Wall clock time and date at job start Tue Mar 31 2020 05:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00297 * 2 1 4 4 C 1.53003 * 109.46900 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46920 * 65.00116 * 4 3 2 6 6 C 1.37092 * 120.00341 * 264.54823 * 5 4 3 7 7 H 1.07994 * 120.00784 * 145.64701 * 6 5 4 8 8 C 1.38960 * 119.99566 * 325.65156 * 6 5 4 9 9 N 1.31406 * 119.99738 * 338.15724 * 8 6 5 10 10 Si 1.86798 * 119.99810 * 158.16230 * 8 6 5 11 11 H 1.48493 * 109.47449 * 89.99885 * 10 8 6 12 12 H 1.48502 * 109.47161 * 210.00153 * 10 8 6 13 13 H 1.48499 * 109.47210 * 329.99700 * 10 8 6 14 14 C 1.34779 * 120.00267 * 84.54427 * 5 4 3 15 15 O 1.21297 * 119.99866 * 0.02562 * 14 5 4 16 16 C 1.50699 * 120.00344 * 179.97438 * 14 5 4 17 17 C 1.53000 * 109.47125 * 180.02562 * 16 14 5 18 18 C 1.50699 * 109.47125 * 180.02562 * 17 16 14 19 19 C 1.33390 * 125.20369 * 89.99519 * 18 17 16 20 20 C 1.38420 * 114.92444 * 179.97438 * 19 18 17 21 21 C 1.33396 * 114.91812 * 0.02562 * 20 19 18 22 22 S 1.75879 * 125.20466 * 269.69302 * 18 17 16 23 23 H 1.09004 * 109.46792 * 59.99906 * 1 2 3 24 24 H 1.08988 * 109.47253 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46784 * 300.00659 * 1 2 3 26 26 H 1.09004 * 109.47028 * 60.00141 * 3 2 1 27 27 H 1.08994 * 109.46799 * 299.99963 * 3 2 1 28 28 H 1.08991 * 109.47498 * 305.00146 * 4 3 2 29 29 H 1.08998 * 109.46736 * 184.99792 * 4 3 2 30 30 H 0.97004 * 119.99228 * 180.02562 * 9 8 6 31 31 H 1.08998 * 109.47055 * 60.00142 * 16 14 5 32 32 H 1.09001 * 109.46901 * 299.99940 * 16 14 5 33 33 H 1.08998 * 109.47556 * 59.99814 * 17 16 14 34 34 H 1.09002 * 109.47178 * 299.99552 * 17 16 14 35 35 H 1.08005 * 122.54216 * 359.96158 * 19 18 17 36 36 H 1.08000 * 122.54175 * 180.02562 * 20 19 18 37 37 H 1.07997 * 125.20091 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.2055 -0.7869 -1.3028 7 1 3.9865 -1.3375 -2.2057 8 6 4.7191 -1.4477 -0.1935 9 7 5.3771 -0.7763 0.7247 10 14 4.4742 -3.2902 -0.0077 11 1 5.6058 -4.0071 -0.6486 12 1 4.4203 -3.6394 1.4346 13 1 3.2019 -3.6889 -0.6614 14 6 4.1575 1.3206 -2.3514 15 8 3.9555 2.5157 -2.3054 16 6 4.6119 0.6822 -3.6386 17 6 4.7386 1.7544 -4.7227 18 6 5.1924 1.1159 -6.0101 19 6 4.3847 0.6253 -6.9515 20 6 5.0303 0.0861 -8.0509 21 6 6.3623 0.1384 -8.0020 22 16 6.8676 0.9105 -6.5047 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0275 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 1.6887 1.8464 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 3.8509 0.5684 0.8426 29 1 3.9786 2.1764 0.0902 30 1 5.7359 -1.2377 1.4989 31 1 3.8828 -0.0657 -3.9504 32 1 5.5797 0.2046 -3.4855 33 1 5.4678 2.5021 -4.4108 34 1 3.7710 2.2324 -4.8759 35 1 3.3085 0.6468 -6.8627 36 1 4.4960 -0.3443 -8.8850 37 1 7.0283 -0.2320 -8.7672 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457182552.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:46 Heat of formation + Delta-G solvation = -48.613914 kcal Electronic energy + Delta-G solvation = -20135.542960 eV Core-core repulsion = 17004.968807 eV Total energy + Delta-G solvation = -3130.574153 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.77309 -37.69949 -36.92402 -34.74576 -33.07152 -31.54338 -29.60233 -28.04394 -25.83608 -24.93798 -24.30866 -22.54070 -21.22823 -19.04584 -18.94877 -17.03367 -16.73239 -16.01393 -15.43407 -15.38563 -15.10806 -14.52714 -14.34502 -14.25707 -13.94164 -13.19039 -12.87776 -12.70753 -12.49354 -11.98683 -11.89480 -11.69505 -11.47653 -11.28472 -11.14710 -11.02129 -10.94146 -10.65060 -10.55051 -10.33512 -10.24932 -9.99078 -9.12354 -8.94710 -8.56426 -8.31893 -8.25797 -7.49190 -6.31542 -3.94678 1.18678 1.82298 2.20103 2.91589 3.18106 3.28259 3.34799 3.92247 4.19629 4.52294 4.73998 5.07159 5.15502 5.23313 5.55507 5.67278 5.70541 5.73119 5.76408 5.82266 5.98778 6.02466 6.09668 6.21641 6.25897 6.36713 6.45247 6.49546 6.55819 6.71921 6.76757 6.80091 7.31406 7.52066 7.83248 8.01776 8.41800 9.15479 9.55753 9.97381 10.71447 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.016440 B = 0.004954 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.709435 B = 5650.561426 C = 6337.169081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.052 3.948 4 C 0.113 3.887 5 N -0.427 5.427 6 C -0.323 4.323 7 H 0.088 0.912 8 C 0.048 3.952 9 N -0.863 5.863 10 Si 0.913 3.087 11 H -0.280 1.280 12 H -0.283 1.283 13 H -0.268 1.268 14 C 0.465 3.535 15 O -0.614 6.614 16 C -0.110 4.110 17 C -0.035 4.035 18 C -0.149 4.149 19 C -0.155 4.155 20 C -0.129 4.129 21 C -0.230 4.230 22 S 0.093 5.907 23 H 0.031 0.969 24 H 0.077 0.923 25 H 0.030 0.970 26 H 0.038 0.962 27 H 0.041 0.959 28 H 0.117 0.883 29 H 0.068 0.932 30 H 0.268 0.732 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.308 0.380 -9.481 9.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.025 4.025 4 C -0.011 4.011 5 N -0.144 5.144 6 C -0.451 4.451 7 H 0.105 0.895 8 C -0.157 4.157 9 N -0.500 5.500 10 Si 0.740 3.260 11 H -0.206 1.206 12 H -0.209 1.209 13 H -0.193 1.193 14 C 0.254 3.746 15 O -0.502 6.502 16 C -0.151 4.151 17 C -0.075 4.075 18 C -0.267 4.267 19 C -0.184 4.184 20 C -0.160 4.160 21 C -0.365 4.365 22 S 0.356 5.644 23 H 0.050 0.950 24 H 0.095 0.905 25 H 0.048 0.952 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.134 0.866 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.156 0.844 36 H 0.152 0.848 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.789 1.088 -8.617 8.722 hybrid contribution -1.722 -1.262 -0.464 2.185 sum -2.512 -0.174 -9.081 9.423 Atomic orbital electron populations 1.22641 0.83480 1.01698 0.98817 1.88134 1.17331 1.27817 1.95035 1.23039 0.96642 0.84240 0.98600 1.21480 0.89092 0.99057 0.91492 1.43350 1.56004 1.07354 1.07678 1.19291 1.42212 0.82081 1.01520 0.89461 1.25218 0.94031 0.99857 0.96591 1.69907 1.31200 1.37110 1.11822 0.86162 0.78895 0.83266 0.77665 1.20600 1.20855 1.19303 1.20355 0.81343 0.86309 0.86582 1.90508 1.58167 1.15375 1.86172 1.21324 1.03374 0.97798 0.92576 1.19962 1.02335 0.97082 0.88083 1.24761 0.95205 1.05483 1.01213 1.20121 1.01091 1.02989 0.94217 1.20126 0.93584 1.02559 0.99753 1.25529 0.99106 1.09705 1.02169 1.84348 1.07943 1.57996 1.14130 0.95008 0.90459 0.95184 0.94371 0.94087 0.86590 0.91334 0.92156 0.90191 0.89465 0.90412 0.89779 0.84431 0.84754 0.82380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.37 -7.86 10.44 -35.23 -0.37 -8.23 16 3 C 0.05 1.11 6.24 37.16 0.23 1.34 16 4 C 0.11 2.72 5.29 -4.04 -0.02 2.69 16 5 N -0.43 -10.76 2.51 -114.81 -0.29 -11.05 16 6 C -0.32 -8.28 8.48 -14.93 -0.13 -8.40 16 7 H 0.09 2.16 6.98 -52.49 -0.37 1.80 16 8 C 0.05 1.23 4.93 -17.47 -0.09 1.15 16 9 N -0.86 -22.94 11.34 55.50 0.63 -22.31 16 10 Si 0.91 20.16 29.61 -169.99 -5.03 15.12 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 14 C 0.46 11.20 7.60 -10.99 -0.08 11.11 16 15 O -0.61 -15.79 15.65 5.54 0.09 -15.70 16 16 C -0.11 -2.21 4.34 -27.88 -0.12 -2.33 16 17 C -0.03 -0.61 5.00 -27.88 -0.14 -0.75 16 18 C -0.15 -2.29 5.76 -36.00 -0.21 -2.50 16 19 C -0.15 -2.15 10.05 -41.21 -0.41 -2.56 16 20 C -0.13 -1.58 10.18 -41.21 -0.42 -2.00 16 21 C -0.23 -2.77 11.23 29.04 0.33 -2.44 16 22 S 0.09 1.29 23.33 -107.50 -2.51 -1.22 16 23 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.08 1.12 8.14 -51.94 -0.42 0.69 16 25 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.12 3.00 5.37 -51.93 -0.28 2.72 16 29 H 0.07 1.66 7.59 -51.93 -0.39 1.26 16 30 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 31 H 0.08 1.54 7.65 -51.93 -0.40 1.15 16 32 H 0.09 1.79 8.10 -51.93 -0.42 1.37 16 33 H 0.08 1.41 8.10 -51.93 -0.42 0.98 16 34 H 0.08 1.46 8.10 -51.93 -0.42 1.04 16 35 H 0.14 1.74 8.06 -52.48 -0.42 1.31 16 36 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.16 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 329.37 15.07 4.96 4.96 Total: -1.00 -29.38 329.37 -7.68 -37.06 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -5.22 Total: 4.44 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 0.05 Total: -3.08 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.34 Total: -33.37 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.28 Total: -23.93 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.12 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.51 Total: -1.22 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.38 -7.68 -37.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457182552.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.553 kcal (2) G-P(sol) polarization free energy of solvation -29.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds