Wall clock time and date at job start Tue Mar 31 2020 05:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00088 * 2 1 4 4 H 1.48494 * 109.47587 * 270.00740 * 3 2 1 5 5 H 1.48508 * 109.47057 * 30.00295 * 3 2 1 6 6 H 1.48500 * 109.47271 * 150.00247 * 3 2 1 7 7 C 1.37873 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00035 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00497 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47385 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47339 * 180.02562 * 10 9 7 12 12 C 1.46901 * 111.00088 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47071 * 179.97438 * 12 11 10 14 14 H 1.09003 * 109.47141 * 59.99670 * 13 12 11 15 15 O 1.42901 * 109.47043 * 299.99900 * 13 12 11 16 16 C 1.53001 * 109.47374 * 179.97438 * 13 12 11 17 17 C 1.50693 * 109.47605 * 184.99790 * 16 13 12 18 18 C 1.38263 * 119.99161 * 89.99509 * 17 16 13 19 19 C 1.38227 * 120.02488 * 179.72424 * 18 17 16 20 20 C 1.38234 * 120.01430 * 0.28273 * 19 18 17 21 21 C 1.38334 * 119.98337 * 359.97438 * 20 19 18 22 22 Cl 1.73599 * 120.00894 * 179.97438 * 21 20 19 23 23 C 1.38190 * 119.99673 * 270.27943 * 17 16 13 24 24 H 0.97003 * 119.99980 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47182 * 59.99670 * 9 7 2 26 26 H 1.09001 * 109.46932 * 300.00372 * 9 7 2 27 27 H 1.08998 * 109.47402 * 60.00093 * 10 9 7 28 28 H 1.09001 * 109.47223 * 299.99990 * 10 9 7 29 29 H 1.00896 * 111.00575 * 56.04313 * 11 10 9 30 30 H 1.09003 * 109.47407 * 59.99647 * 12 11 10 31 31 H 1.08998 * 109.46765 * 299.99254 * 12 11 10 32 32 H 0.96708 * 114.00018 * 299.99654 * 15 13 12 33 33 H 1.08998 * 109.46818 * 64.99807 * 16 13 12 34 34 H 1.09001 * 109.47102 * 305.00256 * 16 13 12 35 35 H 1.08002 * 119.98986 * 0.02562 * 18 17 16 36 36 H 1.08002 * 119.98919 * 180.30242 * 19 18 17 37 37 H 1.07993 * 120.00600 * 179.97438 * 20 19 18 38 38 H 1.08002 * 120.00565 * 359.97438 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0023 11 7 5.4906 -2.6364 -0.0022 12 6 6.0170 -4.0079 -0.0040 13 6 7.5465 -3.9670 -0.0045 14 1 7.8963 -3.4446 0.8859 15 8 8.0042 -3.2796 -1.1707 16 6 8.0949 -5.3953 -0.0056 17 6 9.5963 -5.3572 0.1176 18 6 10.1879 -5.3778 1.3671 19 6 11.5652 -5.3485 1.4808 20 6 12.3517 -5.2928 0.3453 21 6 11.7601 -5.2668 -0.9048 22 17 12.7472 -5.1962 -2.3312 23 6 10.3813 -5.2957 -1.0180 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6803 0.8888 26 1 3.8745 -0.6799 -0.8911 27 1 3.6580 -3.1497 -0.8924 28 1 3.6586 -3.1509 0.8875 29 1 5.8522 -2.1109 0.7795 30 1 5.6675 -4.5301 -0.8946 31 1 5.6676 -4.5322 0.8854 32 1 7.7294 -3.6898 -2.0023 33 1 7.8193 -5.8895 -0.9372 34 1 7.6751 -5.9464 0.8360 35 1 9.5739 -5.4216 2.2545 36 1 12.0269 -5.3696 2.4569 37 1 13.4277 -5.2696 0.4343 38 1 9.9190 -5.2754 -1.9938 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564873818.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:17 Heat of formation + Delta-G solvation = -49.381598 kcal Electronic energy + Delta-G solvation = -18903.236350 eV Core-core repulsion = 15770.585202 eV Total energy + Delta-G solvation = -3132.651148 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.89849 -37.95698 -36.71572 -35.42705 -33.11764 -32.79220 -31.07824 -30.58193 -28.75911 -25.80142 -23.45744 -23.00182 -21.89751 -21.39862 -20.29491 -17.39653 -16.76199 -16.60572 -16.18790 -15.68970 -15.43235 -14.93174 -14.54398 -14.27789 -14.06305 -13.76378 -13.58539 -13.12495 -12.86946 -12.57090 -12.30419 -12.08704 -11.82858 -11.73819 -11.56945 -11.30097 -11.16008 -11.01520 -10.93916 -10.35046 -10.09083 -9.79234 -9.67792 -9.23202 -9.15493 -8.90849 -8.53412 -7.93995 -6.04428 -4.02966 0.84333 0.96397 1.84166 3.28925 3.34235 3.40904 3.46315 4.12949 4.38914 4.46972 4.49556 4.57616 4.72872 4.83539 4.91984 5.04616 5.12171 5.14626 5.30272 5.31618 5.44136 5.48955 5.64617 5.70065 5.90632 5.95330 6.00136 6.16435 6.21236 6.24822 6.48213 6.76049 7.11149 7.38221 7.56995 7.66906 7.77169 7.89872 8.52710 8.99184 9.58098 11.08826 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.031856 B = 0.002543 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.735417 B =11008.368298 C =11278.436689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.883 3.117 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.070 0.930 9 C -0.010 4.010 10 C 0.074 3.926 11 N -0.685 5.685 12 C 0.026 3.974 13 C 0.117 3.883 14 H 0.095 0.905 15 O -0.543 6.543 16 C -0.116 4.116 17 C -0.058 4.058 18 C -0.115 4.115 19 C -0.107 4.107 20 C -0.119 4.119 21 C -0.033 4.033 22 Cl -0.074 7.074 23 C -0.094 4.094 24 H 0.263 0.737 25 H 0.013 0.987 26 H 0.021 0.979 27 H 0.063 0.937 28 H 0.020 0.980 29 H 0.336 0.664 30 H 0.072 0.928 31 H 0.033 0.967 32 H 0.371 0.629 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.560 -14.346 0.985 29.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.711 3.289 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.088 0.912 9 C -0.048 4.048 10 C -0.054 4.054 11 N -0.316 5.316 12 C -0.104 4.104 13 C 0.057 3.943 14 H 0.113 0.887 15 O -0.347 6.347 16 C -0.154 4.154 17 C -0.059 4.059 18 C -0.133 4.133 19 C -0.125 4.125 20 C -0.137 4.137 21 C -0.059 4.059 22 Cl -0.045 7.045 23 C -0.113 4.113 24 H 0.073 0.927 25 H 0.031 0.969 26 H 0.040 0.960 27 H 0.082 0.918 28 H 0.039 0.961 29 H 0.153 0.847 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.217 0.783 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 25.788 -13.757 0.617 29.234 hybrid contribution -0.065 0.201 0.438 0.487 sum 25.723 -13.556 1.056 29.095 Atomic orbital electron populations 1.69914 1.06334 1.26943 1.51124 1.25010 0.94743 0.99262 0.94439 0.86724 0.80263 0.83329 0.78632 1.20201 1.21517 1.18954 1.21068 0.89398 0.94494 1.51090 0.91167 1.19539 0.96606 0.91814 0.96798 1.21970 0.84016 1.00126 0.99332 1.60483 1.09616 1.11636 1.49854 1.22652 0.94564 0.92149 1.01008 1.21882 0.92153 0.90301 0.90008 0.88694 1.86635 1.77503 1.55242 1.15291 1.21399 0.91013 0.98862 1.04118 1.19694 0.95481 0.98156 0.92536 1.21181 0.94952 0.99952 0.97252 1.21085 0.93635 0.99575 0.98210 1.21033 1.00560 1.01399 0.90741 1.20926 0.91785 1.05232 0.87969 1.98374 1.70202 1.96819 1.39146 1.20907 0.91149 0.99800 0.99452 0.92719 0.96870 0.96018 0.91841 0.96144 0.84680 0.90939 0.94932 0.78276 0.90125 0.89605 0.85440 0.85155 0.85183 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.10 13.96 55.43 0.77 -27.33 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 10 C 0.07 1.47 5.62 -3.83 -0.02 1.45 16 11 N -0.69 -11.28 6.37 -113.78 -0.72 -12.01 16 12 C 0.03 0.33 5.35 -3.82 -0.02 0.30 16 13 C 0.12 1.21 3.16 -26.73 -0.08 1.12 16 14 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 15 O -0.54 -6.51 12.69 -35.23 -0.45 -6.96 16 16 C -0.12 -0.91 5.03 -27.89 -0.14 -1.05 16 17 C -0.06 -0.51 4.97 -104.63 -0.52 -1.03 16 18 C -0.12 -0.93 9.70 -39.58 -0.38 -1.32 16 19 C -0.11 -0.81 10.05 -39.59 -0.40 -1.21 16 20 C -0.12 -0.99 9.83 -39.55 -0.39 -1.38 16 21 C -0.03 -0.31 6.32 -39.50 -0.25 -0.56 16 22 Cl -0.07 -0.68 28.96 -51.86 -1.50 -2.18 16 23 C -0.09 -0.88 9.17 -39.55 -0.36 -1.24 16 24 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 25 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 26 H 0.02 0.54 7.57 -51.93 -0.39 0.14 16 27 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.34 5.38 8.73 -39.29 -0.34 5.04 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.37 3.39 9.05 45.56 0.41 3.81 16 33 H 0.08 0.56 8.09 -51.93 -0.42 0.14 16 34 H 0.09 0.58 8.09 -51.93 -0.42 0.16 16 35 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 37 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 38 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 336.79 15.07 5.08 5.08 Total: -1.00 -32.45 336.79 -9.54 -42.00 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -4.93 Total: 2.70 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -3.12 Total: -18.77 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.05 Total: -39.33 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.45 Total: -6.96 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.45 -9.54 -42.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564873818.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.386 kcal (2) G-P(sol) polarization free energy of solvation -32.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds