Wall clock time and date at job start Tue Mar 31 2020 05:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42105 * 108.57563 * 2 1 4 4 O 1.42092 * 108.58244 * 228.97412 * 2 1 3 5 5 C 1.81400 * 101.91999 * 114.48206 * 2 1 3 6 6 C 1.52995 * 109.46954 * 174.05798 * 5 2 1 7 7 H 1.08997 * 109.47481 * 306.09664 * 6 5 2 8 8 N 1.46905 * 109.46854 * 66.09610 * 6 5 2 9 9 C 1.46900 * 110.99721 * 209.53376 * 8 6 5 10 10 C 1.50707 * 109.47040 * 175.10068 * 9 8 6 11 11 H 1.07995 * 119.99599 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00011 * 179.97438 * 10 9 8 13 13 N 1.31518 * 120.00133 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99973 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47098 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47050 * 120.00298 * 14 12 10 17 17 H 1.48505 * 109.46965 * 240.00320 * 14 12 10 18 18 C 1.50706 * 109.47180 * 186.09350 * 6 5 2 19 19 C 1.38236 * 119.99778 * 279.73389 * 18 6 5 20 20 C 1.38235 * 119.99340 * 179.78968 * 19 18 6 21 21 C 1.38239 * 120.00336 * 0.43401 * 20 19 18 22 22 C 1.38227 * 119.99796 * 359.81558 * 21 20 19 23 23 C 1.38233 * 119.99880 * 99.99971 * 18 6 5 24 24 H 1.08991 * 109.47434 * 305.51597 * 1 2 3 25 25 H 1.09007 * 109.46682 * 65.51720 * 1 2 3 26 26 H 1.08998 * 109.46979 * 185.50770 * 1 2 3 27 27 H 1.08998 * 109.46863 * 54.06197 * 5 2 1 28 28 H 1.09002 * 109.46951 * 294.06024 * 5 2 1 29 29 H 1.00897 * 111.00156 * 333.48974 * 8 6 5 30 30 H 1.09002 * 109.47204 * 55.10631 * 9 8 6 31 31 H 1.08997 * 109.47550 * 295.10268 * 9 8 6 32 32 H 0.97000 * 120.00139 * 180.02562 * 13 12 10 33 33 H 1.07993 * 120.00042 * 359.97438 * 19 18 6 34 34 H 1.08008 * 119.99620 * 180.26867 * 20 19 18 35 35 H 1.07993 * 119.99952 * 179.84025 * 21 20 19 36 36 H 1.08002 * 120.00214 * 180.02562 * 22 21 20 37 37 H 1.08008 * 119.99759 * 359.97438 * 23 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2669 -0.8841 -1.0161 5 6 2.1887 -0.7355 1.6153 6 6 3.6978 -0.9554 1.7378 7 1 4.0506 -1.5370 0.8862 8 7 4.3818 0.3445 1.7601 9 6 5.7312 0.2392 1.1892 10 6 6.3550 1.6093 1.1182 11 1 5.8042 2.4718 1.4631 12 6 7.6292 1.7613 0.6140 13 7 8.3001 0.7108 0.1944 14 14 8.4026 3.4594 0.5266 15 1 7.4479 4.4660 1.0563 16 1 9.6454 3.4796 1.3389 17 1 8.7288 3.7827 -0.8857 18 6 3.9949 -1.7013 3.0132 19 6 4.0361 -1.0230 4.2170 20 6 4.3044 -1.7080 5.3873 21 6 4.5402 -3.0696 5.3528 22 6 4.5041 -3.7469 4.1484 23 6 4.2317 -3.0627 2.9785 24 1 -0.3634 0.5969 0.8364 25 1 -0.3633 0.4259 -0.9353 26 1 -0.3633 -1.0229 0.0986 27 1 1.6736 -1.6917 1.7074 28 1 1.8538 -0.0647 2.4065 29 1 3.8396 1.0467 1.2795 30 1 5.6696 -0.1843 0.1868 31 1 6.3430 -0.4063 1.8194 32 1 9.1967 0.8178 -0.1600 33 1 3.8558 0.0415 4.2434 34 1 4.3323 -1.1787 6.3285 35 1 4.7523 -3.6043 6.2668 36 1 4.6880 -4.8108 4.1214 37 1 4.2033 -3.5920 2.0374 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591748049.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:01 Heat of formation + Delta-G solvation = -40.152759 kcal Electronic energy + Delta-G solvation = -20365.010042 eV Core-core repulsion = 17234.802792 eV Total energy + Delta-G solvation = -3130.207250 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.16275 -36.93297 -36.32428 -35.74094 -32.94409 -30.91336 -30.52067 -29.93846 -29.19547 -26.06896 -23.54603 -22.31044 -21.65992 -20.15942 -18.82190 -17.00186 -16.60827 -16.28076 -16.08670 -15.80230 -15.06103 -14.85722 -14.55417 -14.00454 -13.71158 -13.43469 -13.32591 -13.13691 -13.01838 -12.50152 -12.35000 -12.08804 -11.96790 -11.88087 -11.79768 -11.22558 -11.14304 -10.96303 -10.78015 -10.59782 -10.54287 -10.22684 -9.90306 -9.10706 -8.58736 -8.47209 -8.36364 -7.47967 -5.96718 -3.98117 -0.05011 1.65804 1.75347 2.72915 3.37283 3.43710 3.49994 3.64822 3.95133 4.09077 4.46023 4.60096 4.63430 4.74897 4.95325 5.05811 5.20958 5.28195 5.34254 5.39980 5.44769 5.46503 5.56061 5.85547 5.92288 6.00213 6.27376 6.40864 6.74632 6.82758 7.00560 7.24004 7.33634 7.44501 7.80280 8.13543 8.29314 8.58038 9.10012 9.65928 11.14738 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.010714 B = 0.007220 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.710175 B = 3876.969334 C = 5828.493749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.660 4.660 2 S 2.408 3.592 3 O -0.922 6.922 4 O -0.934 6.934 5 C -0.610 4.610 6 C 0.134 3.866 7 H 0.066 0.934 8 N -0.693 5.693 9 C 0.193 3.807 10 C -0.513 4.513 11 H 0.065 0.935 12 C 0.056 3.944 13 N -0.897 5.897 14 Si 0.899 3.101 15 H -0.271 1.271 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.056 4.056 19 C -0.079 4.079 20 C -0.129 4.129 21 C -0.128 4.128 22 C -0.128 4.128 23 C -0.118 4.118 24 H 0.128 0.872 25 H 0.128 0.872 26 H 0.126 0.874 27 H 0.134 0.866 28 H 0.141 0.859 29 H 0.345 0.655 30 H -0.008 1.008 31 H 0.033 0.967 32 H 0.261 0.739 33 H 0.133 0.867 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.598 -6.901 6.008 18.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.809 4.809 2 S 2.589 3.411 3 O -0.918 6.918 4 O -0.931 6.931 5 C -0.740 4.740 6 C 0.022 3.978 7 H 0.084 0.916 8 N -0.330 5.330 9 C 0.067 3.933 10 C -0.552 4.552 11 H 0.084 0.916 12 C -0.146 4.146 13 N -0.536 5.536 14 Si 0.727 3.273 15 H -0.195 1.195 16 H -0.211 1.211 17 H -0.210 1.210 18 C -0.058 4.058 19 C -0.097 4.097 20 C -0.147 4.147 21 C -0.146 4.146 22 C -0.146 4.146 23 C -0.137 4.137 24 H 0.147 0.853 25 H 0.146 0.854 26 H 0.144 0.856 27 H 0.152 0.848 28 H 0.160 0.840 29 H 0.167 0.833 30 H 0.010 0.990 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.150 0.850 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.668 -6.680 5.873 18.017 hybrid contribution -0.198 0.387 -0.370 0.571 sum -15.866 -6.293 5.503 17.934 Atomic orbital electron populations 1.30325 1.27623 1.11250 1.11673 1.08324 0.78190 0.76487 0.78095 1.93628 1.77977 1.33999 1.86191 1.93609 1.78642 1.67051 1.53821 1.30583 1.06210 1.14024 1.23169 1.20105 0.87365 0.94298 0.96024 0.91604 1.60871 1.06507 1.03402 1.62258 1.19672 0.83032 0.98086 0.92516 1.21199 0.99910 0.93164 1.40908 0.91638 1.24976 0.97124 0.97084 0.95373 1.69978 1.12074 1.29030 1.42548 0.86417 0.79074 0.84221 0.77580 1.19549 1.21066 1.21050 1.19681 0.98715 0.92816 0.94559 1.21079 0.96968 1.00454 0.91188 1.21158 1.00914 0.94394 0.98272 1.21058 1.01153 0.94793 0.97593 1.20989 1.01372 0.99510 0.92690 1.21062 1.00301 0.94060 0.98274 0.85311 0.85374 0.85571 0.84758 0.84037 0.83263 0.99035 0.94896 0.92978 0.84960 0.86492 0.86770 0.86574 0.86351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -4.79 10.62 101.05 1.07 -3.71 16 2 S 2.41 31.22 5.18 -107.50 -0.56 30.66 16 3 O -0.92 -15.93 15.82 -57.83 -0.91 -16.85 16 4 O -0.93 -15.84 17.96 -57.83 -1.04 -16.87 16 5 C -0.61 -7.26 5.31 37.15 0.20 -7.06 16 6 C 0.13 2.35 2.23 -68.86 -0.15 2.19 16 7 H 0.07 1.24 7.40 -51.93 -0.38 0.86 16 8 N -0.69 -15.12 5.58 -109.21 -0.61 -15.72 16 9 C 0.19 5.27 5.32 -4.97 -0.03 5.24 16 10 C -0.51 -15.16 9.27 -34.44 -0.32 -15.48 16 11 H 0.07 1.91 7.81 -52.49 -0.41 1.49 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.90 -27.67 13.29 55.43 0.74 -26.94 16 14 Si 0.90 22.52 29.54 -169.99 -5.02 17.50 16 15 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 18 C -0.06 -0.93 4.91 -104.62 -0.51 -1.45 16 19 C -0.08 -1.27 9.33 -39.58 -0.37 -1.64 16 20 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 21 C -0.13 -1.69 10.05 -39.59 -0.40 -2.09 16 22 C -0.13 -1.73 10.05 -39.59 -0.40 -2.13 16 23 C -0.12 -1.80 9.67 -39.58 -0.38 -2.18 16 24 H 0.13 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.13 0.86 8.14 -51.92 -0.42 0.44 16 26 H 0.13 0.63 8.14 -51.92 -0.42 0.21 16 27 H 0.13 1.10 8.14 -51.92 -0.42 0.68 16 28 H 0.14 1.38 8.14 -51.92 -0.42 0.95 16 29 H 0.34 7.42 5.45 -39.29 -0.21 7.21 16 30 H -0.01 -0.24 7.93 -51.93 -0.41 -0.65 16 31 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.13 2.16 7.71 -52.49 -0.40 1.75 16 34 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 35 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.12 1.63 8.04 -52.48 -0.42 1.21 16 LS Contribution 326.59 15.07 4.92 4.92 Total: -1.00 -37.55 326.59 -9.45 -47.00 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -5.19 Total: 5.27 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: -1.78 Total: -28.97 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.13 Total: -42.66 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -1.95 Total: -33.72 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Atomic # 16 Polarization: 31.22 SS G_CDS: -0.56 Total: 30.66 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -37.55 -9.45 -47.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591748049.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.850 kcal (2) G-P(sol) polarization free energy of solvation -37.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds