 8.74857 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.013687 B = 0.008701 C = 0.007226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.234723 B = 3217.254429 C = 3873.858471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.398 6.398 3 C 0.064 3.936 4 C 0.117 3.883 5 N -0.414 5.414 6 C -0.330 4.330 7 H 0.070 0.930 8 C 0.015 3.985 9 N -0.886 5.886 10 Si 0.974 3.026 11 H -0.269 1.269 12 H -0.275 1.275 13 H -0.267 1.267 14 C 0.503 3.497 15 O -0.637 6.637 16 C -0.170 4.170 17 C 0.152 3.848 18 O -0.498 6.498 19 C -0.151 4.151 20 C -0.056 4.056 21 C -0.159 4.159 22 C 0.103 3.897 23 F -0.151 7.151 24 H 0.095 0.905 25 H 0.056 0.944 26 H 0.035 0.965 27 H 0.074 0.926 28 H 0.027 0.973 29 H 0.093 0.907 30 H 0.060 0.940 31 H 0.271 0.729 32 H 0.403 0.597 33 H 0.168 0.832 34 H 0.190 0.810 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.476 -1.745 -9.295 9.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C -0.014 4.014 4 C -0.007 4.007 5 N -0.129 5.129 6 C -0.458 4.458 7 H 0.088 0.912 8 C -0.188 4.188 9 N -0.522 5.522 10 Si 0.797 3.203 11 H -0.195 1.195 12 H -0.200 1.200 13 H -0.192 1.192 14 C 0.293 3.707 15 O -0.527 6.527 16 C -0.174 4.174 17 C 0.106 3.894 18 O -0.310 6.310 19 C -0.170 4.170 20 C -0.074 4.074 21 C -0.178 4.178 22 C 0.083 3.917 23 F -0.130 7.130 24 H 0.113 0.887 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.092 0.908 28 H 0.045 0.955 29 H 0.111 0.889 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.261 0.739 33 H 0.185 0.815 34 H 0.207 0.793 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.441 -1.933 -8.778 9.104 hybrid contribution -0.556 0.296 0.659 0.911 sum -1.997 -1.638 -8.120 8.520 Atomic orbital electron populations 1.22897 0.80484 1.03443 1.00260 1.88059 1.20650 1.27657 1.95315 1.22808 0.94266 0.84759 0.99541 1.21393 0.91564 0.97807 0.89899 1.43353 1.54492 1.07470 1.07585 1.19105 1.37199 0.82082 1.07406 0.91228 1.26063 0.92831 1.03850 0.96091 1.70013 1.27767 1.38263 1.16189 0.85242 0.78894 0.78267 0.77848 1.19480 1.20026 1.19164 1.18509 0.80821 0.85585 0.85828 1.90570 1.59489 1.16018 1.86653 1.20426 0.95373 1.05409 0.96197 1.18494 0.84919 0.96532 0.89465 1.84809 1.57974 1.33210 1.55020 1.21732 1.02768 1.00749 0.91726 1.21419 0.90127 0.95721 1.00110 1.21413 0.99117 1.01957 0.95291 1.17993 0.76478 1.01121 0.96125 1.91438 1.32779 1.94301 1.94470 0.88658 0.92526 0.94626 0.90817 0.95517 0.88905 0.92197 0.91912 0.73914 0.81462 0.79332 0.81290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.01 113.37 1.25 2.07 16 2 O -0.40 -17.83 10.44 -148.98 -1.56 -19.39 16 3 C 0.06 2.84 6.24 71.98 0.45 3.29 16 4 C 0.12 6.06 5.26 86.38 0.45 6.52 16 5 N -0.41 -22.91 2.45 -639.39 -1.57 -24.47 16 6 C -0.33 -18.38 8.30 84.08 0.70 -17.68 16 7 H 0.07 3.95 7.41 -2.91 -0.02 3.93 16 8 C 0.02 0.83 4.94 84.94 0.42 1.25 16 9 N -0.89 -49.45 11.66 21.68 0.25 -49.20 16 10 Si 0.97 42.83 29.59 68.60 2.03 44.86 16 11 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 12 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 13 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 14 C 0.50 27.39 6.21 86.62 0.54 27.93 16 15 O -0.64 -37.00 16.78 -4.15 -0.07 -37.07 16 16 C -0.17 -7.84 4.18 -19.97 -0.08 -7.92 16 17 C 0.15 5.97 6.72 22.85 0.15 6.12 16 18 O -0.50 -20.25 12.95 -89.76 -1.16 -21.41 16 19 C -0.15 -4.21 9.97 22.34 0.22 -3.98 16 20 C -0.06 -1.27 10.02 22.29 0.22 -1.05 16 21 C -0.16 -4.51 10.01 22.29 0.22 -4.28 16 22 C 0.10 4.17 7.17 22.68 0.16 4.33 16 23 F -0.15 -6.70 16.83 44.97 0.76 -5.94 16 24 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 25 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 28 H 0.03 1.25 8.14 -2.39 -0.02 1.24 16 29 H 0.09 5.07 5.81 -2.39 -0.01 5.06 16 30 H 0.06 3.14 7.59 -2.39 -0.02 3.12 16 31 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 32 H 0.40 12.52 9.06 -74.06 -0.67 11.85 16 33 H 0.17 3.45 8.06 -2.91 -0.02 3.43 16 34 H 0.19 2.24 8.06 -2.91 -0.02 2.22 16 35 H 0.17 3.52 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -76.68 315.12 3.85 -72.83 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.46 Total: 23.21 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: 4.71 Total: 16.59 kcal Atomic # 7 Polarization: -72.36 SS G_CDS: -1.31 Total: -73.68 kcal Atomic # 8 Polarization: -75.08 SS G_CDS: -2.79 Total: -77.87 kcal Atomic # 9 Polarization: -6.70 SS G_CDS: 0.76 Total: -5.94 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -76.68 3.85 -72.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316426144.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.437 kcal (2) G-P(sol) polarization free energy of solvation -76.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds