Wall clock time and date at job start Tue Mar 31 2020 05:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42104 * 108.57852 * 2 1 4 4 O 1.42102 * 108.57516 * 228.97802 * 2 1 3 5 5 C 1.81400 * 101.92294 * 114.48553 * 2 1 3 6 6 C 1.50704 * 109.46758 * 179.97438 * 5 2 1 7 7 C 1.38236 * 119.99414 * 90.00767 * 6 5 2 8 8 C 1.38237 * 119.99509 * 179.97438 * 7 6 5 9 9 C 1.38235 * 120.00177 * 0.02562 * 8 7 6 10 10 C 1.50699 * 120.00062 * 179.97438 * 9 8 7 11 11 N 1.46906 * 109.46990 * 89.99891 * 10 9 8 12 12 C 1.46902 * 110.99573 * 180.02562 * 11 10 9 13 13 C 1.50707 * 109.46656 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00358 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99768 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99947 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 120.00099 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.46562 * 90.00195 * 17 15 13 19 19 H 1.48493 * 109.47101 * 210.00054 * 17 15 13 20 20 H 1.48494 * 109.47129 * 330.00479 * 17 15 13 21 21 C 1.38237 * 119.99882 * 0.25351 * 9 8 7 22 22 C 1.38230 * 119.99851 * 359.49431 * 21 9 8 23 23 H 1.09004 * 109.47350 * 305.51001 * 1 2 3 24 24 H 1.09002 * 109.47311 * 65.51259 * 1 2 3 25 25 H 1.08999 * 109.47008 * 185.51643 * 1 2 3 26 26 H 1.09002 * 109.46590 * 60.00275 * 5 2 1 27 27 H 1.09000 * 109.47370 * 300.00126 * 5 2 1 28 28 H 1.07998 * 120.00053 * 359.97438 * 7 6 5 29 29 H 1.07998 * 119.99878 * 179.97438 * 8 7 6 30 30 H 1.09002 * 109.47064 * 330.00168 * 10 9 8 31 31 H 1.09000 * 109.47099 * 209.99894 * 10 9 8 32 32 H 1.00896 * 111.00309 * 56.04484 * 11 10 9 33 33 H 1.08990 * 109.47358 * 299.99539 * 12 11 10 34 34 H 1.09004 * 109.47457 * 60.00221 * 12 11 10 35 35 H 0.97002 * 120.00093 * 180.02562 * 16 15 13 36 36 H 1.08003 * 119.99515 * 179.73041 * 21 9 8 37 37 H 1.08003 * 119.99895 * 180.25476 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1888 -0.7356 1.6152 6 6 3.6828 -0.8182 1.7951 7 6 4.3683 0.2335 2.3738 8 6 5.7387 0.1575 2.5392 9 6 6.4234 -0.9698 2.1255 10 6 7.9174 -1.0523 2.3053 11 7 8.2209 -1.6482 3.6133 12 6 9.6716 -1.7441 3.8241 13 6 9.9435 -2.3581 5.1733 14 1 9.1211 -2.6483 5.8102 15 6 11.2424 -2.5502 5.5941 16 7 11.4797 -3.0863 6.7712 17 14 12.6650 -2.0488 4.4921 18 1 13.0424 -0.6417 4.7806 19 1 13.8275 -2.9359 4.7502 20 1 12.2560 -2.1699 3.0698 21 6 5.7385 -2.0190 1.5415 22 6 4.3676 -1.9453 1.3808 23 1 -0.3634 0.5969 0.8365 24 1 -0.3634 0.4260 -0.9352 25 1 -0.3633 -1.0229 0.0988 26 1 1.7611 -1.7369 1.6664 27 1 1.7611 -0.1171 2.4043 28 1 3.8334 1.1143 2.6966 29 1 6.2744 0.9793 2.9909 30 1 8.3453 -0.0512 2.2540 31 1 8.3447 -1.6711 1.5162 32 1 7.7806 -2.5508 3.7105 33 1 10.1114 -2.3674 3.0457 34 1 10.1114 -0.7476 3.7835 35 1 12.3935 -3.2211 7.0674 36 1 6.2742 -2.8980 1.2143 37 1 3.8319 -2.7667 0.9283 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000549407737.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:40 Heat of formation + Delta-G solvation = -44.780340 kcal Electronic energy + Delta-G solvation = -19156.396398 eV Core-core repulsion = 16025.988481 eV Total energy + Delta-G solvation = -3130.407917 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -39.51400 -37.25779 -36.29360 -35.77567 -33.34287 -32.08984 -30.92762 -30.13798 -28.90676 -26.60988 -23.72960 -22.75092 -21.14966 -20.77117 -19.19146 -17.07117 -16.97702 -16.73154 -16.45591 -15.78050 -15.49835 -15.14304 -14.53945 -14.17229 -13.83232 -13.74757 -13.65640 -13.43001 -13.16394 -12.95157 -12.76182 -12.38659 -12.34223 -12.26123 -11.88139 -11.68852 -11.48241 -11.30643 -10.98350 -10.88581 -10.62500 -10.47476 -9.88053 -9.32202 -8.89330 -8.61621 -8.56715 -7.51813 -6.07404 -4.05755 -0.45729 1.31164 1.44671 2.39785 3.28211 3.29789 3.35393 3.37501 3.61830 3.76177 4.17813 4.25885 4.34526 4.40625 4.62254 4.94602 4.96505 5.01726 5.10088 5.17876 5.24845 5.34971 5.50641 5.53386 5.81166 5.87899 6.08903 6.12452 6.39261 6.41805 6.69411 6.78942 6.98095 6.98884 7.56348 7.83850 8.27405 8.62043 9.00489 9.54107 11.05825 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.050356 B = 0.002766 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.907840 B =10120.917247 C =10194.729186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.661 4.661 2 S 2.414 3.586 3 O -0.934 6.934 4 O -0.934 6.934 5 C -0.556 4.556 6 C -0.107 4.107 7 C -0.102 4.102 8 C -0.097 4.097 9 C -0.055 4.055 10 C 0.088 3.912 11 N -0.674 5.674 12 C 0.163 3.837 13 C -0.517 4.517 14 H 0.079 0.921 15 C 0.068 3.932 16 N -0.900 5.900 17 Si 0.878 3.122 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.268 1.268 21 C -0.115 4.115 22 C -0.101 4.101 23 H 0.128 0.872 24 H 0.128 0.872 25 H 0.127 0.873 26 H 0.139 0.861 27 H 0.139 0.861 28 H 0.127 0.873 29 H 0.130 0.870 30 H 0.076 0.924 31 H 0.032 0.968 32 H 0.337 0.663 33 H -0.015 1.015 34 H 0.023 0.977 35 H 0.264 0.736 36 H 0.126 0.874 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.457 5.357 -13.586 27.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.810 4.810 2 S 2.597 3.403 3 O -0.931 6.931 4 O -0.931 6.931 5 C -0.683 4.683 6 C -0.109 4.109 7 C -0.121 4.121 8 C -0.116 4.116 9 C -0.056 4.056 10 C -0.041 4.041 11 N -0.305 5.305 12 C 0.036 3.964 13 C -0.555 4.555 14 H 0.097 0.903 15 C -0.134 4.134 16 N -0.539 5.539 17 Si 0.706 3.294 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.192 1.192 21 C -0.133 4.133 22 C -0.120 4.120 23 H 0.146 0.854 24 H 0.147 0.853 25 H 0.146 0.854 26 H 0.157 0.843 27 H 0.158 0.842 28 H 0.145 0.855 29 H 0.148 0.852 30 H 0.095 0.905 31 H 0.050 0.950 32 H 0.154 0.846 33 H 0.003 0.997 34 H 0.041 0.959 35 H 0.074 0.926 36 H 0.144 0.856 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -22.814 6.204 -13.794 27.373 hybrid contribution 0.375 -0.826 -0.335 0.967 sum -22.439 5.378 -14.129 27.057 Atomic orbital electron populations 1.30337 1.27425 1.11477 1.11735 1.08267 0.78029 0.76103 0.77931 1.93603 1.78789 1.34366 1.86312 1.93601 1.78808 1.66945 1.53773 1.29243 1.01899 1.14307 1.22890 1.18758 0.90890 0.96647 1.04602 1.21083 0.94788 0.97826 0.98362 1.21082 0.93597 0.98299 0.98608 1.20129 0.96403 0.93658 0.95370 1.20985 0.89931 1.00907 0.92325 1.60546 1.13677 1.29573 1.26673 1.20036 0.83524 0.95994 0.96877 1.21041 0.93728 1.40170 1.00553 0.90290 1.24909 0.98686 0.94762 0.94993 1.69897 1.20521 1.44348 1.19114 0.86811 0.82253 0.78832 0.81543 1.20102 1.21191 1.19232 1.21092 0.93921 0.98708 0.99618 1.21018 0.94638 0.97081 0.99259 0.85361 0.85322 0.85380 0.84287 0.84242 0.85486 0.85176 0.90539 0.95008 0.84557 0.99689 0.95857 0.92611 0.85623 0.85562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.08 10.62 101.05 1.07 -1.01 16 2 S 2.41 18.03 5.34 -107.50 -0.57 17.46 16 3 O -0.93 -10.68 18.10 -57.83 -1.05 -11.73 16 4 O -0.93 -10.66 18.10 -57.83 -1.05 -11.70 16 5 C -0.56 -3.56 5.93 36.01 0.21 -3.35 16 6 C -0.11 -1.20 5.14 -104.62 -0.54 -1.74 16 7 C -0.10 -1.24 9.70 -39.58 -0.38 -1.63 16 8 C -0.10 -1.36 9.70 -39.58 -0.38 -1.75 16 9 C -0.05 -0.82 5.39 -104.62 -0.56 -1.38 16 10 C 0.09 1.48 5.81 -4.97 -0.03 1.45 16 11 N -0.67 -13.98 6.48 -116.33 -0.75 -14.73 16 12 C 0.16 3.97 4.51 -4.97 -0.02 3.94 16 13 C -0.52 -14.84 9.87 -34.44 -0.34 -15.18 16 14 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 17 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 21 C -0.11 -1.56 9.70 -39.58 -0.38 -1.94 16 22 C -0.10 -1.21 9.70 -39.59 -0.38 -1.60 16 23 H 0.13 0.16 8.14 -51.92 -0.42 -0.26 16 24 H 0.13 0.37 8.14 -51.92 -0.42 -0.05 16 25 H 0.13 0.16 8.14 -51.92 -0.42 -0.26 16 26 H 0.14 0.51 8.09 -51.92 -0.42 0.09 16 27 H 0.14 0.52 8.09 -51.92 -0.42 0.10 16 28 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 29 H 0.13 1.72 8.06 -52.49 -0.42 1.29 16 30 H 0.08 1.26 8.09 -51.93 -0.42 0.84 16 31 H 0.03 0.52 8.08 -51.93 -0.42 0.10 16 32 H 0.34 6.82 8.72 -39.29 -0.34 6.48 16 33 H -0.01 -0.35 7.20 -51.93 -0.37 -0.73 16 34 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.13 1.54 8.06 -52.48 -0.42 1.11 16 37 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 LS Contribution 330.60 15.07 4.98 4.98 Total: -1.00 -37.48 330.60 -9.51 -46.99 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -5.34 Total: 1.03 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -1.84 Total: -22.27 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 0.02 Total: -41.69 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -2.09 Total: -23.43 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Atomic # 16 Polarization: 18.03 SS G_CDS: -0.57 Total: 17.46 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -37.48 -9.51 -46.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000549407737.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.207 kcal (2) G-P(sol) polarization free energy of solvation -37.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds