Wall clock time and date at job start Tue Mar 31 2020 05:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31261 * 1 3 3 Si 1.86798 * 119.99605 * 2 1 4 4 H 1.48508 * 109.46745 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47212 * 299.99851 * 3 2 1 6 6 H 1.48499 * 109.47104 * 60.00000 * 3 2 1 7 7 C 1.39208 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00103 * 200.13793 * 7 2 1 9 9 N 1.36645 * 119.99776 * 20.13492 * 7 2 1 10 10 C 1.34778 * 120.00025 * 37.05800 * 9 7 2 11 11 O 1.21560 * 120.00104 * 2.81572 * 10 9 7 12 12 C 1.48117 * 119.99995 * 182.82304 * 10 9 7 13 13 C 1.40284 * 119.21089 * 182.98698 * 12 10 9 14 14 C 1.36558 * 119.69636 * 179.76009 * 13 12 10 15 15 C 1.40662 * 118.22787 * 0.49720 * 14 13 12 16 16 C 1.40683 * 121.34989 * 179.72106 * 15 14 13 17 17 C 1.36622 * 118.13677 * 180.02562 * 16 15 14 18 18 C 1.39387 * 119.84639 * 0.02562 * 17 16 15 19 19 N 1.31044 * 121.83376 * 0.02562 * 18 17 16 20 20 C 1.33861 * 121.42360 * 359.97438 * 19 18 17 21 21 N 1.32003 * 119.21355 * 3.25241 * 12 10 9 22 22 C 1.46497 * 119.99814 * 217.32350 * 9 7 2 23 23 C 1.52997 * 117.50043 * 1.33951 * 22 9 7 24 24 C 1.52997 * 117.50528 * 292.67341 * 22 9 7 25 25 H 0.96998 * 120.00385 * 4.94734 * 1 2 3 26 26 H 1.07992 * 120.15196 * 359.97438 * 13 12 10 27 27 H 1.08001 * 120.88274 * 180.27314 * 14 13 12 28 28 H 1.07998 * 120.93165 * 0.02562 * 16 15 14 29 29 H 1.08006 * 120.07809 * 180.02562 * 17 16 15 30 30 H 1.08000 * 119.08670 * 179.97438 * 18 17 16 31 31 H 1.09007 * 115.54481 * 147.00477 * 22 9 7 32 32 H 1.08995 * 117.50234 * 359.97438 * 23 22 9 33 33 H 1.09002 * 117.49840 * 145.01751 * 23 22 9 34 34 H 1.08996 * 117.50236 * 214.97719 * 24 22 9 35 35 H 1.09005 * 117.49726 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2465 1.6178 0.0000 4 1 3.7066 1.3464 0.0006 5 1 1.8877 2.3965 -1.2125 6 1 1.8877 2.3964 1.2125 7 6 2.0087 -1.2056 0.0005 8 1 3.0391 -1.2340 0.3225 9 7 1.3881 -2.3530 -0.4063 10 6 0.5097 -2.3181 -1.4279 11 8 0.3078 -1.2762 -2.0207 12 6 -0.2098 -3.5494 -1.8283 13 6 -1.0727 -3.5093 -2.9336 14 6 -1.7372 -4.6399 -3.3144 15 6 -1.5355 -5.8140 -2.5665 16 6 -2.1911 -7.0140 -2.8970 17 6 -1.9474 -8.1149 -2.1255 18 6 -1.0700 -8.0252 -1.0462 19 7 -0.4620 -6.9052 -0.7409 20 6 -0.6552 -5.7892 -1.4545 21 7 -0.0277 -4.6568 -1.1333 22 6 1.6732 -3.6199 0.2718 23 6 2.6509 -3.5872 1.4481 24 6 3.0780 -4.2051 0.1143 25 1 -0.4850 0.8369 -0.0724 26 1 -1.2082 -2.5895 -3.4830 27 1 -2.4027 -4.6318 -4.1650 28 1 -2.8680 -7.0637 -3.7371 29 1 -2.4336 -9.0525 -2.3513 30 1 -0.8866 -8.9029 -0.4442 31 1 0.8398 -4.3202 0.3293 32 1 3.0824 -2.6231 1.7173 33 1 2.4610 -4.2662 2.2794 34 1 3.1690 -5.2903 0.0687 35 1 3.7901 -3.6476 -0.4942 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596915817.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:58 Heat of formation + Delta-G solvation = 103.734479 kcal Electronic energy + Delta-G solvation = -21835.421202 eV Core-core repulsion = 18608.302171 eV Total energy + Delta-G solvation = -3227.119031 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.87138 -38.78476 -37.07955 -35.85685 -33.83506 -32.91986 -31.31803 -30.62502 -30.31689 -25.96944 -24.58354 -23.70159 -22.42802 -21.56163 -21.01640 -20.17263 -18.30022 -17.63519 -16.86105 -16.01732 -15.83710 -14.88788 -14.79952 -14.58757 -14.32981 -13.89269 -13.81666 -13.48736 -13.07942 -12.98936 -12.53845 -12.05016 -11.77321 -11.56105 -11.28052 -10.96054 -10.88444 -10.82628 -10.54497 -10.34451 -10.11165 -9.88252 -9.46163 -8.95261 -8.65404 -8.56719 -8.45338 -7.98209 -7.12866 -6.26326 -3.91076 0.37889 0.83263 2.14169 2.87650 3.26456 3.34109 3.36342 3.94521 4.12446 4.19700 4.59738 4.65281 4.74489 4.82726 4.87562 4.93655 4.97117 5.22966 5.31160 5.39990 5.50673 5.71048 5.85327 5.97388 6.02957 6.07681 6.10916 6.28866 6.42948 6.44252 6.45735 6.65592 6.86396 7.01650 7.40125 7.43874 7.71423 8.05139 8.44876 8.83879 9.04710 9.48812 10.18344 10.75357 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.025303 B = 0.005614 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.331096 B = 4985.909250 C = 5851.055430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.059 3.941 3 Si 0.915 3.085 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.283 1.283 7 C -0.316 4.316 8 H 0.091 0.909 9 N -0.383 5.383 10 C 0.483 3.517 11 O -0.533 6.533 12 C 0.181 3.819 13 C -0.128 4.128 14 C -0.062 4.062 15 C -0.165 4.165 16 C -0.042 4.042 17 C -0.198 4.198 18 C 0.150 3.850 19 N -0.466 5.466 20 C 0.305 3.695 21 N -0.453 5.453 22 C 0.062 3.938 23 C -0.188 4.188 24 C -0.200 4.200 25 H 0.270 0.730 26 H 0.150 0.850 27 H 0.139 0.861 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.160 0.840 31 H 0.170 0.830 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.005 -13.373 -4.273 14.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.154 4.154 3 Si 0.741 3.259 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.209 1.209 7 C -0.444 4.444 8 H 0.109 0.891 9 N -0.099 5.099 10 C 0.273 3.727 11 O -0.412 6.412 12 C 0.027 3.973 13 C -0.149 4.149 14 C -0.088 4.088 15 C -0.171 4.171 16 C -0.068 4.068 17 C -0.218 4.218 18 C -0.027 4.027 19 N -0.175 5.175 20 C 0.067 3.933 21 N -0.167 5.167 22 C -0.043 4.043 23 C -0.226 4.226 24 C -0.238 4.238 25 H 0.081 0.919 26 H 0.168 0.832 27 H 0.157 0.843 28 H 0.153 0.847 29 H 0.153 0.847 30 H 0.177 0.823 31 H 0.186 0.814 32 H 0.118 0.882 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.108 -12.614 -3.072 13.350 hybrid contribution -0.826 0.591 -1.396 1.726 sum -3.934 -12.023 -4.468 13.416 Atomic orbital electron populations 1.69868 1.06911 1.28500 1.37557 1.25244 0.94830 0.99716 0.95598 0.86096 0.79947 0.82179 0.77719 1.19283 1.20347 1.20950 1.19356 0.95823 0.84913 1.44325 0.89098 1.42841 1.36711 1.05778 1.24613 1.17154 0.86261 0.85793 0.83540 1.90616 1.66284 1.29804 1.54527 1.22371 0.91888 0.92842 0.90223 1.21882 0.95952 0.99711 0.97340 1.21325 0.97933 0.91253 0.98290 1.19626 1.01748 0.95924 0.99757 1.21387 0.96076 0.91426 0.97960 1.21837 1.02038 0.99772 0.98171 1.22965 0.90711 0.95181 0.93833 1.67627 1.23085 0.98065 1.28757 1.19645 0.91939 0.91997 0.89751 1.68114 1.23117 0.97659 1.27833 1.23297 0.94344 0.89911 0.96770 1.23164 1.05559 1.02357 0.91515 1.23157 1.00683 0.99204 1.00790 0.91929 0.83223 0.84316 0.84696 0.84690 0.82268 0.81442 0.88216 0.89728 0.89748 0.89799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -23.19 11.26 55.51 0.63 -22.57 16 2 C 0.06 1.64 4.33 -17.44 -0.08 1.56 16 3 Si 0.91 21.26 29.60 -169.99 -5.03 16.23 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.32 -8.65 8.31 -15.05 -0.12 -8.77 16 8 H 0.09 2.37 6.83 -52.49 -0.36 2.01 16 9 N -0.38 -10.13 2.87 -108.72 -0.31 -10.44 16 10 C 0.48 12.93 6.91 -12.20 -0.08 12.85 16 11 O -0.53 -15.63 13.55 5.31 0.07 -15.56 16 12 C 0.18 4.09 6.68 -82.97 -0.55 3.53 16 13 C -0.13 -2.40 9.54 -39.42 -0.38 -2.78 16 14 C -0.06 -0.92 9.89 -39.27 -0.39 -1.31 16 15 C -0.16 -2.57 5.75 -106.68 -0.61 -3.18 16 16 C -0.04 -0.48 9.90 -39.24 -0.39 -0.87 16 17 C -0.20 -2.01 10.04 -39.74 -0.40 -2.41 16 18 C 0.15 1.82 11.14 -17.46 -0.19 1.63 16 19 N -0.47 -7.94 10.43 -12.60 -0.13 -8.07 16 20 C 0.31 5.73 7.62 -157.90 -1.20 4.52 16 21 N -0.45 -9.73 5.92 -9.20 -0.05 -9.78 16 22 C 0.06 1.42 5.32 -67.94 -0.36 1.06 16 23 C -0.19 -3.79 9.78 -26.69 -0.26 -4.05 16 24 C -0.20 -3.98 10.39 -26.69 -0.28 -4.26 16 25 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.15 2.74 7.60 -52.49 -0.40 2.34 16 27 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 28 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 29 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 30 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.17 3.92 4.94 -62.34 -0.31 3.61 16 32 H 0.10 2.09 6.51 -51.93 -0.34 1.75 16 33 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 LS Contribution 301.40 15.07 4.54 4.54 Total: -1.00 -33.46 301.40 -9.09 -42.55 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -3.50 Total: 5.57 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -5.30 Total: -2.47 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 0.13 Total: -50.86 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: 0.07 Total: -15.56 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.46 -9.09 -42.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596915817.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.281 kcal (2) G-P(sol) polarization free energy of solvation -33.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds