Wall clock time and date at job start Tue Mar 31 2020 05:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42104 * 108.58200 * 2 1 4 4 O 1.42105 * 108.57879 * 228.97308 * 2 1 3 5 5 C 1.81401 * 101.92408 * 114.48475 * 2 1 3 6 6 C 1.50696 * 109.47379 * 174.86587 * 5 2 1 7 7 C 1.38261 * 119.99671 * 84.40749 * 6 5 2 8 8 C 1.38217 * 120.00027 * 180.25238 * 7 6 5 9 9 C 1.38254 * 119.99711 * 359.54149 * 8 7 6 10 10 C 1.38210 * 120.00537 * 0.41574 * 9 8 7 11 11 C 1.38208 * 120.00452 * 264.38772 * 6 5 2 12 12 C 1.50698 * 120.00056 * 0.02562 * 11 6 5 13 13 N 1.46901 * 109.46746 * 282.16741 * 12 11 6 14 14 C 1.46903 * 111.00054 * 184.69981 * 13 12 11 15 15 C 1.50695 * 109.47455 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99846 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00140 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00098 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00033 * 179.97438 * 17 15 14 20 20 H 1.48510 * 109.46815 * 90.00489 * 19 17 15 21 21 H 1.48496 * 109.47427 * 210.00282 * 19 17 15 22 22 H 1.48500 * 109.47145 * 330.00816 * 19 17 15 23 23 H 1.09010 * 109.47026 * 305.51454 * 1 2 3 24 24 H 1.09000 * 109.47190 * 65.51324 * 1 2 3 25 25 H 1.08993 * 109.47098 * 185.51568 * 1 2 3 26 26 H 1.09007 * 109.46659 * 54.87124 * 5 2 1 27 27 H 1.08995 * 109.47262 * 294.87032 * 5 2 1 28 28 H 1.08000 * 120.00122 * 359.97438 * 7 6 5 29 29 H 1.07995 * 120.00116 * 179.72428 * 8 7 6 30 30 H 1.08006 * 119.99913 * 180.20775 * 9 8 7 31 31 H 1.07996 * 120.00680 * 179.79000 * 10 9 8 32 32 H 1.09003 * 109.47408 * 42.16345 * 12 11 6 33 33 H 1.08998 * 109.47631 * 162.16936 * 12 11 6 34 34 H 1.00897 * 111.00250 * 308.64997 * 13 12 11 35 35 H 1.09000 * 109.47037 * 300.00492 * 14 13 12 36 36 H 1.09005 * 109.46859 * 59.99774 * 14 13 12 37 37 H 0.97006 * 120.00376 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2667 -0.8842 -1.0162 5 6 2.1888 -0.7356 1.6153 6 6 3.6771 -0.9338 1.7438 7 6 4.4793 0.1093 2.1680 8 6 5.8450 -0.0709 2.2809 9 6 6.4077 -1.2971 1.9788 10 6 5.6058 -2.3402 1.5557 11 6 4.2402 -2.1585 1.4382 12 6 3.3658 -3.2954 0.9757 13 7 2.6825 -3.8893 2.1326 14 6 1.9068 -5.0721 1.7357 15 6 1.2221 -5.6531 2.9458 16 1 1.3499 -5.1899 3.9130 17 6 0.4315 -6.7755 2.8181 18 7 0.2754 -7.3393 1.6403 19 14 -0.4167 -7.4961 4.3183 20 1 -1.7563 -6.8747 4.4758 21 1 -0.5690 -8.9629 4.1441 22 1 0.4007 -7.2235 5.5278 23 1 -0.3633 0.5970 0.8366 24 1 -0.3633 0.4259 -0.9352 25 1 -0.3633 -1.0228 0.0988 26 1 1.6852 -1.6985 1.7016 27 1 1.8410 -0.0715 2.4064 28 1 4.0393 1.0663 2.4067 29 1 6.4721 0.7452 2.6080 30 1 7.4745 -1.4389 2.0703 31 1 6.0457 -3.2970 1.3165 32 1 2.6252 -2.9203 0.2695 33 1 3.9811 -4.0523 0.4892 34 1 3.3399 -4.1167 2.8634 35 1 1.1584 -4.7847 0.9972 36 1 2.5755 -5.8171 1.3043 37 1 -0.2804 -8.1292 1.5505 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563882176.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:44 Heat of formation + Delta-G solvation = -47.627618 kcal Electronic energy + Delta-G solvation = -20171.642856 eV Core-core repulsion = 17041.111472 eV Total energy + Delta-G solvation = -3130.531384 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.54243 -36.91823 -35.94173 -35.43263 -33.11032 -32.52171 -30.88494 -29.68733 -27.60586 -26.73938 -24.29126 -22.04177 -21.53283 -20.60704 -18.81587 -16.92800 -16.60205 -16.37605 -16.22897 -15.64833 -15.39548 -14.96200 -14.60255 -14.08217 -13.62918 -13.38746 -13.22607 -13.11887 -13.05451 -12.54731 -12.45147 -12.32890 -11.99840 -11.93485 -11.72140 -11.37646 -11.13129 -11.04445 -10.91298 -10.74677 -10.66583 -10.58251 -9.98824 -9.27330 -8.74927 -8.55242 -8.49540 -7.42358 -6.08937 -4.11667 -0.06781 1.44054 1.46157 2.76344 3.27448 3.33890 3.37366 3.61506 3.84117 4.03898 4.37999 4.53918 4.73422 4.76380 4.94569 5.02452 5.05356 5.19380 5.26926 5.41868 5.49176 5.60462 5.62956 5.75832 5.93884 5.99863 6.18017 6.31929 6.46795 6.54693 6.74319 7.04118 7.16494 7.35041 7.70526 8.04584 8.28161 8.50632 8.97601 9.53606 11.01908 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.016491 B = 0.005022 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.516255 B = 5574.370933 C = 6616.251045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.408 3.592 3 O -0.946 6.946 4 O -0.932 6.932 5 C -0.565 4.565 6 C -0.067 4.067 7 C -0.110 4.110 8 C -0.127 4.127 9 C -0.112 4.112 10 C -0.117 4.117 11 C -0.049 4.049 12 C 0.080 3.920 13 N -0.685 5.685 14 C 0.191 3.809 15 C -0.516 4.516 16 H 0.063 0.937 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.899 3.101 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.127 0.873 24 H 0.126 0.874 25 H 0.135 0.865 26 H 0.167 0.833 27 H 0.139 0.861 28 H 0.128 0.872 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.125 0.875 32 H 0.084 0.916 33 H 0.036 0.964 34 H 0.332 0.668 35 H 0.030 0.970 36 H -0.010 1.010 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.600 15.297 -0.602 16.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.592 3.408 3 O -0.943 6.943 4 O -0.929 6.929 5 C -0.693 4.693 6 C -0.070 4.070 7 C -0.129 4.129 8 C -0.145 4.145 9 C -0.131 4.131 10 C -0.135 4.135 11 C -0.051 4.051 12 C -0.049 4.049 13 N -0.315 5.315 14 C 0.064 3.936 15 C -0.555 4.555 16 H 0.081 0.919 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.727 3.273 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.199 1.199 23 H 0.146 0.854 24 H 0.145 0.855 25 H 0.153 0.847 26 H 0.185 0.815 27 H 0.157 0.843 28 H 0.146 0.854 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.102 0.898 33 H 0.054 0.946 34 H 0.149 0.851 35 H 0.048 0.952 36 H 0.007 0.993 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.475 15.861 -1.427 16.840 hybrid contribution -0.458 -1.449 1.247 1.966 sum 5.017 14.412 -0.180 15.262 Atomic orbital electron populations 1.30293 1.26921 1.12226 1.11372 1.08294 0.78375 0.75853 0.78284 1.93560 1.79215 1.34785 1.86728 1.93600 1.78813 1.66488 1.53990 1.29355 1.01955 1.16281 1.21735 1.18664 0.91321 0.94316 1.02648 1.21136 0.94062 0.98426 0.99253 1.21055 0.94726 0.97513 1.01224 1.21169 0.99745 0.93240 0.98912 1.21126 0.92997 0.99319 1.00074 1.19972 0.94040 0.94426 0.96650 1.21094 0.95813 0.93279 0.94763 1.60791 1.27768 1.34489 1.08494 1.19623 0.92253 0.84898 0.96782 1.21158 1.28938 1.10712 0.94684 0.91920 1.24987 0.96677 0.96748 0.96098 1.69961 1.39298 1.21522 1.22738 0.86487 0.79844 0.78104 0.82865 1.20632 1.21276 1.19866 0.85410 0.85496 0.84659 0.81539 0.84305 0.85434 0.85910 0.85988 0.85720 0.89792 0.94624 0.85110 0.95234 0.99251 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -5.80 10.62 101.05 1.07 -4.73 16 2 S 2.41 29.68 5.35 -107.50 -0.58 29.11 16 3 O -0.95 -13.69 18.10 -57.83 -1.05 -14.74 16 4 O -0.93 -15.10 16.89 -57.83 -0.98 -16.07 16 5 C -0.57 -7.00 5.34 36.00 0.19 -6.81 16 6 C -0.07 -0.98 5.12 -104.63 -0.54 -1.52 16 7 C -0.11 -1.42 9.72 -39.58 -0.38 -1.81 16 8 C -0.13 -1.50 10.05 -39.58 -0.40 -1.90 16 9 C -0.11 -1.35 10.05 -39.59 -0.40 -1.75 16 10 C -0.12 -1.63 9.67 -39.58 -0.38 -2.01 16 11 C -0.05 -0.78 5.34 -104.62 -0.56 -1.34 16 12 C 0.08 1.43 4.94 -4.98 -0.02 1.41 16 13 N -0.68 -13.94 5.74 -116.34 -0.67 -14.61 16 14 C 0.19 4.81 5.43 -4.98 -0.03 4.78 16 15 C -0.52 -14.11 9.32 -34.44 -0.32 -14.43 16 16 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 17 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -26.17 13.29 55.43 0.74 -25.44 16 19 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 23 H 0.13 0.82 8.14 -51.92 -0.42 0.39 16 24 H 0.13 0.97 8.14 -51.92 -0.42 0.55 16 25 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.17 2.28 6.01 -51.92 -0.31 1.97 16 27 H 0.14 1.25 8.12 -51.93 -0.42 0.83 16 28 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 29 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 31 H 0.12 1.58 8.02 -52.49 -0.42 1.16 16 32 H 0.08 1.53 6.10 -51.93 -0.32 1.21 16 33 H 0.04 0.65 7.97 -51.93 -0.41 0.23 16 34 H 0.33 6.63 8.65 -39.29 -0.34 6.29 16 35 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 36 H -0.01 -0.28 8.14 -51.93 -0.42 -0.70 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 327.17 15.07 4.93 4.93 Total: -1.00 -34.46 327.17 -9.64 -44.10 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -5.15 Total: 5.22 kcal Atomic # 6 Polarization: -26.76 SS G_CDS: -1.86 Total: -28.63 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.07 Total: -40.05 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -2.02 Total: -30.81 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 29.68 SS G_CDS: -0.58 Total: 29.11 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.46 -9.64 -44.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563882176.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.530 kcal (2) G-P(sol) polarization free energy of solvation -34.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds