Wall clock time and date at job start Tue Mar 31 2020 05:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31332 * 1 3 3 Si 1.86795 * 120.00192 * 2 1 4 4 H 1.48501 * 109.47255 * 270.00238 * 3 2 1 5 5 H 1.48497 * 109.47141 * 30.00170 * 3 2 1 6 6 H 1.48505 * 109.47142 * 149.99849 * 3 2 1 7 7 C 1.39109 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99966 * 359.97438 * 7 2 1 9 9 N 1.36726 * 120.00002 * 180.02562 * 7 2 1 10 10 C 1.34782 * 119.99584 * 179.97438 * 9 7 2 11 11 O 1.21774 * 120.00136 * 359.97438 * 10 9 7 12 12 C 1.41841 * 119.99687 * 179.97438 * 10 9 7 13 13 C 1.35133 * 120.00043 * 173.78215 * 12 10 9 14 14 C 1.46914 * 119.99784 * 347.60125 * 13 12 10 15 15 C 1.39919 * 120.21701 * 314.12545 * 14 13 12 16 16 C 1.37783 * 119.88314 * 179.97438 * 15 14 13 17 17 C 1.38568 * 120.34259 * 359.97438 * 16 15 14 18 18 C 1.38148 * 120.44024 * 0.03510 * 17 16 15 19 19 C 1.38666 * 120.10424 * 359.70911 * 18 17 16 20 20 N 1.39724 * 120.16833 * 180.29919 * 19 18 17 21 21 C 1.35840 * 126.10361 * 354.50625 * 20 19 18 22 22 C 1.35295 * 107.61745 * 179.97438 * 21 20 19 23 23 C 1.39958 * 107.96855 * 0.02562 * 22 21 20 24 24 N 1.30840 * 108.36444 * 359.74083 * 23 22 21 25 25 H 0.97005 * 119.99490 * 359.97438 * 1 2 3 26 26 H 0.96991 * 120.00350 * 359.97438 * 9 7 2 27 27 H 1.08001 * 120.00146 * 354.05918 * 12 10 9 28 28 H 1.07999 * 120.00059 * 167.59737 * 13 12 10 29 29 H 1.07998 * 120.05787 * 0.02562 * 15 14 13 30 30 H 1.08010 * 119.82782 * 179.97438 * 16 15 14 31 31 H 1.07995 * 119.78062 * 180.02562 * 17 16 15 32 32 H 1.07998 * 119.94471 * 179.97438 * 18 17 16 33 33 H 1.08003 * 126.19509 * 359.96528 * 21 20 19 34 34 H 1.08002 * 126.01642 * 180.02562 * 22 21 20 35 35 H 1.07993 * 125.81546 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2474 1.6177 0.0000 4 1 2.4948 2.0464 -1.4001 5 1 1.4449 2.6526 0.7001 6 1 3.5449 1.4401 0.7001 7 6 2.0089 -1.2047 -0.0005 8 1 1.4688 -2.1401 -0.0005 9 7 3.3761 -1.2047 0.0000 10 6 4.0499 -2.3720 0.0000 11 8 3.4410 -3.4266 0.0000 12 6 5.4684 -2.3721 0.0000 13 6 6.1440 -3.5355 0.1267 14 6 5.4351 -4.7559 0.5345 15 6 4.5361 -4.7233 1.6063 16 6 3.8746 -5.8719 1.9825 17 6 4.0943 -7.0603 1.3045 18 6 4.9789 -7.1081 0.2445 19 6 5.6506 -5.9620 -0.1531 20 7 6.5409 -6.0075 -1.2289 21 6 6.9220 -7.1218 -1.9060 22 6 7.7896 -6.7382 -2.8706 23 6 7.9462 -5.3501 -2.7833 24 7 7.1960 -4.9114 -1.8053 25 1 -0.4850 0.8401 0.0004 26 1 3.8611 -0.3648 0.0004 27 1 6.0084 -1.4418 -0.0968 28 1 7.2051 -3.5681 -0.0718 29 1 4.3605 -3.7994 2.1371 30 1 3.1812 -5.8458 2.8102 31 1 3.5705 -7.9550 1.6069 32 1 5.1443 -8.0387 -0.2779 33 1 6.5922 -8.1314 -1.7097 34 1 8.2758 -7.3886 -3.5827 35 1 8.5752 -4.7440 -3.4183 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492037439.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:48 Heat of formation + Delta-G solvation = 115.898767 kcal Electronic energy + Delta-G solvation = -21283.269175 eV Core-core repulsion = 18056.677628 eV Total energy + Delta-G solvation = -3226.591548 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.35801 -39.22478 -37.98518 -34.39535 -33.36425 -32.87858 -31.78578 -30.17827 -29.56225 -28.50221 -25.51541 -23.33405 -23.22962 -21.25655 -20.49319 -20.26771 -19.10877 -18.21976 -17.47484 -16.44264 -15.36322 -15.21512 -15.09434 -14.82286 -14.47944 -13.84025 -13.61631 -13.53865 -13.28679 -13.11017 -12.84643 -12.67097 -12.49158 -12.07388 -11.93526 -11.28440 -11.16523 -10.83490 -10.64861 -10.59453 -10.13170 -10.06023 -9.65574 -9.34613 -9.03588 -8.54121 -8.25352 -7.83560 -7.43064 -6.44150 -3.83417 1.00440 1.39471 2.33047 2.41697 2.57173 2.82289 3.00680 3.04606 3.10599 4.02048 4.18426 4.34144 4.60168 4.77921 4.91593 5.08834 5.10896 5.27428 5.37507 5.38325 5.58937 5.66354 5.80660 5.88094 5.90370 5.96804 6.08771 6.32292 6.46082 6.60975 6.65462 6.80576 6.93598 6.99871 7.09813 7.43884 7.51736 7.73948 8.12180 8.54374 8.89666 9.36116 9.88424 10.67900 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.021071 B = 0.004839 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.534093 B = 5784.421495 C = 6611.044814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.040 3.960 3 Si 0.881 3.119 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.293 4.293 8 H 0.122 0.878 9 N -0.572 5.572 10 C 0.459 3.541 11 O -0.575 6.575 12 C -0.187 4.187 13 C -0.047 4.047 14 C -0.030 4.030 15 C -0.012 4.012 16 C -0.136 4.136 17 C -0.096 4.096 18 C -0.154 4.154 19 C 0.150 3.850 20 N -0.307 5.307 21 C 0.048 3.952 22 C -0.268 4.268 23 C 0.039 3.961 24 N -0.278 5.278 25 H 0.276 0.724 26 H 0.371 0.629 27 H 0.115 0.885 28 H 0.133 0.867 29 H 0.125 0.875 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.174 0.826 34 H 0.149 0.851 35 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.992 -10.715 -0.015 18.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.164 4.164 3 Si 0.706 3.294 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.423 4.423 8 H 0.140 0.860 9 N -0.207 5.207 10 C 0.251 3.749 11 O -0.462 6.462 12 C -0.209 4.209 13 C -0.069 4.069 14 C -0.032 4.032 15 C -0.031 4.031 16 C -0.154 4.154 17 C -0.115 4.115 18 C -0.175 4.175 19 C 0.057 3.943 20 N -0.083 5.083 21 C -0.095 4.095 22 C -0.296 4.296 23 C -0.147 4.147 24 N -0.097 5.097 25 H 0.087 0.913 26 H 0.204 0.796 27 H 0.132 0.868 28 H 0.151 0.849 29 H 0.142 0.858 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.191 0.809 34 H 0.167 0.833 35 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 13.898 -10.213 0.672 17.260 hybrid contribution 0.672 0.774 -0.824 1.315 sum 14.570 -9.439 -0.152 17.360 Atomic orbital electron populations 1.69597 1.05853 1.27920 1.47316 1.25157 0.95562 0.98296 0.97431 0.86638 0.79930 0.83631 0.79154 1.19416 1.19961 1.19217 1.19546 0.79752 0.96705 1.46265 0.85994 1.42372 1.07621 1.06773 1.63959 1.16720 0.87555 0.84466 0.86174 1.90737 1.69977 1.29717 1.55747 1.22107 0.95256 0.97949 1.05585 1.21985 0.99045 0.90469 0.95378 1.18533 0.97773 0.91237 0.95687 1.21030 0.90894 0.97412 0.93807 1.20984 1.00634 0.92665 1.01138 1.20827 0.97259 0.98185 0.95186 1.20446 1.00408 0.96113 1.00529 1.17550 0.93448 0.95219 0.88045 1.45918 1.33246 1.04906 1.24183 1.22705 0.98727 0.93137 0.94902 1.21506 1.07443 0.95774 1.04918 1.24063 0.98880 0.94913 0.96832 1.77560 1.11310 1.08845 1.11961 0.91331 0.79610 0.86750 0.84942 0.85756 0.85960 0.85842 0.86143 0.80860 0.83303 0.79831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.00 13.95 55.50 0.77 -24.22 16 2 C 0.04 1.09 5.50 -17.44 -0.10 1.00 16 3 Si 0.88 19.32 27.74 -169.99 -4.71 14.61 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 7 C -0.29 -8.27 10.16 -15.05 -0.15 -8.43 16 8 H 0.12 3.92 7.38 -52.48 -0.39 3.53 16 9 N -0.57 -13.97 5.07 -13.55 -0.07 -14.04 16 10 C 0.46 10.90 6.68 -14.88 -0.10 10.80 16 11 O -0.58 -15.31 11.82 5.12 0.06 -15.25 16 12 C -0.19 -3.61 9.70 -39.31 -0.38 -3.99 16 13 C -0.05 -0.85 7.91 -37.18 -0.29 -1.14 16 14 C -0.03 -0.57 4.38 -104.91 -0.46 -1.03 16 15 C -0.01 -0.23 6.76 -39.12 -0.26 -0.49 16 16 C -0.14 -2.19 10.02 -39.63 -0.40 -2.59 16 17 C -0.10 -1.37 10.03 -39.49 -0.40 -1.77 16 18 C -0.15 -2.27 9.45 -39.46 -0.37 -2.64 16 19 C 0.15 2.59 6.70 -83.25 -0.56 2.03 16 20 N -0.31 -4.95 3.80 -10.31 -0.04 -4.99 16 21 C 0.05 0.60 10.81 -16.83 -0.18 0.42 16 22 C -0.27 -3.03 10.80 -39.99 -0.43 -3.46 16 23 C 0.04 0.50 12.02 -17.33 -0.21 0.29 16 24 N -0.28 -4.52 9.15 30.64 0.28 -4.24 16 25 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 26 H 0.37 8.04 5.72 -40.82 -0.23 7.81 16 27 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 28 H 0.13 2.19 6.76 -52.49 -0.35 1.83 16 29 H 0.12 2.38 7.30 -52.49 -0.38 2.00 16 30 H 0.12 1.72 8.06 -52.48 -0.42 1.30 16 31 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.12 1.37 6.77 -52.49 -0.36 1.02 16 33 H 0.17 1.55 7.09 -52.48 -0.37 1.18 16 34 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.18 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 302.79 15.07 4.56 4.56 Total: -1.00 -33.77 302.79 -6.81 -40.58 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -3.37 Total: 14.00 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -4.29 Total: -11.00 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: 0.95 Total: -47.50 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.06 Total: -15.25 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.71 Total: 14.61 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.77 -6.81 -40.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492037439.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.477 kcal (2) G-P(sol) polarization free energy of solvation -33.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds