Wall clock time and date at job start Tue Mar 31 2020 05:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86808 * 119.99769 * 2 1 4 4 H 1.48501 * 109.46998 * 275.41790 * 3 2 1 5 5 H 1.48505 * 109.46819 * 35.41752 * 3 2 1 6 6 H 1.48499 * 109.46727 * 155.41924 * 3 2 1 7 7 C 1.39863 * 120.00422 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99542 * 341.71496 * 7 2 1 9 9 C 1.41119 * 120.00120 * 161.72355 * 7 2 1 10 10 C 1.40905 * 120.15156 * 330.10124 * 9 7 2 11 11 C 1.36347 * 119.85896 * 179.74081 * 10 9 7 12 12 C 1.39552 * 120.16682 * 0.54156 * 11 10 9 13 13 N 1.38906 * 119.84503 * 179.75348 * 12 11 10 14 14 C 1.46497 * 120.00037 * 359.73052 * 13 12 11 15 15 C 1.53000 * 109.47249 * 179.97438 * 14 13 12 16 16 C 1.52993 * 109.47182 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.47051 * 180.02562 * 16 15 14 18 18 C 1.53006 * 109.47300 * 180.02562 * 17 16 15 19 19 O 1.42894 * 109.46972 * 179.97438 * 18 17 16 20 20 C 1.39661 * 120.30647 * 359.48605 * 12 11 10 21 21 Cl 1.73600 * 119.92962 * 180.25349 * 20 12 11 22 22 C 1.36435 * 120.14175 * 0.22372 * 20 12 11 23 23 H 0.97000 * 120.00370 * 0.02562 * 1 2 3 24 24 H 1.08000 * 120.07465 * 0.03302 * 10 9 7 25 25 H 1.07999 * 119.92056 * 180.29785 * 11 10 9 26 26 H 0.96999 * 119.99751 * 179.72505 * 13 12 11 27 27 H 1.09001 * 109.47187 * 59.99694 * 14 13 12 28 28 H 1.09002 * 109.46917 * 299.99971 * 14 13 12 29 29 H 1.08996 * 109.47204 * 300.00094 * 15 14 13 30 30 H 1.09001 * 109.46793 * 60.00044 * 15 14 13 31 31 H 1.09001 * 109.47772 * 300.00212 * 16 15 14 32 32 H 1.09001 * 109.46999 * 60.00441 * 16 15 14 33 33 H 1.09001 * 109.46787 * 299.99714 * 17 16 15 34 34 H 1.08991 * 109.47256 * 60.00083 * 17 16 15 35 35 H 1.09002 * 109.46769 * 300.00217 * 18 17 16 36 36 H 1.09003 * 109.47045 * 59.99296 * 18 17 16 37 37 H 0.96706 * 113.99444 * 180.02562 * 19 18 17 38 38 H 1.07999 * 120.08777 * 180.02562 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.3760 2.1126 -1.3938 5 1 1.5023 2.6170 0.8114 6 1 3.5931 1.4099 0.5824 7 6 2.0085 -1.2112 -0.0005 8 1 1.5093 -2.1230 0.2925 9 6 3.3663 -1.2418 -0.3838 10 6 3.8592 -0.3091 -1.3179 11 6 5.1733 -0.3407 -1.6800 12 6 6.0276 -1.3010 -1.1364 13 7 7.3641 -1.3303 -1.5139 14 6 7.8724 -0.3584 -2.4850 15 6 9.3631 -0.6073 -2.7232 16 6 9.8939 0.4074 -3.7378 17 6 11.3845 0.1580 -3.9764 18 6 11.9155 1.1731 -4.9906 19 8 13.3077 0.9406 -5.2130 20 6 5.5463 -2.2292 -0.2105 21 17 6.6192 -3.4154 0.4645 22 6 4.2349 -2.2053 0.1652 23 1 -0.4851 0.8400 -0.0004 24 1 3.1986 0.4322 -1.7427 25 1 5.5532 0.3767 -2.3923 26 1 7.9607 -1.9943 -1.1344 27 1 7.7302 0.6506 -2.0977 28 1 7.3309 -0.4665 -3.4248 29 1 9.9043 -0.4989 -1.7833 30 1 9.5057 -1.6162 -3.1102 31 1 9.3527 0.2986 -4.6777 32 1 9.7513 1.4164 -3.3511 33 1 11.9260 0.2666 -3.0367 34 1 11.5267 -0.8510 -4.3632 35 1 11.3739 1.0650 -5.9304 36 1 11.7732 2.1821 -4.6034 37 1 13.7118 1.5493 -5.8465 38 1 3.8638 -2.9231 0.8817 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453140144.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:59 Heat of formation + Delta-G solvation = -61.361186 kcal Electronic energy + Delta-G solvation = -19036.340553 eV Core-core repulsion = 15903.169931 eV Total energy + Delta-G solvation = -3133.170622 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.108 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.57105 -37.64730 -36.22411 -35.66745 -34.37651 -33.04748 -30.67236 -29.78496 -28.68306 -25.66398 -23.77948 -22.49855 -21.54866 -21.05220 -20.13437 -17.65097 -17.54834 -16.71949 -16.34788 -15.30531 -15.08282 -15.04682 -14.44873 -14.27141 -13.53487 -13.50120 -13.00858 -12.77184 -12.70726 -12.55497 -12.35007 -11.97055 -11.70099 -11.43192 -11.20104 -11.07493 -10.92705 -10.88695 -10.70334 -10.44286 -10.32689 -10.28565 -9.93920 -9.63528 -9.34953 -8.80659 -7.80644 -6.88023 -6.72121 -4.29827 2.42000 2.60429 3.03376 3.11036 3.22537 3.33112 3.74528 4.00666 4.17484 4.45455 4.60402 4.76373 4.86260 4.95669 5.07871 5.29381 5.34336 5.40978 5.52065 5.59811 5.68143 5.81805 5.82950 5.94478 6.14386 6.16213 6.22179 6.49624 6.63358 6.86388 7.01267 7.24317 7.25782 7.29825 7.73310 7.83470 8.11361 8.36874 8.43522 8.65297 8.83767 10.15541 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.019149 B = 0.003546 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.842851 B = 7893.545958 C = 9152.283217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.083 3.917 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.291 1.291 6 H -0.245 1.245 7 C -0.449 4.449 8 H 0.090 0.910 9 C 0.068 3.932 10 C -0.193 4.193 11 C -0.134 4.134 12 C 0.103 3.897 13 N -0.758 5.758 14 C 0.135 3.865 15 C -0.128 4.128 16 C -0.113 4.113 17 C -0.120 4.120 18 C 0.074 3.926 19 O -0.577 6.577 20 C -0.050 4.050 21 Cl -0.117 7.117 22 C -0.164 4.164 23 H 0.283 0.717 24 H 0.106 0.894 25 H 0.103 0.897 26 H 0.391 0.609 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.046 0.954 36 H 0.045 0.955 37 H 0.379 0.621 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.742 3.385 -7.432 19.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.134 4.134 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.168 1.168 7 C -0.478 4.478 8 H 0.108 0.892 9 C 0.064 3.936 10 C -0.213 4.213 11 C -0.156 4.156 12 C 0.003 3.997 13 N -0.395 5.395 14 C 0.010 3.990 15 C -0.166 4.166 16 C -0.151 4.151 17 C -0.158 4.158 18 C -0.004 4.004 19 O -0.383 6.383 20 C -0.080 4.080 21 Cl -0.089 7.089 22 C -0.184 4.184 23 H 0.093 0.907 24 H 0.124 0.876 25 H 0.121 0.879 26 H 0.225 0.775 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.225 0.775 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 17.434 3.043 -7.039 19.047 hybrid contribution 0.536 0.918 -0.250 1.092 sum 17.971 3.961 -7.289 19.793 Atomic orbital electron populations 1.69726 1.07944 1.29948 1.36462 1.26073 0.94683 1.01392 0.91245 0.86394 0.81393 0.80231 0.78675 1.19798 1.21868 1.16807 1.19250 0.92898 0.96111 1.39563 0.89244 1.17507 0.93200 0.91556 0.91363 1.20753 0.95012 1.03581 1.01959 1.19916 0.93714 0.99129 1.02853 1.16959 0.84847 0.98130 0.99721 1.43956 1.07433 1.38064 1.50037 1.21069 0.92702 0.92769 0.92451 1.21720 0.95641 0.99698 0.99544 1.21405 0.94421 0.99687 0.99630 1.21528 0.95575 0.99453 0.99230 1.22240 0.81482 0.98342 0.98324 1.86480 1.23712 1.60840 1.67256 1.19969 0.91372 0.94623 1.01997 1.98248 1.66861 1.58607 1.85208 1.20561 0.90330 1.04022 1.03534 0.90659 0.87631 0.87850 0.77475 0.93307 0.93220 0.91452 0.91434 0.91473 0.91495 0.91217 0.91197 0.93613 0.93630 0.77477 0.86943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.80 13.93 55.54 0.77 -21.02 16 2 C 0.08 2.18 5.40 -17.34 -0.09 2.09 16 3 Si 0.91 20.56 24.51 -169.99 -4.17 16.39 16 4 H -0.27 -5.93 6.70 56.52 0.38 -5.55 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.24 -5.69 6.87 56.52 0.39 -5.30 16 7 C -0.45 -12.04 9.55 -37.88 -0.36 -12.40 16 8 H 0.09 2.52 8.06 -52.48 -0.42 2.09 16 9 C 0.07 1.69 5.10 -106.80 -0.54 1.15 16 10 C -0.19 -4.53 7.11 -39.25 -0.28 -4.81 16 11 C -0.13 -2.81 9.23 -39.77 -0.37 -3.17 16 12 C 0.10 2.07 6.67 -83.63 -0.56 1.51 16 13 N -0.76 -12.49 5.66 -58.46 -0.33 -12.82 16 14 C 0.14 1.79 4.89 -4.04 -0.02 1.77 16 15 C -0.13 -1.31 5.33 -26.73 -0.14 -1.45 16 16 C -0.11 -0.95 5.21 -26.73 -0.14 -1.09 16 17 C -0.12 -1.01 5.58 -26.73 -0.15 -1.16 16 18 C 0.07 0.56 7.05 37.16 0.26 0.82 16 19 O -0.58 -4.87 13.66 -35.23 -0.48 -5.35 16 20 C -0.05 -1.05 6.30 -39.70 -0.25 -1.30 16 21 Cl -0.12 -2.10 27.55 -51.86 -1.43 -3.53 16 22 C -0.16 -3.79 9.50 -39.24 -0.37 -4.17 16 23 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 24 H 0.11 2.46 4.73 -52.49 -0.25 2.22 16 25 H 0.10 1.90 6.68 -52.49 -0.35 1.55 16 26 H 0.39 6.07 7.11 -40.82 -0.29 5.78 16 27 H 0.05 0.66 7.92 -51.93 -0.41 0.25 16 28 H 0.05 0.67 7.94 -51.93 -0.41 0.25 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.38 1.41 9.12 45.56 0.42 1.82 16 38 H 0.11 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 325.96 15.07 4.91 4.91 Total: -1.00 -28.55 325.96 -8.43 -36.98 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -4.70 Total: 6.64 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: -3.02 Total: -22.21 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.44 Total: -33.84 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -0.48 Total: -5.35 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.17 Total: 16.39 kcal Atomic # 17 Polarization: -2.10 SS G_CDS: -1.43 Total: -3.53 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.55 -8.43 -36.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453140144.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.378 kcal (2) G-P(sol) polarization free energy of solvation -28.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds