Wall clock time and date at job start Tue Mar 31 2020 05:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00088 * 2 1 4 4 H 1.48494 * 109.47587 * 270.00740 * 3 2 1 5 5 H 1.48508 * 109.47057 * 30.00295 * 3 2 1 6 6 H 1.48500 * 109.47271 * 150.00247 * 3 2 1 7 7 C 1.37873 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00035 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00497 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47385 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47339 * 180.02562 * 10 9 7 12 12 C 1.46901 * 111.00088 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47071 * 179.97438 * 12 11 10 14 14 H 1.09003 * 109.47141 * 59.99670 * 13 12 11 15 15 O 1.42901 * 109.47043 * 299.99900 * 13 12 11 16 16 C 1.53001 * 109.47374 * 179.97438 * 13 12 11 17 17 C 1.50693 * 109.47605 * 184.99790 * 16 13 12 18 18 C 1.38263 * 119.99161 * 89.99509 * 17 16 13 19 19 C 1.38227 * 120.02488 * 179.72424 * 18 17 16 20 20 C 1.38234 * 120.01430 * 0.28273 * 19 18 17 21 21 C 1.38334 * 119.98337 * 359.97438 * 20 19 18 22 22 Cl 1.73599 * 120.00894 * 179.97438 * 21 20 19 23 23 C 1.38190 * 119.99673 * 270.27943 * 17 16 13 24 24 H 0.97003 * 119.99980 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47182 * 59.99670 * 9 7 2 26 26 H 1.09001 * 109.46932 * 300.00372 * 9 7 2 27 27 H 1.08998 * 109.47402 * 60.00093 * 10 9 7 28 28 H 1.09001 * 109.47223 * 299.99990 * 10 9 7 29 29 H 1.00896 * 111.00575 * 56.04313 * 11 10 9 30 30 H 1.09003 * 109.47407 * 59.99647 * 12 11 10 31 31 H 1.08998 * 109.46765 * 299.99254 * 12 11 10 32 32 H 0.96708 * 114.00018 * 299.99654 * 15 13 12 33 33 H 1.08998 * 109.46818 * 64.99807 * 16 13 12 34 34 H 1.09001 * 109.47102 * 305.00256 * 16 13 12 35 35 H 1.08002 * 119.98986 * 0.02562 * 18 17 16 36 36 H 1.08002 * 119.98919 * 180.30242 * 19 18 17 37 37 H 1.07993 * 120.00600 * 179.97438 * 20 19 18 38 38 H 1.08002 * 120.00565 * 359.97438 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0023 11 7 5.4906 -2.6364 -0.0022 12 6 6.0170 -4.0079 -0.0040 13 6 7.5465 -3.9670 -0.0045 14 1 7.8963 -3.4446 0.8859 15 8 8.0042 -3.2796 -1.1707 16 6 8.0949 -5.3953 -0.0056 17 6 9.5963 -5.3572 0.1176 18 6 10.1879 -5.3778 1.3671 19 6 11.5652 -5.3485 1.4808 20 6 12.3517 -5.2928 0.3453 21 6 11.7601 -5.2668 -0.9048 22 17 12.7472 -5.1962 -2.3312 23 6 10.3813 -5.2957 -1.0180 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6803 0.8888 26 1 3.8745 -0.6799 -0.8911 27 1 3.6580 -3.1497 -0.8924 28 1 3.6586 -3.1509 0.8875 29 1 5.8522 -2.1109 0.7795 30 1 5.6675 -4.5301 -0.8946 31 1 5.6676 -4.5322 0.8854 32 1 7.7294 -3.6898 -2.0023 33 1 7.8193 -5.8895 -0.9372 34 1 7.6751 -5.9464 0.8360 35 1 9.5739 -5.4216 2.2545 36 1 12.0269 -5.3696 2.4569 37 1 13.4277 -5.2696 0.4343 38 1 9.9190 -5.2754 -1.9938 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564873818.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:17 Heat of formation + Delta-G solvation = -71.815888 kcal Electronic energy + Delta-G solvation = -18904.209174 eV Core-core repulsion = 15770.585202 eV Total energy + Delta-G solvation = -3133.623972 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.108 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.53531 -38.85497 -37.41991 -36.80342 -34.85914 -33.76868 -32.22875 -31.63949 -29.87366 -27.06724 -24.95232 -23.60484 -22.84373 -22.35935 -21.82770 -18.96601 -18.06087 -17.49339 -16.95398 -16.44638 -16.34056 -16.25227 -15.87846 -15.61840 -14.95852 -14.77343 -14.65115 -14.40812 -14.16303 -13.88926 -13.56739 -13.01475 -12.93527 -12.78585 -12.45619 -12.41651 -12.17525 -12.00783 -11.88502 -11.84525 -11.70125 -11.66253 -11.41701 -10.84324 -10.77482 -9.79074 -9.56131 -9.25320 -8.30693 -6.35152 0.21830 0.35343 1.18377 1.37912 1.38195 1.51291 2.36309 2.66113 3.05038 3.19586 3.67972 3.72121 3.92037 4.02942 4.15174 4.25955 4.32839 4.37909 4.40989 4.47931 4.53181 4.60717 4.75776 4.84346 4.87306 4.97130 5.07137 5.17759 5.28856 5.30319 5.41198 5.48948 5.59747 5.62708 5.90254 6.15055 6.25139 6.52039 6.73542 6.97993 7.30045 8.85847 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.031856 B = 0.002543 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.735417 B =11008.368298 C =11278.436689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.954 3.046 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.248 1.248 7 C -0.534 4.534 8 H 0.033 0.967 9 C -0.005 4.005 10 C 0.088 3.912 11 N -0.690 5.690 12 C 0.027 3.973 13 C 0.126 3.874 14 H 0.090 0.910 15 O -0.563 6.563 16 C -0.106 4.106 17 C -0.068 4.068 18 C -0.121 4.121 19 C -0.109 4.109 20 C -0.126 4.126 21 C -0.050 4.050 22 Cl -0.080 7.080 23 C -0.107 4.107 24 H 0.267 0.733 25 H 0.018 0.982 26 H 0.019 0.981 27 H 0.056 0.944 28 H 0.017 0.983 29 H 0.340 0.660 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.381 0.619 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.146 0.854 36 H 0.155 0.845 37 H 0.143 0.857 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.538 -14.292 1.737 31.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.777 3.223 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.172 1.172 7 C -0.572 4.572 8 H 0.052 0.948 9 C -0.043 4.043 10 C -0.041 4.041 11 N -0.321 5.321 12 C -0.103 4.103 13 C 0.066 3.934 14 H 0.108 0.892 15 O -0.369 6.369 16 C -0.144 4.144 17 C -0.068 4.068 18 C -0.139 4.139 19 C -0.127 4.127 20 C -0.145 4.145 21 C -0.076 4.076 22 Cl -0.051 7.051 23 C -0.126 4.126 24 H 0.076 0.924 25 H 0.036 0.964 26 H 0.037 0.963 27 H 0.074 0.926 28 H 0.036 0.964 29 H 0.157 0.843 30 H 0.095 0.905 31 H 0.062 0.938 32 H 0.229 0.771 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.163 0.837 36 H 0.172 0.828 37 H 0.161 0.839 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 27.787 -13.729 1.365 31.023 hybrid contribution -0.698 0.093 0.212 0.735 sum 27.089 -13.636 1.577 30.368 Atomic orbital electron populations 1.70059 1.08251 1.28231 1.52539 1.25993 0.95627 1.03532 0.94017 0.85603 0.79373 0.78147 0.79146 1.19398 1.20874 1.17152 1.21419 0.91957 0.93222 1.50635 0.94850 1.19435 0.93503 0.94727 0.96625 1.21621 0.86481 0.97133 0.98891 1.60388 1.07058 1.14410 1.50229 1.22759 0.95892 0.89842 1.01764 1.21786 0.90497 0.91685 0.89389 0.89181 1.86601 1.77777 1.56233 1.16288 1.21301 0.90462 0.97242 1.05387 1.19824 0.95821 0.98491 0.92713 1.21493 0.95507 0.99278 0.97651 1.21413 0.93614 0.98605 0.99041 1.21294 1.01485 1.01073 0.90633 1.21117 0.92012 1.06198 0.88276 1.98366 1.70317 1.96905 1.39551 1.21047 0.91343 1.00269 0.99942 0.92420 0.96369 0.96293 0.92583 0.96448 0.84269 0.90497 0.93751 0.77059 0.89137 0.88076 0.83660 0.82775 0.83944 0.84828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.08 13.96 21.44 0.30 -59.79 16 2 C 0.01 0.31 5.47 84.65 0.46 0.77 16 3 Si 0.95 45.21 27.47 68.60 1.88 47.09 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16 7 C -0.53 -31.19 9.66 25.60 0.25 -30.94 16 8 H 0.03 2.12 7.99 -2.91 -0.02 2.10 16 9 C -0.01 -0.24 4.30 29.85 0.13 -0.11 16 10 C 0.09 3.43 5.62 86.30 0.49 3.92 16 11 N -0.69 -21.46 6.37 -513.89 -3.27 -24.74 16 12 C 0.03 0.60 5.35 86.30 0.46 1.06 16 13 C 0.13 2.33 3.16 30.59 0.10 2.42 16 14 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 15 O -0.56 -12.53 12.69 -148.98 -1.89 -14.42 16 16 C -0.11 -1.41 5.03 29.85 0.15 -1.25 16 17 C -0.07 -1.06 4.97 -19.87 -0.10 -1.16 16 18 C -0.12 -1.66 9.70 22.27 0.22 -1.45 16 19 C -0.11 -1.40 10.05 22.27 0.22 -1.18 16 20 C -0.13 -1.91 9.83 22.29 0.22 -1.69 16 21 C -0.05 -0.89 6.32 22.32 0.14 -0.74 16 22 Cl -0.08 -1.43 28.96 -2.72 -0.08 -1.50 16 23 C -0.11 -1.87 9.17 22.29 0.20 -1.67 16 24 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 25 H 0.02 0.84 7.20 -2.39 -0.02 0.83 16 26 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 27 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.34 10.17 8.73 -89.70 -0.78 9.39 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.38 6.39 9.05 -74.05 -0.67 5.72 16 33 H 0.09 1.03 8.09 -2.39 -0.02 1.01 16 34 H 0.10 1.05 8.09 -2.39 -0.02 1.03 16 35 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 36 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16 37 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 38 H 0.13 2.15 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -69.75 336.79 -0.57 -70.32 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -0.45 Total: 15.05 kcal Atomic # 6 Polarization: -34.95 SS G_CDS: 2.94 Total: -32.02 kcal Atomic # 7 Polarization: -81.55 SS G_CDS: -2.97 Total: -84.52 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -1.89 Total: -14.42 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.88 Total: 47.09 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.08 Total: -1.50 kcal Total: -69.75 -0.57 -70.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564873818.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.495 kcal (2) G-P(sol) polarization free energy of solvation -69.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds