Wall clock time and date at job start Tue Mar 31 2020 05:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31264 * 1 3 3 Si 1.86802 * 120.00000 * 2 1 4 4 H 1.48494 * 109.47155 * 240.00022 * 3 2 1 5 5 H 1.48500 * 109.46800 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47028 * 119.99663 * 3 2 1 7 7 C 1.39194 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00442 * 179.97438 * 7 2 1 9 9 N 1.36661 * 120.00382 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00525 * 179.97438 * 9 7 2 11 11 O 1.21570 * 119.99906 * 0.02562 * 10 9 7 12 12 C 1.48012 * 120.00034 * 180.02562 * 10 9 7 13 13 N 1.32308 * 119.76187 * 354.49325 * 12 10 9 14 14 C 1.33338 * 119.67409 * 179.97438 * 13 12 10 15 15 C 1.40812 * 121.00784 * 180.02562 * 14 13 12 16 16 C 1.36002 * 119.70047 * 179.97438 * 15 14 13 17 17 C 1.39459 * 120.97666 * 359.74141 * 16 15 14 18 18 C 1.36103 * 121.01753 * 0.51938 * 17 16 15 19 19 C 1.40520 * 119.75907 * 359.48969 * 18 17 16 20 20 N 1.33797 * 120.99734 * 180.27628 * 19 18 17 21 21 C 1.31244 * 119.82981 * 179.97438 * 20 19 18 22 22 C 1.50704 * 119.71851 * 180.02562 * 21 20 19 23 23 C 1.52998 * 117.49522 * 353.54668 * 22 21 20 24 24 C 1.53001 * 117.49350 * 284.88785 * 22 21 20 25 25 H 0.96996 * 120.00161 * 359.97438 * 1 2 3 26 26 H 0.97005 * 119.99657 * 0.02562 * 9 7 2 27 27 H 1.08005 * 120.14718 * 359.94592 * 15 14 13 28 28 H 1.08002 * 119.51001 * 179.97438 * 16 15 14 29 29 H 1.08000 * 119.49450 * 180.26020 * 17 16 15 30 30 H 1.08000 * 120.12584 * 179.76395 * 18 17 16 31 31 H 1.08995 * 115.55282 * 139.21982 * 22 21 20 32 32 H 1.09003 * 117.50004 * 0.02562 * 23 22 21 33 33 H 1.08998 * 117.49776 * 145.02776 * 23 22 21 34 34 H 1.09006 * 117.49720 * 214.97834 * 24 22 21 35 35 H 1.08993 * 117.50071 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2466 1.6178 0.0000 4 1 3.1004 1.6964 -1.2125 5 1 1.2816 2.7464 -0.0006 6 1 3.1003 1.6964 1.2125 7 6 2.0086 -1.2054 0.0005 8 1 3.0886 -1.2055 0.0001 9 7 1.3254 -2.3890 0.0016 10 6 1.9993 -3.5562 0.0016 11 8 3.2150 -3.5562 0.0011 12 6 1.2592 -4.8380 0.0022 13 7 -0.0593 -4.8351 0.1129 14 6 -0.7242 -5.9909 0.1127 15 6 -2.1273 -6.0205 0.2284 16 6 -2.7786 -7.2144 0.2247 17 6 -2.0780 -8.4140 0.1024 18 6 -0.7213 -8.4258 -0.0063 19 6 -0.0110 -7.2133 -0.0065 20 7 1.3222 -7.1958 -0.1175 21 6 1.9625 -6.0502 -0.1157 22 6 3.4642 -6.0334 -0.2414 23 6 4.1903 -7.3798 -0.2150 24 6 4.2805 -6.4373 0.9879 25 1 -0.4850 0.8400 0.0004 26 1 0.3554 -2.3890 0.0016 27 1 -2.6836 -5.0993 0.3202 28 1 -3.8548 -7.2336 0.3141 29 1 -2.6198 -9.3482 0.0980 30 1 -0.1929 -9.3634 -0.0964 31 1 3.8735 -5.2533 -0.8833 32 1 3.5819 -8.2777 -0.1070 33 1 5.0777 -7.4853 -0.8391 34 1 5.2272 -5.9233 1.1546 35 1 3.7315 -6.7148 1.8877 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448846563.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:21 Heat of formation + Delta-G solvation = 59.309507 kcal Electronic energy + Delta-G solvation = -21228.546315 eV Core-core repulsion = 17999.500873 eV Total energy + Delta-G solvation = -3229.045442 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.15686 -38.48670 -37.34136 -36.16548 -34.21255 -34.17414 -31.54007 -30.46949 -30.26516 -26.02311 -25.39709 -24.00765 -22.13412 -21.82167 -21.10006 -20.14391 -18.43796 -18.13345 -17.48617 -16.50770 -15.47293 -15.31511 -14.97567 -14.83035 -14.44835 -14.03615 -13.97663 -13.79007 -13.35253 -12.86830 -12.08758 -11.86621 -11.77447 -11.70988 -11.43212 -11.37565 -11.33122 -11.15238 -11.03346 -10.61654 -10.47936 -10.11796 -10.09777 -9.71783 -9.03039 -8.50180 -8.36425 -8.25498 -8.21353 -6.76567 -3.99320 0.34864 0.72488 2.12585 2.75974 3.10666 3.11842 3.15530 3.86391 3.91103 4.11989 4.21175 4.37115 4.48923 4.56285 4.77286 4.86922 5.00351 5.13011 5.20529 5.31238 5.45009 5.47038 5.59364 5.63540 5.93236 6.00555 6.08179 6.17080 6.19136 6.23615 6.40821 6.51185 6.53737 6.72123 6.91843 7.21747 7.61390 7.74719 8.07799 8.35689 8.86500 9.26788 9.86228 10.37742 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.016511 B = 0.005442 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.478408 B = 5144.019351 C = 6761.173659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.025 3.975 3 Si 0.941 3.059 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.283 4.283 8 H 0.115 0.885 9 N -0.507 5.507 10 C 0.458 3.542 11 O -0.586 6.586 12 C 0.101 3.899 13 N -0.423 5.423 14 C 0.081 3.919 15 C -0.080 4.080 16 C -0.111 4.111 17 C -0.111 4.111 18 C -0.084 4.084 19 C 0.072 3.928 20 N -0.438 5.438 21 C 0.180 3.820 22 C -0.089 4.089 23 C -0.177 4.177 24 C -0.148 4.148 25 H 0.282 0.718 26 H 0.405 0.595 27 H 0.138 0.862 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.133 0.867 31 H 0.148 0.852 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.089 -12.277 0.208 12.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.182 4.182 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.414 4.414 8 H 0.133 0.867 9 N -0.139 5.139 10 C 0.245 3.755 11 O -0.473 6.473 12 C -0.054 4.054 13 N -0.141 5.141 14 C -0.046 4.046 15 C -0.099 4.099 16 C -0.131 4.131 17 C -0.131 4.131 18 C -0.104 4.104 19 C -0.052 4.052 20 N -0.152 5.152 21 C 0.023 3.977 22 C -0.108 4.108 23 C -0.214 4.214 24 C -0.187 4.187 25 H 0.092 0.908 26 H 0.241 0.759 27 H 0.156 0.844 28 H 0.148 0.852 29 H 0.147 0.853 30 H 0.151 0.849 31 H 0.166 0.834 32 H 0.118 0.882 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.652 -12.187 0.214 12.474 hybrid contribution -0.496 0.829 0.047 0.967 sum -3.147 -11.358 0.260 11.789 Atomic orbital electron populations 1.69585 1.06463 1.29584 1.44467 1.25595 0.95732 1.00647 0.96195 0.85746 0.78886 0.79145 0.79617 1.19283 1.20534 1.19279 1.20025 0.94153 0.82030 1.45227 0.86738 1.41954 1.10540 1.04495 1.56907 1.16974 0.86958 0.82004 0.89561 1.90582 1.11954 1.85397 1.59371 1.22732 0.89749 0.96608 0.96283 1.68788 1.07714 1.27471 1.10105 1.19656 0.95355 0.89334 1.00235 1.20875 0.91334 0.99150 0.98575 1.20885 1.00325 0.91980 0.99878 1.20890 0.93896 0.98412 0.99914 1.20690 0.93809 0.96257 0.99626 1.19628 0.90335 0.94300 1.00966 1.68419 1.07212 1.28027 1.11510 1.21516 0.96428 0.87763 0.92006 1.21065 0.86104 0.99357 1.04269 1.23022 1.02197 0.94479 1.01729 1.22790 1.01366 1.02448 0.92053 0.90787 0.75949 0.84373 0.85192 0.85314 0.84882 0.83414 0.88215 0.88865 0.88193 0.89671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.37 13.04 55.51 0.72 -21.64 16 2 C 0.03 0.64 5.50 -17.44 -0.10 0.54 16 3 Si 0.94 19.50 29.55 -169.99 -5.02 14.48 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 7 C -0.28 -7.52 9.68 -15.04 -0.15 -7.67 16 8 H 0.11 3.09 7.15 -52.49 -0.38 2.71 16 9 N -0.51 -13.16 5.26 -11.80 -0.06 -13.22 16 10 C 0.46 11.39 7.72 -12.26 -0.09 11.30 16 11 O -0.59 -15.16 12.99 5.30 0.07 -15.09 16 12 C 0.10 2.26 6.75 -82.75 -0.56 1.70 16 13 N -0.42 -9.01 9.65 -7.41 -0.07 -9.08 16 14 C 0.08 1.49 6.60 -84.79 -0.56 0.93 16 15 C -0.08 -1.18 9.99 -39.41 -0.39 -1.57 16 16 C -0.11 -1.27 9.95 -39.93 -0.40 -1.67 16 17 C -0.11 -1.22 9.95 -39.89 -0.40 -1.62 16 18 C -0.08 -1.14 9.98 -39.49 -0.39 -1.54 16 19 C 0.07 1.27 6.60 -84.70 -0.56 0.71 16 20 N -0.44 -8.17 9.41 -6.78 -0.06 -8.23 16 21 C 0.18 3.62 6.49 -81.94 -0.53 3.09 16 22 C -0.09 -1.64 4.39 -91.77 -0.40 -2.04 16 23 C -0.18 -2.62 10.03 -26.69 -0.27 -2.89 16 24 C -0.15 -2.39 10.24 -26.69 -0.27 -2.66 16 25 H 0.28 6.79 8.31 -40.82 -0.34 6.45 16 26 H 0.41 10.50 7.24 -40.82 -0.30 10.21 16 27 H 0.14 1.91 8.06 -52.48 -0.42 1.48 16 28 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 29 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 30 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.15 2.96 6.39 -51.93 -0.33 2.63 16 32 H 0.10 1.47 7.56 -51.93 -0.39 1.08 16 33 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 308.38 15.07 4.65 4.65 Total: -1.00 -28.97 308.38 -8.34 -37.31 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -3.49 Total: 14.21 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -5.07 Total: -3.38 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: 0.53 Total: -52.18 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: 0.07 Total: -15.09 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.97 -8.34 -37.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448846563.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.618 kcal (2) G-P(sol) polarization free energy of solvation -28.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds