Wall clock time and date at job start Tue Mar 31 2020 05:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31300 * 1 3 3 Si 1.86798 * 120.00133 * 2 1 4 4 H 1.48500 * 109.46997 * 239.99951 * 3 2 1 5 5 H 1.48504 * 109.47178 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47161 * 119.99998 * 3 2 1 7 7 C 1.38992 * 119.99666 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99786 * 179.97438 * 7 2 1 9 9 N 1.37311 * 120.00246 * 0.27105 * 7 2 1 10 10 C 1.36497 * 126.06652 * 179.72593 * 9 7 2 11 11 C 1.35709 * 107.50057 * 180.02562 * 10 9 7 12 12 N 1.40499 * 126.08435 * 180.02562 * 11 10 9 13 13 C 1.34772 * 120.00344 * 180.02562 * 12 11 10 14 14 O 1.21730 * 119.99799 * 359.97438 * 13 12 11 15 15 C 1.46399 * 120.00578 * 180.02562 * 13 12 11 16 16 C 1.34817 * 120.00468 * 173.21729 * 15 13 12 17 17 C 1.47208 * 119.99873 * 349.02731 * 16 15 13 18 18 C 1.39830 * 120.17211 * 316.12001 * 17 16 15 19 19 C 1.37887 * 119.82986 * 179.67255 * 18 17 16 20 20 C 1.38411 * 120.16744 * 0.62182 * 19 18 17 21 21 C 1.38402 * 120.34062 * 359.67351 * 20 19 18 22 22 C 1.37890 * 120.17451 * 0.02562 * 21 20 19 23 23 C 1.40676 * 107.82985 * 0.02562 * 11 10 9 24 24 N 1.30897 * 108.38335 * 359.71558 * 23 11 10 25 25 H 0.97000 * 119.99702 * 0.02562 * 1 2 3 26 26 H 1.07998 * 126.24878 * 359.96698 * 10 9 7 27 27 H 0.97004 * 119.99911 * 359.97438 * 12 11 10 28 28 H 1.08001 * 119.99849 * 353.21111 * 15 13 12 29 29 H 1.08000 * 120.00126 * 169.03130 * 16 15 13 30 30 H 1.08007 * 120.08511 * 359.97009 * 18 17 16 31 31 H 1.07994 * 119.91889 * 180.31804 * 19 18 17 32 32 H 1.07991 * 119.82862 * 179.69844 * 20 19 18 33 33 H 1.08002 * 119.90783 * 180.02562 * 21 20 19 34 34 H 1.08008 * 120.08575 * 180.02562 * 22 21 20 35 35 H 1.07995 * 125.80780 * 180.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.1008 1.6963 -1.2125 5 1 1.2820 2.7465 -0.0006 6 1 3.1008 1.6963 1.2125 7 6 2.0079 -1.2037 -0.0005 8 1 3.0879 -1.2038 -0.0010 9 7 1.3213 -2.3929 -0.0067 10 6 1.8751 -3.6405 -0.0132 11 6 0.8576 -4.5385 -0.0184 12 7 0.9886 -5.9374 -0.0254 13 6 -0.1106 -6.7171 -0.0306 14 8 -1.2170 -6.2095 -0.0287 15 6 0.0258 -8.1747 -0.0373 16 6 -1.0658 -8.9547 0.0954 17 6 -2.3535 -8.3581 0.4867 18 6 -2.4062 -7.4122 1.5152 19 6 -3.6152 -6.8529 1.8713 20 6 -4.7764 -7.2350 1.2223 21 6 -4.7332 -8.1751 0.2075 22 6 -3.5310 -8.7389 -0.1643 23 6 -0.3515 -3.8195 -0.0156 24 7 -0.0715 -2.5409 -0.0028 25 1 -0.4850 0.8401 -0.0004 26 1 2.9302 -3.8708 -0.0150 27 1 1.8702 -6.3419 -0.0272 28 1 1.0010 -8.6253 -0.1487 29 1 -0.9956 -10.0171 -0.0852 30 1 -1.5016 -7.1170 2.0261 31 1 -3.6568 -6.1185 2.6620 32 1 -5.7210 -6.7970 1.5090 33 1 -5.6436 -8.4678 -0.2945 34 1 -3.4989 -9.4721 -0.9567 35 1 -1.3422 -4.2494 -0.0180 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747438779.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:40 Heat of formation + Delta-G solvation = 83.989299 kcal Electronic energy + Delta-G solvation = -20868.598426 eV Core-core repulsion = 17640.623180 eV Total energy + Delta-G solvation = -3227.975246 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.70982 -40.64246 -39.32672 -35.95507 -34.92453 -34.65255 -32.24197 -31.71139 -30.73631 -29.40347 -26.92694 -24.93890 -23.34179 -22.90608 -22.60704 -21.23729 -20.32555 -19.30621 -18.25702 -17.42572 -17.15474 -16.94370 -16.11517 -15.97475 -15.74364 -15.47256 -15.01735 -14.89241 -14.79645 -14.30227 -14.15062 -13.61945 -13.44934 -13.26252 -13.21326 -12.86606 -12.85170 -12.14311 -12.00967 -11.93895 -11.75065 -10.96888 -10.87552 -10.79525 -10.51969 -10.08724 -9.64359 -8.97296 -8.46783 -8.45954 -6.23330 -0.13757 0.65567 1.00728 1.32566 1.39052 1.55645 1.75716 2.09169 2.19036 2.43475 2.77039 2.98035 3.04998 3.09679 3.88008 4.03392 4.15066 4.18584 4.31161 4.44080 4.57087 4.63349 4.65317 4.77204 5.00074 5.06379 5.11928 5.18446 5.27066 5.30163 5.43058 5.55358 5.65894 5.71254 5.80755 5.96841 6.21834 6.35558 6.75449 6.87899 7.46245 7.54024 7.71361 8.52646 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.028467 B = 0.003811 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.368791 B = 7345.008650 C = 8126.563507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C -0.006 4.006 3 Si 1.019 2.981 4 H -0.253 1.253 5 H -0.278 1.278 6 H -0.253 1.253 7 C -0.357 4.357 8 H 0.140 0.860 9 N -0.169 5.169 10 C -0.085 4.085 11 C -0.042 4.042 12 N -0.614 5.614 13 C 0.511 3.489 14 O -0.560 6.560 15 C -0.204 4.204 16 C -0.020 4.020 17 C -0.086 4.086 18 C -0.052 4.052 19 C -0.157 4.157 20 C -0.122 4.122 21 C -0.143 4.143 22 C -0.108 4.108 23 C -0.056 4.056 24 N -0.313 5.313 25 H 0.276 0.724 26 H 0.187 0.813 27 H 0.418 0.582 28 H 0.175 0.825 29 H 0.181 0.819 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.132 0.868 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.590 -17.529 0.617 17.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.218 4.218 3 Si 0.838 3.162 4 H -0.177 1.177 5 H -0.203 1.203 6 H -0.177 1.177 7 C -0.488 4.488 8 H 0.158 0.842 9 N 0.062 4.938 10 C -0.235 4.235 11 C -0.148 4.148 12 N -0.258 5.258 13 C 0.302 3.698 14 O -0.441 6.441 15 C -0.225 4.225 16 C -0.040 4.040 17 C -0.086 4.086 18 C -0.070 4.070 19 C -0.175 4.175 20 C -0.140 4.140 21 C -0.161 4.161 22 C -0.126 4.126 23 C -0.232 4.232 24 N -0.145 5.145 25 H 0.085 0.915 26 H 0.204 0.796 27 H 0.255 0.745 28 H 0.193 0.807 29 H 0.198 0.802 30 H 0.113 0.887 31 H 0.130 0.870 32 H 0.150 0.850 33 H 0.162 0.838 34 H 0.166 0.834 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.829 -15.858 0.630 15.892 hybrid contribution 0.807 0.206 0.109 0.840 sum -0.023 -15.651 0.739 15.669 Atomic orbital electron populations 1.70407 1.08469 1.29089 1.37477 1.26884 0.96444 1.04334 0.94101 0.84653 0.77543 0.73716 0.80284 1.17709 1.20303 1.17681 1.20584 0.92961 0.81004 1.54222 0.84237 1.44816 1.03605 1.04784 1.40607 1.22015 0.98809 0.84300 1.18358 1.17361 0.92660 0.84088 1.20689 1.42514 1.10009 1.02219 1.71091 1.19290 0.83654 0.89298 0.77569 1.90789 1.26401 1.76002 1.50865 1.23077 1.01779 0.89758 1.07870 1.22756 0.89540 1.00930 0.90752 1.19222 0.94586 0.97897 0.96941 1.21063 0.96491 0.93373 0.96084 1.21137 0.93625 1.00947 1.01801 1.21423 0.98224 0.97774 0.96595 1.21299 0.98862 0.97904 0.97994 1.21523 0.91432 1.00201 0.99395 1.24129 0.98972 0.90813 1.09245 1.78132 0.92042 1.16767 1.27532 0.91468 0.79641 0.74463 0.80738 0.80209 0.88696 0.87027 0.84959 0.83806 0.83438 0.81773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.72 11.81 21.66 0.26 -48.47 16 2 C -0.01 -0.33 5.50 84.95 0.47 0.14 16 3 Si 1.02 39.18 29.55 68.60 2.03 41.20 16 4 H -0.25 -9.07 7.11 99.48 0.71 -8.36 16 5 H -0.28 -10.60 7.11 99.48 0.71 -9.89 16 6 H -0.25 -9.05 7.11 99.48 0.71 -8.35 16 7 C -0.36 -19.26 10.25 84.02 0.86 -18.40 16 8 H 0.14 6.50 7.83 -2.91 -0.02 6.48 16 9 N -0.17 -9.58 3.74 -189.99 -0.71 -10.29 16 10 C -0.08 -3.99 11.50 83.38 0.96 -3.03 16 11 C -0.04 -1.94 6.90 37.76 0.26 -1.68 16 12 N -0.61 -21.13 5.46 -307.74 -1.68 -22.81 16 13 C 0.51 17.33 6.76 86.37 0.58 17.92 16 14 O -0.56 -23.82 9.29 -4.45 -0.04 -23.86 16 15 C -0.20 -4.41 9.91 23.61 0.23 -4.18 16 16 C -0.02 -0.41 9.81 23.84 0.23 -0.17 16 17 C -0.09 -2.35 4.53 -20.15 -0.09 -2.44 16 18 C -0.05 -1.69 6.60 22.57 0.15 -1.54 16 19 C -0.16 -5.05 10.03 22.23 0.22 -4.83 16 20 C -0.12 -3.38 10.04 22.35 0.22 -3.15 16 21 C -0.14 -3.48 10.03 22.23 0.22 -3.25 16 22 C -0.11 -2.59 9.80 22.57 0.22 -2.36 16 23 C -0.06 -3.14 10.85 85.43 0.93 -2.22 16 24 N -0.31 -19.33 10.39 -56.46 -0.59 -19.91 16 25 H 0.28 14.98 8.31 -92.71 -0.77 14.21 16 26 H 0.19 6.89 8.06 -2.91 -0.02 6.87 16 27 H 0.42 10.32 8.80 -92.71 -0.82 9.51 16 28 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 29 H 0.18 1.84 8.06 -2.91 -0.02 1.82 16 30 H 0.09 3.32 7.04 -2.91 -0.02 3.29 16 31 H 0.11 3.51 8.06 -2.91 -0.02 3.49 16 32 H 0.13 3.03 8.06 -2.92 -0.02 3.00 16 33 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 34 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 35 H 0.17 9.37 5.91 -2.91 -0.02 9.35 16 Total: -1.00 -79.77 308.36 5.05 -74.72 By element: Atomic # 1 Polarization: 38.31 SS G_CDS: 0.31 Total: 38.62 kcal Atomic # 6 Polarization: -34.68 SS G_CDS: 5.48 Total: -29.21 kcal Atomic # 7 Polarization: -98.76 SS G_CDS: -2.72 Total: -101.48 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.04 Total: -23.86 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 2.03 Total: 41.20 kcal Total: -79.77 5.05 -74.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747438779.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.713 kcal (2) G-P(sol) polarization free energy of solvation -79.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds