Wall clock time and date at job start Tue Mar 31 2020 05:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42104 * 108.58200 * 2 1 4 4 O 1.42105 * 108.57879 * 228.97308 * 2 1 3 5 5 C 1.81401 * 101.92408 * 114.48475 * 2 1 3 6 6 C 1.50696 * 109.47379 * 174.86587 * 5 2 1 7 7 C 1.38261 * 119.99671 * 84.40749 * 6 5 2 8 8 C 1.38217 * 120.00027 * 180.25238 * 7 6 5 9 9 C 1.38254 * 119.99711 * 359.54149 * 8 7 6 10 10 C 1.38210 * 120.00537 * 0.41574 * 9 8 7 11 11 C 1.38208 * 120.00452 * 264.38772 * 6 5 2 12 12 C 1.50698 * 120.00056 * 0.02562 * 11 6 5 13 13 N 1.46901 * 109.46746 * 282.16741 * 12 11 6 14 14 C 1.46903 * 111.00054 * 184.69981 * 13 12 11 15 15 C 1.50695 * 109.47455 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99846 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00140 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00098 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00033 * 179.97438 * 17 15 14 20 20 H 1.48510 * 109.46815 * 90.00489 * 19 17 15 21 21 H 1.48496 * 109.47427 * 210.00282 * 19 17 15 22 22 H 1.48500 * 109.47145 * 330.00816 * 19 17 15 23 23 H 1.09010 * 109.47026 * 305.51454 * 1 2 3 24 24 H 1.09000 * 109.47190 * 65.51324 * 1 2 3 25 25 H 1.08993 * 109.47098 * 185.51568 * 1 2 3 26 26 H 1.09007 * 109.46659 * 54.87124 * 5 2 1 27 27 H 1.08995 * 109.47262 * 294.87032 * 5 2 1 28 28 H 1.08000 * 120.00122 * 359.97438 * 7 6 5 29 29 H 1.07995 * 120.00116 * 179.72428 * 8 7 6 30 30 H 1.08006 * 119.99913 * 180.20775 * 9 8 7 31 31 H 1.07996 * 120.00680 * 179.79000 * 10 9 8 32 32 H 1.09003 * 109.47408 * 42.16345 * 12 11 6 33 33 H 1.08998 * 109.47631 * 162.16936 * 12 11 6 34 34 H 1.00897 * 111.00250 * 308.64997 * 13 12 11 35 35 H 1.09000 * 109.47037 * 300.00492 * 14 13 12 36 36 H 1.09005 * 109.46859 * 59.99774 * 14 13 12 37 37 H 0.97006 * 120.00376 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2667 -0.8842 -1.0162 5 6 2.1888 -0.7356 1.6153 6 6 3.6771 -0.9338 1.7438 7 6 4.4793 0.1093 2.1680 8 6 5.8450 -0.0709 2.2809 9 6 6.4077 -1.2971 1.9788 10 6 5.6058 -2.3402 1.5557 11 6 4.2402 -2.1585 1.4382 12 6 3.3658 -3.2954 0.9757 13 7 2.6825 -3.8893 2.1326 14 6 1.9068 -5.0721 1.7357 15 6 1.2221 -5.6531 2.9458 16 1 1.3499 -5.1899 3.9130 17 6 0.4315 -6.7755 2.8181 18 7 0.2754 -7.3393 1.6403 19 14 -0.4167 -7.4961 4.3183 20 1 -1.7563 -6.8747 4.4758 21 1 -0.5690 -8.9629 4.1441 22 1 0.4007 -7.2235 5.5278 23 1 -0.3633 0.5970 0.8366 24 1 -0.3633 0.4259 -0.9352 25 1 -0.3633 -1.0228 0.0988 26 1 1.6852 -1.6985 1.7016 27 1 1.8410 -0.0715 2.4064 28 1 4.0393 1.0663 2.4067 29 1 6.4721 0.7452 2.6080 30 1 7.4745 -1.4389 2.0703 31 1 6.0457 -3.2970 1.3165 32 1 2.6252 -2.9203 0.2695 33 1 3.9811 -4.0523 0.4892 34 1 3.3399 -4.1167 2.8634 35 1 1.1584 -4.7847 0.9972 36 1 2.5755 -5.8171 1.3043 37 1 -0.2804 -8.1292 1.5505 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563882176.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:44 Heat of formation + Delta-G solvation = -73.002662 kcal Electronic energy + Delta-G solvation = -20172.743201 eV Core-core repulsion = 17041.111472 eV Total energy + Delta-G solvation = -3131.631728 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.60471 -37.99459 -37.07070 -37.01696 -34.76901 -33.84230 -32.25081 -30.46367 -29.06687 -28.08302 -25.86954 -23.48316 -23.05907 -21.75696 -19.81514 -18.65388 -17.74247 -17.55655 -17.29356 -16.86138 -16.58117 -16.51753 -15.91405 -15.53157 -15.21493 -14.62586 -14.30786 -13.98065 -13.94750 -13.87798 -13.66288 -13.52363 -13.29361 -13.22192 -13.07623 -12.96531 -12.68241 -12.61729 -12.15678 -12.14557 -12.02763 -11.74401 -11.61835 -11.29515 -10.65784 -9.79754 -9.56443 -9.18251 -8.21704 -6.33128 -1.01033 0.40108 0.44538 1.42800 1.43802 1.55235 1.85046 2.40288 2.65930 2.82591 3.10063 3.11955 3.52381 3.64150 3.89834 3.93042 4.08361 4.10743 4.22387 4.32189 4.38310 4.61252 4.67752 4.70083 4.78123 4.95249 5.07214 5.10754 5.16424 5.24997 5.48590 5.56056 5.59273 5.66721 5.99723 6.05867 6.38517 6.65210 6.87281 7.37871 8.89763 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.016491 B = 0.005022 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.516255 B = 5574.370933 C = 6616.251045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.643 4.643 2 S 2.411 3.589 3 O -0.970 6.970 4 O -0.982 6.982 5 C -0.566 4.566 6 C -0.083 4.083 7 C -0.120 4.120 8 C -0.122 4.122 9 C -0.112 4.112 10 C -0.129 4.129 11 C -0.079 4.079 12 C 0.084 3.916 13 N -0.671 5.671 14 C 0.204 3.796 15 C -0.532 4.532 16 H 0.067 0.933 17 C 0.003 3.997 18 N -0.934 5.934 19 Si 0.972 3.028 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.264 1.264 23 H 0.161 0.839 24 H 0.143 0.857 25 H 0.139 0.861 26 H 0.151 0.849 27 H 0.174 0.826 28 H 0.149 0.851 29 H 0.157 0.843 30 H 0.153 0.847 31 H 0.128 0.872 32 H 0.076 0.924 33 H 0.025 0.975 34 H 0.336 0.664 35 H 0.007 0.993 36 H -0.040 1.040 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.424 16.931 1.333 17.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.599 3.401 3 O -0.967 6.967 4 O -0.979 6.979 5 C -0.694 4.694 6 C -0.085 4.085 7 C -0.139 4.139 8 C -0.140 4.140 9 C -0.130 4.130 10 C -0.148 4.148 11 C -0.080 4.080 12 C -0.045 4.045 13 N -0.301 5.301 14 C 0.076 3.924 15 C -0.571 4.571 16 H 0.085 0.915 17 C -0.196 4.196 18 N -0.574 5.574 19 Si 0.797 3.203 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.188 1.188 23 H 0.179 0.821 24 H 0.161 0.839 25 H 0.157 0.843 26 H 0.169 0.831 27 H 0.192 0.808 28 H 0.167 0.833 29 H 0.174 0.826 30 H 0.170 0.830 31 H 0.146 0.854 32 H 0.095 0.905 33 H 0.043 0.957 34 H 0.153 0.847 35 H 0.025 0.975 36 H -0.022 1.022 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.353 17.516 0.508 18.323 hybrid contribution -0.382 -1.878 0.621 2.014 sum 4.971 15.638 1.129 16.448 Atomic orbital electron populations 1.30142 1.22076 1.13460 1.13838 1.07923 0.80082 0.74592 0.77505 1.93520 1.80886 1.35402 1.86916 1.93538 1.80964 1.67451 1.55958 1.29368 1.01013 1.16184 1.22855 1.18946 0.92599 0.94298 1.02680 1.21490 0.94719 0.98792 0.98928 1.21531 0.94735 0.98262 0.99476 1.21521 1.01095 0.92664 0.97757 1.21323 0.92644 1.00447 1.00390 1.19838 0.94560 0.94275 0.99361 1.21011 0.95798 0.93929 0.93721 1.60654 1.28186 1.31852 1.09424 1.19297 0.91648 0.85723 0.95686 1.21497 1.29198 1.11134 0.95236 0.91494 1.25929 0.97305 0.97104 0.99229 1.70096 1.40122 1.22069 1.25099 0.85340 0.78850 0.77113 0.79012 1.19642 1.21017 1.18841 0.82112 0.83883 0.84254 0.83145 0.80831 0.83317 0.82556 0.82963 0.85371 0.90549 0.95653 0.84739 0.97505 1.02234 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -9.93 10.62 113.37 1.20 -8.72 16 2 S 2.41 58.53 5.35 -56.49 -0.30 58.23 16 3 O -0.97 -27.26 18.10 -127.37 -2.31 -29.56 16 4 O -0.98 -33.14 16.89 -127.37 -2.15 -35.29 16 5 C -0.57 -13.63 5.34 71.23 0.38 -13.25 16 6 C -0.08 -2.37 5.12 -19.87 -0.10 -2.48 16 7 C -0.12 -2.88 9.72 22.27 0.22 -2.66 16 8 C -0.12 -2.55 10.05 22.27 0.22 -2.32 16 9 C -0.11 -2.47 10.05 22.27 0.22 -2.24 16 10 C -0.13 -3.59 9.67 22.27 0.22 -3.38 16 11 C -0.08 -2.53 5.34 -19.87 -0.11 -2.64 16 12 C 0.08 3.19 4.94 85.56 0.42 3.62 16 13 N -0.67 -28.27 5.74 -521.98 -3.00 -31.27 16 14 C 0.20 10.74 5.43 85.55 0.46 11.20 16 15 C -0.53 -29.50 9.32 25.60 0.24 -29.26 16 16 H 0.07 3.58 7.81 -2.91 -0.02 3.55 16 17 C 0.00 0.15 5.46 84.66 0.46 0.61 16 18 N -0.93 -55.59 13.29 21.45 0.28 -55.31 16 19 Si 0.97 43.19 29.54 68.60 2.03 45.22 16 20 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 23 H 0.16 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.14 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.14 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.15 4.17 6.01 -2.39 -0.01 4.15 16 27 H 0.17 2.74 8.12 -2.39 -0.02 2.72 16 28 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 29 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 30 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 31 H 0.13 3.30 8.02 -2.91 -0.02 3.28 16 32 H 0.08 2.97 6.10 -2.39 -0.01 2.96 16 33 H 0.03 0.99 7.97 -2.39 -0.02 0.97 16 34 H 0.34 13.73 8.65 -89.70 -0.78 12.96 16 35 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 36 H -0.04 -2.30 8.14 -2.38 -0.02 -2.32 16 37 H 0.26 14.81 8.31 -92.70 -0.77 14.04 16 Total: -1.00 -75.97 327.17 -1.31 -77.28 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: 0.29 Total: 22.22 kcal Atomic # 6 Polarization: -55.37 SS G_CDS: 3.84 Total: -51.52 kcal Atomic # 7 Polarization: -83.86 SS G_CDS: -2.71 Total: -86.57 kcal Atomic # 8 Polarization: -60.40 SS G_CDS: -4.46 Total: -64.86 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: 58.53 SS G_CDS: -0.30 Total: 58.23 kcal Total: -75.97 -1.31 -77.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563882176.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.276 kcal (2) G-P(sol) polarization free energy of solvation -75.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds