Wall clock time and date at job start Tue Mar 31 2020 05:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86805 * 119.99732 * 2 1 4 4 H 1.48504 * 109.47282 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47444 * 299.99993 * 3 2 1 6 6 H 1.48495 * 109.46950 * 60.00034 * 3 2 1 7 7 C 1.40224 * 120.00640 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00401 * 197.88776 * 7 2 1 9 9 C 1.41112 * 119.99883 * 17.87205 * 7 2 1 10 10 C 1.40886 * 120.10523 * 204.63522 * 9 7 2 11 11 C 1.36315 * 119.89120 * 180.02562 * 10 9 7 12 12 C 1.40016 * 120.10690 * 0.02562 * 11 10 9 13 13 C 1.47641 * 119.89639 * 179.97438 * 12 11 10 14 14 O 1.21585 * 120.00009 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00363 * 179.97438 * 13 12 11 16 16 C 1.46500 * 120.00479 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.47130 * 179.97438 * 16 15 13 18 18 C 1.38627 * 120.44645 * 95.00411 * 17 16 15 19 19 C 1.38570 * 118.39775 * 179.70208 * 18 17 16 20 20 N 1.32344 * 119.10721 * 0.26690 * 19 18 17 21 21 C 1.31778 * 120.81968 * 0.02562 * 20 19 18 22 22 N 1.31814 * 121.75489 * 359.97438 * 21 20 19 23 23 C 1.40015 * 120.21033 * 0.23315 * 12 11 10 24 24 C 1.36319 * 120.10507 * 359.48248 * 23 12 11 25 25 H 0.97001 * 120.00238 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.05692 * 0.02562 * 10 9 7 27 27 H 1.08000 * 119.94725 * 179.97438 * 11 10 9 28 28 H 0.97010 * 119.99772 * 0.02562 * 15 13 12 29 29 H 1.08994 * 109.46900 * 59.99789 * 16 15 13 30 30 H 1.08998 * 109.47177 * 300.00010 * 16 15 13 31 31 H 1.07998 * 120.79843 * 359.96567 * 18 17 16 32 32 H 1.07998 * 120.44594 * 180.29539 * 19 18 17 33 33 H 1.08004 * 119.12578 * 179.97438 * 21 20 19 34 34 H 1.07996 * 119.94821 * 179.72588 * 23 12 11 35 35 H 1.07997 * 120.05751 * 180.25328 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7004 1.3466 0.0006 5 1 1.8816 2.3965 -1.2124 6 1 1.8816 2.3964 1.2125 7 6 2.0077 -1.2143 -0.0005 8 1 3.0485 -1.2370 0.2867 9 6 1.3533 -2.4068 -0.3761 10 6 1.8269 -3.6494 0.0890 11 6 1.1917 -4.7987 -0.2769 12 6 0.0707 -4.7456 -1.1141 13 6 -0.6133 -5.9933 -1.5080 14 8 -0.2033 -7.0646 -1.1052 15 7 -1.6929 -5.9446 -2.3134 16 6 -2.3720 -7.1826 -2.7038 17 6 -3.5392 -6.8545 -3.5989 18 6 -3.3988 -6.8901 -4.9776 19 6 -4.5014 -6.5869 -5.7603 20 7 -5.6427 -6.2703 -5.1697 21 6 -5.7375 -6.2410 -3.8557 22 7 -4.7102 -6.5234 -3.0796 23 6 -0.4005 -3.5134 -1.5833 24 6 0.2246 -2.3584 -1.2181 25 1 -0.4850 0.8400 -0.0004 26 1 2.6918 -3.6915 0.7345 27 1 1.5543 -5.7518 0.0788 28 1 -2.0203 -5.0898 -2.6345 29 1 -2.7315 -7.6965 -1.8124 30 1 -1.6739 -7.8271 -3.2380 31 1 -2.4541 -7.1520 -5.4307 32 1 -4.4304 -6.6091 -6.8377 33 1 -6.6821 -5.9787 -3.4025 34 1 -1.2628 -3.4777 -2.2324 35 1 -0.1419 -1.4081 -1.5771 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353536046.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:21 Heat of formation + Delta-G solvation = 25.440601 kcal Electronic energy + Delta-G solvation = -20261.194198 eV Core-core repulsion = 17030.680090 eV Total energy + Delta-G solvation = -3230.514108 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.25890 -39.10299 -37.18529 -35.23221 -33.90572 -33.41365 -32.24571 -30.28506 -29.47774 -27.61170 -25.64048 -24.62094 -23.01693 -21.79393 -20.93614 -19.73367 -17.82143 -17.68780 -17.52320 -16.33648 -15.82743 -15.69337 -15.36341 -14.71071 -14.59916 -14.08972 -13.89466 -13.83811 -13.29007 -12.90468 -12.73185 -12.50176 -12.12134 -11.94372 -11.40262 -11.30506 -11.13299 -10.98992 -10.97212 -10.68072 -10.09070 -9.96477 -9.59906 -9.49994 -9.38071 -9.03215 -8.73982 -7.75562 -7.57916 -7.06682 -4.63468 0.61201 0.76184 2.18537 2.88242 2.93395 2.98912 3.00924 3.38462 3.71160 3.72081 3.81253 3.91857 3.97534 4.21692 4.53013 4.71866 4.79399 5.22260 5.27473 5.53187 5.58521 5.64481 5.99166 6.03475 6.11002 6.28829 6.73271 6.74346 6.77228 6.79745 7.00409 7.09802 7.40233 7.60460 7.74565 7.83049 7.83142 8.03640 8.12984 8.36833 8.60012 8.71969 8.97884 9.85233 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.021291 B = 0.003498 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.784368 B = 8003.532688 C = 8974.777145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.441 4.441 8 H 0.086 0.914 9 C 0.129 3.871 10 C -0.239 4.239 11 C -0.020 4.020 12 C -0.285 4.285 13 C 0.576 3.424 14 O -0.573 6.573 15 N -0.735 5.735 16 C 0.173 3.827 17 C 0.164 3.836 18 C -0.210 4.210 19 C 0.147 3.853 20 N -0.521 5.521 21 C 0.294 3.706 22 N -0.505 5.505 23 C -0.062 4.062 24 C -0.178 4.178 25 H 0.286 0.714 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.398 0.602 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.151 0.849 32 H 0.170 0.830 33 H 0.198 0.802 34 H 0.086 0.914 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.095 -5.650 -9.317 13.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.147 4.147 3 Si 0.737 3.263 4 H -0.180 1.180 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.469 4.469 8 H 0.104 0.896 9 C 0.126 3.874 10 C -0.258 4.258 11 C -0.039 4.039 12 C -0.289 4.289 13 C 0.371 3.629 14 O -0.454 6.454 15 N -0.390 5.390 16 C 0.048 3.952 17 C 0.017 3.983 18 C -0.232 4.232 19 C -0.019 4.019 20 N -0.235 5.235 21 C 0.006 3.994 22 N -0.219 5.219 23 C -0.081 4.081 24 C -0.197 4.197 25 H 0.098 0.902 26 H 0.117 0.883 27 H 0.120 0.880 28 H 0.234 0.766 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.169 0.831 32 H 0.187 0.813 33 H 0.214 0.786 34 H 0.104 0.896 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.888 -6.024 -8.588 13.125 hybrid contribution 0.710 1.018 -0.562 1.362 sum -7.178 -5.006 -9.150 12.661 Atomic orbital electron populations 1.69749 1.07949 1.30029 1.31597 1.26112 0.94805 1.01947 0.91878 0.86168 0.81125 0.80163 0.78890 1.18019 1.19372 1.19635 1.19899 0.98471 0.91188 1.37306 0.89606 1.17796 0.90317 0.92212 0.87109 1.20717 1.04648 0.92612 1.07857 1.20356 0.92799 0.97201 0.93564 1.18829 1.04638 0.90787 1.14696 1.18588 0.78302 0.89793 0.76230 1.90643 1.66521 1.31621 1.56657 1.45798 1.31711 1.08176 1.53299 1.20016 0.89065 0.88667 0.97458 1.21822 0.93279 0.90878 0.92327 1.22890 1.02049 1.03021 0.95287 1.23269 0.87522 0.89881 1.01226 1.68423 1.27302 1.14546 1.13274 1.25056 0.97405 0.91084 0.85846 1.68321 1.00103 1.11689 1.41774 1.20452 0.97237 0.92646 0.97743 1.20972 0.99947 0.96873 1.01954 0.90230 0.88305 0.88014 0.76644 0.89649 0.89767 0.83086 0.81280 0.78559 0.89560 0.86221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.37 10.95 55.56 0.61 -17.77 16 2 C 0.07 1.71 5.14 -17.31 -0.09 1.62 16 3 Si 0.91 17.10 29.60 -169.99 -5.03 12.07 16 4 H -0.26 -4.78 7.11 56.52 0.40 -4.37 16 5 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 6 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 7 C -0.44 -10.88 9.04 -37.75 -0.34 -11.22 16 8 H 0.09 2.02 7.91 -52.49 -0.42 1.61 16 9 C 0.13 3.26 5.58 -106.80 -0.60 2.66 16 10 C -0.24 -5.73 9.73 -39.27 -0.38 -6.11 16 11 C -0.02 -0.47 9.52 -39.61 -0.38 -0.84 16 12 C -0.28 -6.45 5.89 -104.73 -0.62 -7.07 16 13 C 0.58 12.03 7.76 -12.42 -0.10 11.93 16 14 O -0.57 -13.29 16.32 5.29 0.09 -13.20 16 15 N -0.74 -12.23 5.50 -62.50 -0.34 -12.57 16 16 C 0.17 2.38 6.03 -5.19 -0.03 2.35 16 17 C 0.16 1.98 6.19 -82.24 -0.51 1.47 16 18 C -0.21 -1.99 9.84 -39.32 -0.39 -2.38 16 19 C 0.15 1.31 11.30 -17.21 -0.19 1.12 16 20 N -0.52 -5.62 10.44 -14.59 -0.15 -5.78 16 21 C 0.29 3.21 12.29 -92.15 -1.13 2.07 16 22 N -0.50 -6.47 10.38 -10.79 -0.11 -6.59 16 23 C -0.06 -1.36 9.47 -39.61 -0.38 -1.74 16 24 C -0.18 -4.35 8.64 -39.27 -0.34 -4.68 16 25 H 0.29 6.13 8.29 -40.82 -0.34 5.79 16 26 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 27 H 0.10 2.28 7.63 -52.49 -0.40 1.88 16 28 H 0.40 6.25 6.47 -40.82 -0.26 5.99 16 29 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.08 1.06 8.06 -51.93 -0.42 0.64 16 31 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 32 H 0.17 0.93 8.06 -52.49 -0.42 0.50 16 33 H 0.20 1.54 8.06 -52.48 -0.42 1.12 16 34 H 0.09 1.65 6.37 -52.49 -0.33 1.31 16 35 H 0.12 2.96 6.16 -52.49 -0.32 2.64 16 LS Contribution 312.18 15.07 4.70 4.70 Total: -1.00 -29.60 312.18 -9.11 -38.71 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -3.40 Total: 11.23 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -5.47 Total: -10.81 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.00 Total: -42.70 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.09 Total: -13.20 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.07 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.60 -9.11 -38.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353536046.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.150 kcal (2) G-P(sol) polarization free energy of solvation -29.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds