Wall clock time and date at job start Tue Mar 31 2020 05:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31300 * 1 3 3 Si 1.86798 * 120.00133 * 2 1 4 4 H 1.48500 * 109.46997 * 239.99951 * 3 2 1 5 5 H 1.48504 * 109.47178 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47161 * 119.99998 * 3 2 1 7 7 C 1.38992 * 119.99666 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99786 * 179.97438 * 7 2 1 9 9 N 1.37311 * 120.00246 * 0.27105 * 7 2 1 10 10 C 1.36497 * 126.06652 * 179.72593 * 9 7 2 11 11 C 1.35709 * 107.50057 * 180.02562 * 10 9 7 12 12 N 1.40499 * 126.08435 * 180.02562 * 11 10 9 13 13 C 1.34772 * 120.00344 * 180.02562 * 12 11 10 14 14 O 1.21730 * 119.99799 * 359.97438 * 13 12 11 15 15 C 1.46399 * 120.00578 * 180.02562 * 13 12 11 16 16 C 1.34817 * 120.00468 * 173.21729 * 15 13 12 17 17 C 1.47208 * 119.99873 * 349.02731 * 16 15 13 18 18 C 1.39830 * 120.17211 * 316.12001 * 17 16 15 19 19 C 1.37887 * 119.82986 * 179.67255 * 18 17 16 20 20 C 1.38411 * 120.16744 * 0.62182 * 19 18 17 21 21 C 1.38402 * 120.34062 * 359.67351 * 20 19 18 22 22 C 1.37890 * 120.17451 * 0.02562 * 21 20 19 23 23 C 1.40676 * 107.82985 * 0.02562 * 11 10 9 24 24 N 1.30897 * 108.38335 * 359.71558 * 23 11 10 25 25 H 0.97000 * 119.99702 * 0.02562 * 1 2 3 26 26 H 1.07998 * 126.24878 * 359.96698 * 10 9 7 27 27 H 0.97004 * 119.99911 * 359.97438 * 12 11 10 28 28 H 1.08001 * 119.99849 * 353.21111 * 15 13 12 29 29 H 1.08000 * 120.00126 * 169.03130 * 16 15 13 30 30 H 1.08007 * 120.08511 * 359.97009 * 18 17 16 31 31 H 1.07994 * 119.91889 * 180.31804 * 19 18 17 32 32 H 1.07991 * 119.82862 * 179.69844 * 20 19 18 33 33 H 1.08002 * 119.90783 * 180.02562 * 21 20 19 34 34 H 1.08008 * 120.08575 * 180.02562 * 22 21 20 35 35 H 1.07995 * 125.80780 * 180.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.1008 1.6963 -1.2125 5 1 1.2820 2.7465 -0.0006 6 1 3.1008 1.6963 1.2125 7 6 2.0079 -1.2037 -0.0005 8 1 3.0879 -1.2038 -0.0010 9 7 1.3213 -2.3929 -0.0067 10 6 1.8751 -3.6405 -0.0132 11 6 0.8576 -4.5385 -0.0184 12 7 0.9886 -5.9374 -0.0254 13 6 -0.1106 -6.7171 -0.0306 14 8 -1.2170 -6.2095 -0.0287 15 6 0.0258 -8.1747 -0.0373 16 6 -1.0658 -8.9547 0.0954 17 6 -2.3535 -8.3581 0.4867 18 6 -2.4062 -7.4122 1.5152 19 6 -3.6152 -6.8529 1.8713 20 6 -4.7764 -7.2350 1.2223 21 6 -4.7332 -8.1751 0.2075 22 6 -3.5310 -8.7389 -0.1643 23 6 -0.3515 -3.8195 -0.0156 24 7 -0.0715 -2.5409 -0.0028 25 1 -0.4850 0.8401 -0.0004 26 1 2.9302 -3.8708 -0.0150 27 1 1.8702 -6.3419 -0.0272 28 1 1.0010 -8.6253 -0.1487 29 1 -0.9956 -10.0171 -0.0852 30 1 -1.5016 -7.1170 2.0261 31 1 -3.6568 -6.1185 2.6620 32 1 -5.7210 -6.7970 1.5090 33 1 -5.6436 -8.4678 -0.2945 34 1 -3.4989 -9.4721 -0.9567 35 1 -1.3422 -4.2494 -0.0180 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747438779.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:41 Heat of formation + Delta-G solvation = 105.728781 kcal Electronic energy + Delta-G solvation = -20867.655731 eV Core-core repulsion = 17640.623180 eV Total energy + Delta-G solvation = -3227.032551 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.02867 -39.17334 -38.03428 -34.34412 -33.50534 -33.11682 -30.63331 -30.26178 -29.51322 -27.66926 -25.08153 -23.64992 -22.21638 -21.56094 -20.80770 -19.42436 -19.02398 -17.63425 -16.94906 -15.98510 -15.50004 -15.36922 -14.80600 -14.75130 -14.23895 -13.94816 -13.78549 -13.22922 -13.20893 -12.94110 -12.87185 -12.50230 -12.13975 -11.65813 -11.39061 -11.23657 -11.00239 -10.90794 -10.85498 -10.55111 -10.12534 -9.78600 -9.19542 -9.13361 -8.78208 -8.52684 -8.03169 -7.84130 -6.64194 -6.54133 -4.20485 0.91229 1.76152 2.09576 2.97201 3.05403 3.09470 3.42229 3.71208 3.85870 3.94602 4.13843 4.51405 4.78989 4.82760 5.03805 5.08624 5.20082 5.27154 5.36315 5.44043 5.68623 5.83189 6.09387 6.15997 6.26127 6.30416 6.35823 6.52878 6.72240 6.79552 6.86960 6.94632 7.01459 7.18208 7.27223 7.29214 7.88098 8.24580 8.33381 8.67433 8.95068 9.40028 9.69915 10.41792 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.028467 B = 0.003811 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.368791 B = 7345.008650 C = 8126.563507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.047 3.953 3 Si 0.934 3.066 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.324 4.324 8 H 0.115 0.885 9 N -0.143 5.143 10 C -0.086 4.086 11 C -0.059 4.059 12 N -0.618 5.618 13 C 0.517 3.483 14 O -0.523 6.523 15 C -0.199 4.199 16 C -0.037 4.037 17 C -0.069 4.069 18 C -0.030 4.030 19 C -0.131 4.131 20 C -0.110 4.110 21 C -0.139 4.139 22 C -0.104 4.104 23 C -0.030 4.030 24 N -0.262 5.262 25 H 0.275 0.725 26 H 0.145 0.855 27 H 0.396 0.604 28 H 0.129 0.871 29 H 0.131 0.869 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.206 -15.279 1.485 15.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.456 4.456 8 H 0.133 0.867 9 N 0.090 4.910 10 C -0.237 4.237 11 C -0.165 4.165 12 N -0.259 5.259 13 C 0.306 3.694 14 O -0.401 6.401 15 C -0.220 4.220 16 C -0.057 4.057 17 C -0.069 4.069 18 C -0.048 4.048 19 C -0.149 4.149 20 C -0.129 4.129 21 C -0.157 4.157 22 C -0.122 4.122 23 C -0.206 4.206 24 N -0.093 5.093 25 H 0.086 0.914 26 H 0.162 0.838 27 H 0.229 0.771 28 H 0.147 0.853 29 H 0.149 0.851 30 H 0.132 0.868 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.658 -13.538 1.494 13.877 hybrid contribution 1.479 -0.282 -0.180 1.516 sum -1.179 -13.820 1.315 13.932 Atomic orbital electron populations 1.70213 1.06122 1.28050 1.35282 1.25633 0.95690 1.00226 0.95502 0.85904 0.79150 0.79687 0.79453 1.19182 1.20129 1.19166 1.19820 0.91628 0.80627 1.53557 0.86719 1.44535 1.04066 1.03268 1.39160 1.21273 0.96821 0.85443 1.20143 1.17286 0.94271 0.81438 1.23517 1.42538 1.08272 1.04565 1.70493 1.18271 0.84576 0.87095 0.79474 1.90787 1.24815 1.74739 1.49796 1.23006 0.99217 0.93402 1.06398 1.22278 0.91437 0.98803 0.93208 1.18824 0.92492 0.98217 0.97367 1.21070 0.97101 0.91936 0.94685 1.20967 0.92636 1.00309 1.00985 1.21140 0.98090 0.97320 0.96311 1.20873 0.97465 0.98760 0.98622 1.21092 0.91941 0.99998 0.99158 1.24137 0.98075 0.90641 1.07706 1.78248 0.90077 1.15207 1.25732 0.91436 0.83796 0.77142 0.85343 0.85084 0.86841 0.86413 0.86710 0.86666 0.86601 0.80656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.74 11.81 55.50 0.66 -21.08 16 2 C 0.05 1.21 5.50 -17.50 -0.10 1.12 16 3 Si 0.93 19.05 29.55 -169.99 -5.02 14.03 16 4 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.32 -8.66 10.25 -14.82 -0.15 -8.81 16 8 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 9 N -0.14 -3.96 3.74 -11.40 -0.04 -4.00 16 10 C -0.09 -2.04 11.50 -16.38 -0.19 -2.23 16 11 C -0.06 -1.38 6.90 -83.87 -0.58 -1.96 16 12 N -0.62 -11.02 5.46 -11.26 -0.06 -11.08 16 13 C 0.52 9.02 6.76 -12.98 -0.09 8.93 16 14 O -0.52 -10.87 9.29 5.16 0.05 -10.83 16 15 C -0.20 -2.49 9.91 -37.51 -0.37 -2.86 16 16 C -0.04 -0.44 9.81 -37.15 -0.36 -0.80 16 17 C -0.07 -0.99 4.53 -105.06 -0.48 -1.46 16 18 C -0.03 -0.47 6.60 -39.11 -0.26 -0.73 16 19 C -0.13 -1.99 10.03 -39.65 -0.40 -2.39 16 20 C -0.11 -1.52 10.04 -39.46 -0.40 -1.91 16 21 C -0.14 -1.81 10.03 -39.65 -0.40 -2.20 16 22 C -0.10 -1.37 9.80 -39.11 -0.38 -1.75 16 23 C -0.03 -0.80 10.85 -17.03 -0.18 -0.98 16 24 N -0.26 -7.70 10.39 30.80 0.32 -7.38 16 25 H 0.28 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.14 2.86 8.06 -52.49 -0.42 2.43 16 27 H 0.40 5.43 8.80 -40.82 -0.36 5.07 16 28 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 29 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 30 H 0.11 1.86 7.04 -52.48 -0.37 1.49 16 31 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 32 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 33 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 35 H 0.18 4.66 5.91 -52.49 -0.31 4.35 16 LS Contribution 308.36 15.07 4.65 4.65 Total: -1.00 -33.82 308.36 -7.33 -41.15 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -3.54 Total: 12.59 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -4.33 Total: -18.05 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 0.87 Total: -43.55 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.05 Total: -10.83 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.03 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.82 -7.33 -41.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747438779.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.880 kcal (2) G-P(sol) polarization free energy of solvation -33.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds