Wall clock time and date at job start Tue Mar 31 2020 05:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99996 * 2 1 4 4 H 1.48505 * 109.46797 * 269.99725 * 3 2 1 5 5 H 1.48498 * 109.47103 * 29.99291 * 3 2 1 6 6 H 1.48496 * 109.47275 * 149.99833 * 3 2 1 7 7 C 1.37880 * 119.99992 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99495 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00087 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47090 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47086 * 180.02562 * 10 9 7 12 12 S 1.80997 * 109.47226 * 180.02562 * 11 10 9 13 13 C 1.76200 * 100.00198 * 179.97438 * 12 11 10 14 14 N 1.31283 * 126.48511 * 0.02836 * 13 12 11 15 15 N 1.28514 * 109.86116 * 179.97438 * 14 13 12 16 16 C 1.30300 * 110.07772 * 359.97438 * 15 14 13 17 17 C 1.50702 * 126.34300 * 180.02562 * 16 15 14 18 18 O 1.42904 * 109.47123 * 90.02344 * 17 16 15 19 19 N 1.36539 * 126.48494 * 179.71318 * 13 12 11 20 20 C 1.46500 * 127.14134 * 0.02562 * 19 13 12 21 21 C 1.52994 * 117.49971 * 16.81875 * 20 19 13 22 22 C 1.52998 * 117.49998 * 308.15854 * 20 19 13 23 23 H 0.96998 * 120.00378 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46737 * 59.99892 * 9 7 2 25 25 H 1.09001 * 109.47142 * 300.00130 * 9 7 2 26 26 H 1.09002 * 109.47149 * 60.00474 * 10 9 7 27 27 H 1.09001 * 109.47503 * 300.00239 * 10 9 7 28 28 H 1.08995 * 109.47012 * 59.99954 * 11 10 9 29 29 H 1.09001 * 109.47135 * 300.00452 * 11 10 9 30 30 H 1.08998 * 109.47558 * 210.02199 * 17 16 15 31 31 H 1.09004 * 109.46925 * 330.02462 * 17 16 15 32 32 H 0.96698 * 113.99993 * 180.02562 * 18 17 16 33 33 H 1.09003 * 115.54416 * 162.49341 * 20 19 13 34 34 H 1.08997 * 117.50221 * 0.02562 * 21 20 19 35 35 H 1.09006 * 117.49593 * 145.02001 * 21 20 19 36 36 H 1.09005 * 117.49782 * 214.98498 * 22 20 19 37 37 H 1.08997 * 117.49985 * 359.97316 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 -0.0001 12 16 2.6564 -6.3628 0.0007 13 6 1.5364 -7.7230 0.0005 14 7 0.2253 -7.6546 -0.0005 15 7 -0.2736 -8.8390 -0.0008 16 6 0.6805 -9.7263 -0.0005 17 6 0.5078 -11.2234 -0.0013 18 8 0.4547 -11.6961 -1.3488 19 7 1.8678 -9.0475 -0.0045 20 6 3.2153 -9.6222 -0.0104 21 6 4.3759 -8.7056 0.3815 22 6 4.1908 -9.1248 -1.0790 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5570 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.8719 -3.6043 0.8906 27 1 2.8720 -3.6043 -0.8894 28 1 0.8539 -5.0445 -0.8903 29 1 0.8532 -5.0450 0.8896 30 1 1.3497 -11.6866 0.5133 31 1 -0.4185 -11.4825 0.5115 32 1 0.3439 -12.6537 -1.4256 33 1 3.2807 -10.6702 0.2820 34 1 4.1369 -7.6751 0.6442 35 1 5.2051 -9.1507 0.9316 36 1 4.8983 -9.8455 -1.4893 37 1 3.8299 -8.3703 -1.7779 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347756590.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:28 Heat of formation + Delta-G solvation = 46.208777 kcal Electronic energy + Delta-G solvation = -19302.538754 eV Core-core repulsion = 16208.369173 eV Total energy + Delta-G solvation = -3094.169581 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.02744 -38.02960 -37.28894 -34.48929 -32.98430 -32.05128 -31.45357 -27.66725 -26.90976 -24.51246 -23.47568 -22.99691 -22.01684 -21.04667 -20.07460 -18.17916 -17.94650 -16.87609 -16.24786 -16.05345 -15.37229 -15.13719 -14.96066 -14.56944 -14.53662 -14.00817 -13.78846 -12.66319 -12.50118 -12.21506 -12.19150 -11.85649 -11.80749 -11.60470 -11.19155 -11.08113 -10.89337 -10.78163 -10.59515 -10.50467 -10.16644 -10.07524 -9.84529 -9.75046 -9.31982 -9.09712 -8.35226 -7.60631 -5.99509 -4.02834 1.09073 1.35710 2.23350 2.33993 2.64217 3.24431 3.32970 3.39184 3.42246 3.67197 4.01839 4.23954 4.33958 4.38491 4.43714 4.46298 4.76838 5.08848 5.19562 5.22819 5.36077 5.48576 5.54135 5.61177 5.67232 5.70260 5.82175 6.16117 6.48681 6.52537 6.66783 6.97731 7.09064 7.65839 7.77372 7.99018 8.39109 8.53837 9.03590 9.61207 11.11681 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.031979 B = 0.003202 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.374710 B = 8741.169331 C = 9441.325800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.029 3.971 10 C -0.096 4.096 11 C -0.105 4.105 12 S -0.009 6.009 13 C 0.170 3.830 14 N -0.285 5.285 15 N -0.263 5.263 16 C 0.171 3.829 17 C 0.172 3.828 18 O -0.563 6.563 19 N -0.430 5.430 20 C 0.048 3.952 21 C -0.177 4.177 22 C -0.169 4.169 23 H 0.261 0.739 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.388 0.612 33 H 0.147 0.853 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.511 -26.194 0.737 27.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.010 4.010 10 C -0.136 4.136 11 C -0.253 4.253 12 S 0.221 5.779 13 C -0.204 4.204 14 N -0.129 5.129 15 N -0.105 5.105 16 C -0.099 4.099 17 C 0.092 3.908 18 O -0.368 6.368 19 N -0.123 5.123 20 C -0.056 4.056 21 C -0.215 4.215 22 C -0.207 4.207 23 H 0.071 0.929 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.237 0.763 33 H 0.165 0.835 34 H 0.141 0.859 35 H 0.136 0.864 36 H 0.132 0.868 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.192 -24.879 0.606 26.200 hybrid contribution 0.192 -0.289 0.122 0.367 sum 8.383 -25.168 0.728 26.537 Atomic orbital electron populations 1.69965 1.06060 1.26709 1.50482 1.25025 0.94851 0.99277 0.95259 0.86578 0.79811 0.83408 0.78109 1.20642 1.21206 1.19856 1.21198 0.93044 0.90829 1.51036 0.92559 1.19090 0.93708 0.90407 0.97827 1.21528 0.99365 0.91227 1.01446 1.24077 0.99747 0.94499 1.06957 1.85441 1.07757 0.92555 1.92121 1.27053 0.97749 0.88608 1.06967 1.74814 1.03016 1.14929 1.20153 1.73966 1.25333 0.95039 1.16130 1.24472 0.81132 0.96861 1.07386 1.20057 1.02018 0.83929 0.84784 1.86578 1.96805 1.28209 1.25258 1.45858 1.07034 1.04801 1.54634 1.22062 0.76677 0.98377 1.08518 1.23822 0.97721 1.01512 0.98485 1.23518 1.00296 1.04095 0.92808 0.92905 0.96147 0.96127 0.92284 0.92291 0.88930 0.88902 0.91684 0.89582 0.76338 0.83532 0.85866 0.86376 0.86750 0.87170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.09 13.29 55.43 0.74 -26.36 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.03 0.74 4.97 -27.89 -0.14 0.61 16 10 C -0.10 -1.95 5.16 -26.73 -0.14 -2.09 16 11 C -0.10 -1.91 5.23 37.16 0.19 -1.71 16 12 S -0.01 -0.14 17.81 -107.50 -1.91 -2.06 16 13 C 0.17 2.77 7.89 -88.34 -0.70 2.07 16 14 N -0.28 -5.43 11.60 30.68 0.36 -5.07 16 15 N -0.26 -4.67 12.17 33.00 0.40 -4.27 16 16 C 0.17 2.36 7.70 -153.99 -1.19 1.17 16 17 C 0.17 1.43 7.41 36.01 0.27 1.69 16 18 O -0.56 -4.81 13.64 -35.23 -0.48 -5.29 16 19 N -0.43 -5.72 3.16 -106.47 -0.34 -6.06 16 20 C 0.05 0.43 6.72 -67.93 -0.46 -0.03 16 21 C -0.18 -1.43 9.71 -26.70 -0.26 -1.69 16 22 C -0.17 -1.36 10.02 -26.70 -0.27 -1.63 16 23 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 29 H 0.09 1.75 8.14 -51.91 -0.42 1.33 16 30 H 0.07 0.32 7.39 -51.93 -0.38 -0.06 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.39 0.99 9.12 45.56 0.42 1.41 16 33 H 0.15 0.83 7.40 -51.93 -0.38 0.45 16 34 H 0.12 1.28 4.39 -28.47 -0.12 1.15 16 35 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.11 1.12 7.89 -51.93 -0.41 0.71 16 LS Contribution 327.42 15.07 4.93 4.93 Total: -1.00 -35.96 327.42 -8.65 -44.61 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -4.23 Total: -1.98 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -3.09 Total: -15.13 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 1.16 Total: -41.75 kcal Atomic # 8 Polarization: -4.81 SS G_CDS: -0.48 Total: -5.29 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -0.14 SS G_CDS: -1.91 Total: -2.06 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.96 -8.65 -44.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347756590.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.814 kcal (2) G-P(sol) polarization free energy of solvation -35.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds