Wall clock time and date at job start Tue Mar 31 2020 05:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86796 * 119.99886 * 2 1 4 4 H 1.48497 * 109.47600 * 270.00440 * 3 2 1 5 5 H 1.48507 * 109.47001 * 30.00500 * 3 2 1 6 6 H 1.48501 * 109.47187 * 149.99994 * 3 2 1 7 7 C 1.38796 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99621 * 359.97438 * 7 2 1 9 9 S 1.76192 * 120.00161 * 179.97438 * 7 2 1 10 10 C 1.81005 * 100.00144 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47142 * 180.02562 * 10 9 7 12 12 N 1.31133 * 126.55079 * 90.25074 * 11 10 9 13 13 C 1.34489 * 105.61197 * 180.12082 * 12 11 10 14 14 C 1.50706 * 126.28366 * 179.90209 * 13 12 11 15 15 N 1.46893 * 109.47176 * 359.71906 * 14 13 12 16 16 C 1.52997 * 109.47103 * 239.71561 * 14 13 12 17 17 C 1.52996 * 109.46975 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.47343 * 59.99992 * 17 16 14 19 19 C 1.53005 * 109.46982 * 299.99735 * 18 17 16 20 20 C 1.52996 * 109.46543 * 60.00174 * 19 18 17 21 21 N 1.29945 * 107.42541 * 359.64197 * 13 12 11 22 22 O 1.21299 * 110.25244 * 0.22967 * 21 13 12 23 23 H 0.97003 * 119.99778 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.46814 * 59.99670 * 10 9 7 25 25 H 1.09006 * 109.46704 * 299.99975 * 10 9 7 26 26 H 1.00899 * 110.99958 * 299.99574 * 15 14 13 27 27 H 1.00900 * 111.00360 * 63.94938 * 15 14 13 28 28 H 1.09000 * 109.47140 * 300.00046 * 16 14 13 29 29 H 1.08992 * 109.47280 * 59.99899 * 16 14 13 30 30 H 1.09004 * 109.47368 * 299.99783 * 17 16 14 31 31 H 1.09004 * 109.47108 * 179.97438 * 17 16 14 32 32 H 1.09002 * 109.47067 * 180.02562 * 18 17 16 33 33 H 1.09000 * 109.47312 * 60.00057 * 18 17 16 34 34 H 1.09000 * 109.47360 * 300.00293 * 19 18 17 35 35 H 1.09001 * 109.46812 * 179.97438 * 19 18 17 36 36 H 1.09004 * 109.46785 * 179.97438 * 20 19 18 37 37 H 1.09004 * 109.47694 * 60.00013 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5479 1.4402 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2020 -0.0012 10 6 4.0866 -2.9845 -0.0025 11 6 5.5731 -3.2325 -0.0026 12 7 6.3426 -3.3663 1.0507 13 6 7.5824 -3.5679 0.5700 14 6 8.8321 -3.7773 1.3858 15 7 8.4986 -3.7225 2.8154 16 6 9.8462 -2.6801 1.0562 17 6 11.1151 -2.8931 1.8840 18 6 11.7169 -4.2602 1.5523 19 6 10.7028 -5.3574 1.8820 20 6 9.4339 -5.1443 1.0541 21 7 7.5038 -3.5544 -0.7270 22 8 6.3581 -3.3630 -1.0763 23 1 -0.4850 0.8401 0.0004 24 1 3.6433 -3.4309 -0.8926 25 1 3.6440 -3.4321 0.8874 26 1 8.0990 -2.8288 3.0594 27 1 7.8799 -4.4773 3.0716 28 1 10.0936 -2.7208 -0.0045 29 1 9.4173 -1.7063 1.2921 30 1 10.8680 -2.8527 2.9449 31 1 11.8378 -2.1117 1.6488 32 1 12.6207 -4.4121 2.1424 33 1 11.9641 -4.3006 0.4915 34 1 10.4557 -5.3169 2.9428 35 1 11.1315 -6.3313 1.6452 36 1 8.7116 -5.9263 1.2886 37 1 9.6810 -5.1848 -0.0067 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424350615.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:05 Heat of formation + Delta-G solvation = 43.600193 kcal Electronic energy + Delta-G solvation = -19942.664916 eV Core-core repulsion = 16848.382219 eV Total energy + Delta-G solvation = -3094.282698 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.40678 -39.40275 -35.70390 -33.78213 -32.61147 -32.47178 -31.01282 -29.21343 -28.09802 -25.80312 -24.42993 -22.88877 -22.73891 -21.13321 -19.23051 -18.10145 -17.92322 -17.14198 -15.96847 -15.90156 -15.19977 -14.87894 -14.64605 -14.49246 -14.28847 -13.67862 -13.41218 -12.97551 -12.76838 -12.70063 -12.36892 -12.24826 -12.00989 -11.71312 -11.40180 -11.21346 -11.15786 -11.05997 -10.87699 -10.79016 -10.51282 -10.31208 -10.05602 -9.58026 -9.17276 -9.11549 -8.83541 -7.20383 -6.44240 -4.21565 1.19538 2.20187 2.81604 3.01881 3.19833 3.33389 3.39524 3.54701 4.08751 4.16326 4.36634 4.48475 4.54671 4.62531 4.86305 4.94586 5.01310 5.08332 5.22184 5.24864 5.37030 5.40830 5.50267 5.63842 5.69749 5.79541 5.82310 5.95397 5.96043 6.05196 6.07451 6.08166 6.13026 6.34650 6.91188 7.28449 7.78589 8.27616 8.31342 8.99544 10.64612 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.034962 B = 0.003696 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.667749 B = 7573.575942 C = 7874.454123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.099 3.901 3 Si 0.856 3.144 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.238 1.238 7 C -0.514 4.514 8 H 0.096 0.904 9 S -0.163 6.163 10 C -0.013 4.013 11 C 0.222 3.778 12 N -0.482 5.482 13 C 0.133 3.867 14 C 0.219 3.781 15 N -0.814 5.814 16 C -0.103 4.103 17 C -0.108 4.108 18 C -0.118 4.118 19 C -0.108 4.108 20 C -0.102 4.102 21 N -0.384 5.384 22 O 0.077 5.923 23 H 0.274 0.726 24 H 0.109 0.891 25 H 0.117 0.883 26 H 0.350 0.650 27 H 0.347 0.653 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.319 -8.449 3.193 21.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.111 4.111 3 Si 0.681 3.319 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.162 1.162 7 C -0.661 4.661 8 H 0.114 0.886 9 S 0.062 5.938 10 C -0.161 4.161 11 C 0.002 3.998 12 N -0.217 5.217 13 C -0.143 4.143 14 C 0.123 3.877 15 N -0.343 5.343 16 C -0.142 4.142 17 C -0.146 4.146 18 C -0.156 4.156 19 C -0.146 4.146 20 C -0.141 4.141 21 N -0.093 5.093 22 O 0.020 5.980 23 H 0.084 0.916 24 H 0.127 0.873 25 H 0.135 0.865 26 H 0.164 0.836 27 H 0.160 0.840 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 21.411 -7.729 3.233 22.992 hybrid contribution -2.156 0.050 -0.559 2.228 sum 19.255 -7.679 2.674 20.902 Atomic orbital electron populations 1.69916 1.05808 1.28040 1.47065 1.24694 0.94482 0.98910 0.93013 0.86757 0.81725 0.83455 0.79979 1.19044 1.19583 1.16235 1.22074 0.86205 0.97947 1.59862 0.88624 1.84647 1.12439 0.99093 1.97613 1.21702 0.82808 1.03846 1.07763 1.28181 0.97577 0.93681 0.80361 1.71787 1.00193 1.20792 1.28880 1.27193 0.96686 1.01147 0.89274 1.19158 0.85759 0.97258 0.85513 1.59113 1.52282 1.09795 1.13100 1.21566 0.95033 0.96934 1.00622 1.21413 0.95353 0.96629 1.01203 1.21527 0.97985 0.95051 1.01007 1.21415 0.94192 0.97863 1.01135 1.21578 0.97761 0.94073 1.00712 1.74533 0.98253 1.20724 1.15769 1.85300 1.12801 1.64147 1.35745 0.91623 0.87263 0.86462 0.83597 0.83991 0.91118 0.91755 0.90295 0.92297 0.92039 0.92453 0.90346 0.92335 0.91967 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.16 13.97 55.49 0.78 -24.39 16 2 C 0.10 2.73 5.50 -17.43 -0.10 2.64 16 3 Si 0.86 20.49 27.74 -169.99 -4.71 15.77 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.24 -5.63 6.74 56.52 0.38 -5.25 16 7 C -0.51 -13.84 10.04 30.94 0.31 -13.53 16 8 H 0.10 2.69 8.03 -52.48 -0.42 2.27 16 9 S -0.16 -3.75 19.39 -107.50 -2.08 -5.83 16 10 C -0.01 -0.23 6.30 36.01 0.23 0.00 16 11 C 0.22 3.87 7.77 -13.06 -0.10 3.76 16 12 N -0.48 -8.06 11.21 -9.87 -0.11 -8.17 16 13 C 0.13 2.03 6.45 -156.38 -1.01 1.02 16 14 C 0.22 2.60 0.79 -132.75 -0.10 2.50 16 15 N -0.81 -8.74 7.11 -0.19 0.00 -8.75 16 16 C -0.10 -1.16 4.87 -26.73 -0.13 -1.29 16 17 C -0.11 -0.99 5.77 -26.73 -0.15 -1.15 16 18 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 19 C -0.11 -0.94 5.77 -26.73 -0.15 -1.10 16 20 C -0.10 -1.08 4.83 -26.73 -0.13 -1.21 16 21 N -0.38 -6.36 12.16 30.90 0.38 -5.99 16 22 O 0.08 1.34 11.31 18.12 0.20 1.54 16 23 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 24 H 0.11 1.81 8.14 -51.92 -0.42 1.38 16 25 H 0.12 2.03 8.14 -51.91 -0.42 1.61 16 26 H 0.35 4.01 8.96 -39.29 -0.35 3.66 16 27 H 0.35 3.68 8.98 -39.29 -0.35 3.33 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.75 7.60 -51.93 -0.39 0.35 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.70 7.60 -51.93 -0.39 0.31 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 318.74 15.07 4.80 4.80 Total: -1.00 -28.50 318.74 -7.55 -36.05 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -5.30 Total: 4.45 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -1.50 Total: -9.49 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 1.04 Total: -47.29 kcal Atomic # 8 Polarization: 1.34 SS G_CDS: 0.20 Total: 1.54 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.71 Total: 15.77 kcal Atomic # 16 Polarization: -3.75 SS G_CDS: -2.08 Total: -5.83 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.50 -7.55 -36.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424350615.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.650 kcal (2) G-P(sol) polarization free energy of solvation -28.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds