Wall clock time and date at job start Tue Mar 31 2020 05:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86796 * 119.99798 * 2 1 4 4 H 1.48508 * 109.47063 * 239.99691 * 3 2 1 5 5 H 1.48487 * 109.47406 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47230 * 120.00344 * 3 2 1 7 7 C 1.39909 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99821 * 175.55166 * 7 2 1 9 9 C 1.41118 * 120.00241 * 355.55913 * 7 2 1 10 10 C 1.40885 * 120.15948 * 214.77957 * 9 7 2 11 11 C 1.36345 * 119.83310 * 180.02562 * 10 9 7 12 12 C 1.39536 * 120.16558 * 0.02562 * 11 10 9 13 13 N 1.39045 * 119.84081 * 179.97438 * 12 11 10 14 14 C 1.34773 * 120.00099 * 35.31651 * 13 12 11 15 15 O 1.21792 * 119.99836 * 355.71478 * 14 13 12 16 16 C 1.41493 * 120.00348 * 175.71818 * 14 13 12 17 17 C 1.35594 * 120.00032 * 179.97438 * 16 14 13 18 18 C 1.41768 * 119.99894 * 180.27753 * 17 16 14 19 19 C 1.38093 * 126.95214 * 179.75486 * 18 17 16 20 20 N 1.33316 * 107.57409 * 179.97438 * 19 18 17 21 21 C 1.30827 * 109.79363 * 359.97438 * 20 19 18 22 22 N 1.34669 * 109.43650 * 359.72420 * 21 20 19 23 23 H 0.96997 * 126.44847 * 180.27567 * 22 21 20 24 24 C 1.39536 * 120.32392 * 0.25178 * 12 11 10 25 25 C 1.36353 * 120.16294 * 359.48509 * 24 12 11 26 26 H 0.96997 * 120.00207 * 359.97438 * 1 2 3 27 27 H 1.08005 * 120.08620 * 0.02562 * 10 9 7 28 28 H 1.08001 * 119.92277 * 179.97438 * 11 10 9 29 29 H 0.97003 * 120.00423 * 215.32074 * 13 12 11 30 30 H 1.08002 * 119.99533 * 0.02562 * 16 14 13 31 31 H 1.07997 * 120.00311 * 0.02562 * 17 16 14 32 32 H 1.07996 * 126.20867 * 0.02562 * 19 18 17 33 33 H 1.07998 * 125.28108 * 180.02562 * 21 20 19 34 34 H 1.07999 * 119.92116 * 179.71792 * 24 12 11 35 35 H 1.07994 * 120.08580 * 180.22877 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0965 1.6964 -1.2125 5 1 1.2778 2.7464 -0.0006 6 1 3.0965 1.6964 1.2124 7 6 2.0083 -1.2117 0.0005 8 1 3.0858 -1.2131 -0.0720 9 6 1.3059 -2.4319 0.0957 10 6 1.8654 -3.5178 0.7977 11 6 1.1812 -4.6939 0.8850 12 6 -0.0699 -4.8238 0.2809 13 7 -0.7615 -6.0265 0.3737 14 6 -0.6802 -6.7656 1.4978 15 8 0.0596 -6.4201 2.4015 16 6 -1.4542 -7.9428 1.6280 17 6 -1.3720 -8.6866 2.7588 18 6 -2.1431 -9.8693 2.8868 19 6 -2.1673 -10.7319 3.9650 20 7 -3.0231 -11.7126 3.6767 21 6 -3.5355 -11.5185 2.4887 22 7 -3.0283 -10.3881 1.9611 23 1 -3.2418 -10.0108 1.0934 24 6 -0.6278 -3.7546 -0.4209 25 6 0.0424 -2.5706 -0.5121 26 1 -0.4850 0.8400 0.0004 27 1 2.8338 -3.4188 1.2655 28 1 1.6089 -5.5273 1.4224 29 1 -1.3025 -6.3336 -0.3705 30 1 -2.1099 -8.2493 0.8264 31 1 -0.7160 -8.3803 3.5601 32 1 -1.5971 -10.6299 4.8765 33 1 -4.2574 -12.1621 2.0080 34 1 -1.5945 -3.8638 -0.8899 35 1 -0.3922 -1.7427 -1.0525 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492915670.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:56 Heat of formation + Delta-G solvation = 62.304466 kcal Electronic energy + Delta-G solvation = -19964.401265 eV Core-core repulsion = 16735.485694 eV Total energy + Delta-G solvation = -3228.915571 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.29703 -39.82096 -37.38267 -34.70683 -34.19604 -32.93660 -32.56360 -29.76746 -29.50707 -28.52992 -25.48280 -23.85416 -22.09556 -21.49674 -21.09608 -20.42502 -19.32213 -18.22790 -17.37716 -16.94790 -16.28352 -15.36899 -15.20666 -14.86717 -14.56836 -14.36342 -13.95672 -13.84808 -13.58832 -13.00989 -12.66124 -12.26746 -12.14369 -11.72586 -11.37130 -11.16734 -11.07651 -10.81783 -10.72496 -10.46861 -10.30028 -10.06467 -9.51644 -9.45609 -9.17328 -8.88478 -8.17635 -7.56035 -6.85666 -6.63118 -4.35100 0.43547 2.18477 2.68060 2.68625 2.88475 3.07732 3.08930 3.10924 3.18138 3.72920 3.84581 3.97432 4.30004 4.64280 4.69261 4.78540 4.97810 5.09604 5.38915 5.42830 5.64547 6.04876 6.17674 6.18458 6.30578 6.45095 6.74708 6.91731 6.92898 7.05904 7.20004 7.28990 7.62101 7.62899 7.73904 7.86678 8.05135 8.25101 8.30538 8.61008 8.74075 8.91310 8.99045 10.27863 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.055392 B = 0.002626 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.362806 B =10658.530724 C =10852.554502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.460 4.460 8 H 0.076 0.924 9 C 0.100 3.900 10 C -0.206 4.206 11 C -0.083 4.083 12 C 0.002 3.998 13 N -0.646 5.646 14 C 0.531 3.469 15 O -0.538 6.538 16 C -0.218 4.218 17 C 0.011 3.989 18 C -0.020 4.020 19 C 0.027 3.973 20 N -0.498 5.498 21 C 0.199 3.801 22 N -0.559 5.559 23 H 0.423 0.577 24 C -0.121 4.121 25 C -0.142 4.142 26 H 0.278 0.722 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.394 0.606 30 H 0.112 0.888 31 H 0.156 0.844 32 H 0.181 0.819 33 H 0.211 0.789 34 H 0.090 0.910 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.480 -15.768 -0.259 17.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.491 4.491 8 H 0.094 0.906 9 C 0.098 3.902 10 C -0.226 4.226 11 C -0.103 4.103 12 C -0.091 4.091 13 N -0.287 5.287 14 C 0.322 3.678 15 O -0.418 6.418 16 C -0.240 4.240 17 C -0.010 4.010 18 C -0.133 4.133 19 C -0.125 4.125 20 N -0.216 5.216 21 C -0.083 4.083 22 N -0.162 5.162 23 H 0.262 0.738 24 C -0.141 4.141 25 C -0.162 4.162 26 H 0.089 0.911 27 H 0.115 0.885 28 H 0.126 0.874 29 H 0.228 0.772 30 H 0.130 0.870 31 H 0.173 0.827 32 H 0.198 0.802 33 H 0.227 0.773 34 H 0.108 0.892 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.377 -16.031 0.903 17.670 hybrid contribution -0.102 1.484 -1.378 2.028 sum -7.479 -14.547 -0.476 16.364 Atomic orbital electron populations 1.69753 1.07294 1.28833 1.38016 1.25890 0.94957 1.01193 0.92553 0.86237 0.79789 0.80062 0.79787 1.19053 1.20438 1.19064 1.19470 0.94731 0.90231 1.44664 0.90610 1.17729 0.92281 0.92013 0.88218 1.20817 1.01271 0.94984 1.05552 1.20415 0.92717 0.97872 0.99328 1.17262 0.94313 0.85913 1.11621 1.42912 1.48403 1.21331 1.16075 1.16910 0.83666 0.84553 0.82681 1.90831 1.39622 1.71480 1.39894 1.21882 1.04327 0.98253 0.99578 1.20711 0.93638 0.88731 0.97894 1.19290 1.00888 0.99994 0.93164 1.23124 0.99487 0.91397 0.98540 1.70096 1.11980 1.26216 1.13351 1.25085 1.01596 0.89345 0.92282 1.43476 1.33493 1.21396 1.17815 0.73786 1.20321 0.98307 0.93216 1.02267 1.21189 0.97320 0.95559 1.02146 0.91077 0.88548 0.87382 0.77227 0.86992 0.82698 0.80170 0.77273 0.89163 0.85042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.12 10.60 55.55 0.59 -20.53 16 2 C 0.07 1.75 5.42 -17.33 -0.09 1.66 16 3 Si 0.92 18.99 29.56 -169.99 -5.03 13.97 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.46 -12.28 9.02 -37.86 -0.34 -12.62 16 8 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 9 C 0.10 2.69 5.55 -106.80 -0.59 2.10 16 10 C -0.21 -5.24 9.74 -39.26 -0.38 -5.63 16 11 C -0.08 -2.00 8.61 -39.78 -0.34 -2.35 16 12 C 0.00 0.03 6.30 -83.62 -0.53 -0.49 16 13 N -0.65 -11.17 5.29 -12.38 -0.07 -11.24 16 14 C 0.53 9.10 7.38 -15.02 -0.11 8.99 16 15 O -0.54 -11.44 13.52 5.11 0.07 -11.37 16 16 C -0.22 -2.60 9.40 -39.29 -0.37 -2.97 16 17 C 0.01 0.13 9.43 -39.18 -0.37 -0.24 16 18 C -0.02 -0.19 6.79 -83.70 -0.57 -0.76 16 19 C 0.03 0.28 11.92 -16.96 -0.20 0.07 16 20 N -0.50 -5.27 11.19 -14.05 -0.16 -5.43 16 21 C 0.20 1.46 12.99 -90.44 -1.17 0.29 16 22 N -0.56 -3.98 6.02 -11.76 -0.07 -4.05 16 23 H 0.42 1.81 8.01 -40.82 -0.33 1.48 16 24 C -0.12 -2.75 9.90 -39.78 -0.39 -3.14 16 25 C -0.14 -3.65 8.61 -39.26 -0.34 -3.99 16 26 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 27 H 0.10 2.32 8.06 -52.48 -0.42 1.90 16 28 H 0.11 2.56 6.22 -52.49 -0.33 2.23 16 29 H 0.39 5.21 8.77 -40.82 -0.36 4.85 16 30 H 0.11 0.93 7.04 -52.49 -0.37 0.56 16 31 H 0.16 1.83 7.46 -52.49 -0.39 1.43 16 32 H 0.18 1.46 8.06 -52.49 -0.42 1.03 16 33 H 0.21 0.64 8.06 -52.49 -0.42 0.21 16 34 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 35 H 0.13 3.48 6.13 -52.49 -0.32 3.16 16 LS Contribution 310.57 15.07 4.68 4.68 Total: -1.00 -33.23 310.57 -9.12 -42.35 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -3.33 Total: 10.71 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -5.81 Total: -19.10 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.30 Total: -41.25 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.07 Total: -11.37 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.23 -9.12 -42.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492915670.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.655 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds