Wall clock time and date at job start Tue Mar 31 2020 05:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31264 * 1 3 3 Si 1.86802 * 120.00000 * 2 1 4 4 H 1.48494 * 109.47155 * 240.00022 * 3 2 1 5 5 H 1.48500 * 109.46800 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47028 * 119.99663 * 3 2 1 7 7 C 1.39194 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00442 * 179.97438 * 7 2 1 9 9 N 1.36661 * 120.00382 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00525 * 179.97438 * 9 7 2 11 11 O 1.21570 * 119.99906 * 0.02562 * 10 9 7 12 12 C 1.48012 * 120.00034 * 180.02562 * 10 9 7 13 13 N 1.32308 * 119.76187 * 354.49325 * 12 10 9 14 14 C 1.33338 * 119.67409 * 179.97438 * 13 12 10 15 15 C 1.40812 * 121.00784 * 180.02562 * 14 13 12 16 16 C 1.36002 * 119.70047 * 179.97438 * 15 14 13 17 17 C 1.39459 * 120.97666 * 359.74141 * 16 15 14 18 18 C 1.36103 * 121.01753 * 0.51938 * 17 16 15 19 19 C 1.40520 * 119.75907 * 359.48969 * 18 17 16 20 20 N 1.33797 * 120.99734 * 180.27628 * 19 18 17 21 21 C 1.31244 * 119.82981 * 179.97438 * 20 19 18 22 22 C 1.50704 * 119.71851 * 180.02562 * 21 20 19 23 23 C 1.52998 * 117.49522 * 353.54668 * 22 21 20 24 24 C 1.53001 * 117.49350 * 284.88785 * 22 21 20 25 25 H 0.96996 * 120.00161 * 359.97438 * 1 2 3 26 26 H 0.97005 * 119.99657 * 0.02562 * 9 7 2 27 27 H 1.08005 * 120.14718 * 359.94592 * 15 14 13 28 28 H 1.08002 * 119.51001 * 179.97438 * 16 15 14 29 29 H 1.08000 * 119.49450 * 180.26020 * 17 16 15 30 30 H 1.08000 * 120.12584 * 179.76395 * 18 17 16 31 31 H 1.08995 * 115.55282 * 139.21982 * 22 21 20 32 32 H 1.09003 * 117.50004 * 0.02562 * 23 22 21 33 33 H 1.08998 * 117.49776 * 145.02776 * 23 22 21 34 34 H 1.09006 * 117.49720 * 214.97834 * 24 22 21 35 35 H 1.08993 * 117.50071 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2466 1.6178 0.0000 4 1 3.1004 1.6964 -1.2125 5 1 1.2816 2.7464 -0.0006 6 1 3.1003 1.6964 1.2125 7 6 2.0086 -1.2054 0.0005 8 1 3.0886 -1.2055 0.0001 9 7 1.3254 -2.3890 0.0016 10 6 1.9993 -3.5562 0.0016 11 8 3.2150 -3.5562 0.0011 12 6 1.2592 -4.8380 0.0022 13 7 -0.0593 -4.8351 0.1129 14 6 -0.7242 -5.9909 0.1127 15 6 -2.1273 -6.0205 0.2284 16 6 -2.7786 -7.2144 0.2247 17 6 -2.0780 -8.4140 0.1024 18 6 -0.7213 -8.4258 -0.0063 19 6 -0.0110 -7.2133 -0.0065 20 7 1.3222 -7.1958 -0.1175 21 6 1.9625 -6.0502 -0.1157 22 6 3.4642 -6.0334 -0.2414 23 6 4.1903 -7.3798 -0.2150 24 6 4.2805 -6.4373 0.9879 25 1 -0.4850 0.8400 0.0004 26 1 0.3554 -2.3890 0.0016 27 1 -2.6836 -5.0993 0.3202 28 1 -3.8548 -7.2336 0.3141 29 1 -2.6198 -9.3482 0.0980 30 1 -0.1929 -9.3634 -0.0964 31 1 3.8735 -5.2533 -0.8833 32 1 3.5819 -8.2777 -0.1070 33 1 5.0777 -7.4853 -0.8391 34 1 5.2272 -5.9233 1.1546 35 1 3.7315 -6.7148 1.8877 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448846563.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:20 Heat of formation + Delta-G solvation = 40.242152 kcal Electronic energy + Delta-G solvation = -21229.373137 eV Core-core repulsion = 17999.500873 eV Total energy + Delta-G solvation = -3229.872265 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.59575 -40.17515 -38.80235 -37.49676 -36.12172 -35.60726 -33.42859 -31.85899 -31.46987 -27.72839 -26.85065 -25.55961 -23.37160 -23.05965 -22.51365 -21.80804 -20.28917 -19.60356 -18.91230 -18.07583 -16.96172 -16.80387 -16.52539 -16.29397 -15.86337 -15.51132 -15.30913 -15.17190 -15.08745 -14.54983 -13.64358 -13.34152 -13.05458 -12.99309 -12.84850 -12.82990 -12.71370 -12.57351 -12.52595 -12.29944 -12.13205 -11.62348 -11.46726 -11.36191 -10.69847 -10.19574 -9.97136 -9.81247 -9.53646 -8.62205 -6.03650 -0.99734 -0.62678 0.81389 1.33105 1.40686 1.53371 1.56812 2.20837 2.24041 2.63982 2.80737 2.92318 3.02677 3.13727 3.21424 3.30208 3.61287 3.92514 4.00699 4.10377 4.14422 4.23779 4.28286 4.38860 4.49777 4.77045 4.88006 4.92498 4.99688 5.16245 5.19952 5.25079 5.28558 5.35241 5.37240 5.73935 5.82898 6.12767 6.40370 6.60428 6.93235 7.34430 7.90857 8.54046 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.016511 B = 0.005442 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.478408 B = 5144.019351 C = 6761.173659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.009 4.009 3 Si 1.007 2.993 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.265 1.265 7 C -0.333 4.333 8 H 0.097 0.903 9 N -0.527 5.527 10 C 0.464 3.536 11 O -0.600 6.600 12 C 0.066 3.934 13 N -0.432 5.432 14 C 0.049 3.951 15 C -0.101 4.101 16 C -0.082 4.082 17 C -0.074 4.074 18 C -0.099 4.099 19 C 0.067 3.933 20 N -0.432 5.432 21 C 0.166 3.834 22 C -0.120 4.120 23 C -0.140 4.140 24 C -0.148 4.148 25 H 0.286 0.714 26 H 0.400 0.600 27 H 0.141 0.859 28 H 0.178 0.822 29 H 0.184 0.816 30 H 0.159 0.841 31 H 0.122 0.878 32 H 0.106 0.894 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.199 -15.976 0.324 16.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.212 4.212 3 Si 0.828 3.172 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.190 1.190 7 C -0.463 4.463 8 H 0.115 0.885 9 N -0.160 5.160 10 C 0.251 3.749 11 O -0.488 6.488 12 C -0.089 4.089 13 N -0.150 5.150 14 C -0.078 4.078 15 C -0.121 4.121 16 C -0.102 4.102 17 C -0.094 4.094 18 C -0.118 4.118 19 C -0.059 4.059 20 N -0.146 5.146 21 C 0.011 3.989 22 C -0.140 4.140 23 C -0.177 4.177 24 C -0.186 4.186 25 H 0.096 0.904 26 H 0.235 0.765 27 H 0.159 0.841 28 H 0.195 0.805 29 H 0.201 0.799 30 H 0.176 0.824 31 H 0.140 0.860 32 H 0.124 0.876 33 H 0.137 0.863 34 H 0.125 0.875 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.729 -15.876 0.328 16.569 hybrid contribution -0.173 1.389 0.022 1.400 sum -4.903 -14.487 0.350 15.298 Atomic orbital electron populations 1.69656 1.07583 1.30443 1.46302 1.26424 0.96553 1.03264 0.94974 0.84790 0.77737 0.75119 0.79519 1.18978 1.19166 1.19020 1.19984 0.93606 0.83242 1.49464 0.88484 1.41898 1.10065 1.04706 1.59293 1.17512 0.87055 0.82880 0.87464 1.90538 1.12913 1.86298 1.59022 1.22361 0.90460 0.96067 0.99981 1.68642 1.07617 1.29850 1.08869 1.20235 0.97059 0.88832 1.01699 1.21131 0.89699 1.01267 0.99987 1.21505 1.02645 0.90522 0.95526 1.21586 0.92891 1.00344 0.94575 1.21089 0.95084 0.95379 1.00218 1.20292 0.90144 0.95697 0.99812 1.68478 1.07979 1.26819 1.11286 1.21549 0.97131 0.87400 0.92805 1.20928 0.85732 1.01434 1.05895 1.23091 1.01889 0.92584 1.00182 1.22857 1.01041 1.02898 0.91826 0.90432 0.76528 0.84126 0.80454 0.79892 0.82388 0.86031 0.87581 0.86336 0.87450 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.27 13.04 21.70 0.28 -48.99 16 2 C -0.01 -0.49 5.50 85.01 0.47 -0.03 16 3 Si 1.01 41.79 29.55 68.60 2.03 43.82 16 4 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 5 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 6 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 7 C -0.33 -19.15 9.68 84.17 0.81 -18.33 16 8 H 0.10 5.71 7.15 -2.91 -0.02 5.69 16 9 N -0.53 -29.69 5.26 -309.52 -1.63 -31.32 16 10 C 0.46 24.98 7.72 86.84 0.67 25.65 16 11 O -0.60 -33.55 12.99 -3.94 -0.05 -33.60 16 12 C 0.07 3.10 6.75 42.25 0.29 3.39 16 13 N -0.43 -19.23 9.65 -177.34 -1.71 -20.95 16 14 C 0.05 1.79 6.60 40.49 0.27 2.06 16 15 C -0.10 -2.75 9.99 22.38 0.22 -2.52 16 16 C -0.08 -1.40 9.95 22.04 0.22 -1.18 16 17 C -0.07 -1.11 9.95 22.07 0.22 -0.89 16 18 C -0.10 -2.19 9.98 22.33 0.22 -1.97 16 19 C 0.07 2.21 6.60 40.34 0.27 2.48 16 20 N -0.43 -15.82 9.41 -175.36 -1.65 -17.47 16 21 C 0.17 6.91 6.49 43.23 0.28 7.19 16 22 C -0.12 -4.60 4.39 -11.54 -0.05 -4.65 16 23 C -0.14 -3.99 10.03 30.62 0.31 -3.68 16 24 C -0.15 -4.81 10.24 30.62 0.31 -4.50 16 25 H 0.29 14.37 8.31 -92.71 -0.77 13.60 16 26 H 0.40 22.58 7.24 -92.70 -0.67 21.91 16 27 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 28 H 0.18 1.49 8.06 -2.91 -0.02 1.47 16 29 H 0.18 1.01 8.06 -2.91 -0.02 0.98 16 30 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 31 H 0.12 5.24 6.39 -2.39 -0.02 5.22 16 32 H 0.11 2.90 7.56 -2.39 -0.02 2.88 16 33 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 34 H 0.11 3.26 8.14 -2.38 -0.02 3.24 16 35 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -70.72 308.38 2.25 -68.47 By element: Atomic # 1 Polarization: 36.55 SS G_CDS: 0.47 Total: 37.02 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 4.51 Total: 3.02 kcal Atomic # 7 Polarization: -114.02 SS G_CDS: -4.71 Total: -118.72 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -0.05 Total: -33.60 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -70.72 2.25 -68.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448846563.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.711 kcal (2) G-P(sol) polarization free energy of solvation -70.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds