Wall clock time and date at job start Tue Mar 31 2020 05:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86802 * 119.99568 * 2 1 4 4 H 1.48500 * 109.46599 * 239.99619 * 3 2 1 5 5 H 1.48499 * 109.47151 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47293 * 120.00032 * 3 2 1 7 7 C 1.39939 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00272 * 163.71792 * 7 2 1 9 9 C 1.41397 * 120.00128 * 343.72382 * 7 2 1 10 10 C 1.40727 * 120.24273 * 334.18588 * 9 7 2 11 11 C 1.37604 * 119.74490 * 180.31860 * 10 9 7 12 12 C 1.38660 * 120.24615 * 359.66149 * 11 10 9 13 13 C 1.38613 * 120.50039 * 0.02562 * 12 11 10 14 14 C 1.37638 * 120.24927 * 0.02562 * 13 12 11 15 15 C 1.50706 * 120.12767 * 179.97438 * 14 13 12 16 16 C 1.50693 * 109.47015 * 265.00680 * 15 14 13 17 17 O 1.21271 * 120.00294 * 359.97438 * 16 15 14 18 18 N 1.34782 * 119.99914 * 180.02562 * 16 15 14 19 19 C 1.38929 * 120.00167 * 179.72361 * 18 16 15 20 20 N 1.32412 * 119.20368 * 359.97438 * 19 18 16 21 21 C 1.32280 * 120.75139 * 179.76008 * 20 19 18 22 22 C 1.38617 * 119.18284 * 0.50823 * 21 20 19 23 23 C 1.38612 * 118.53359 * 359.74978 * 22 21 20 24 24 N 1.32273 * 119.19062 * 359.97438 * 23 22 21 25 25 H 0.96999 * 120.00801 * 0.02562 * 1 2 3 26 26 H 1.07994 * 120.13317 * 0.02562 * 10 9 7 27 27 H 1.07997 * 119.87744 * 179.68013 * 11 10 9 28 28 H 1.08001 * 119.74911 * 180.02562 * 12 11 10 29 29 H 1.08001 * 119.87559 * 180.02562 * 13 12 11 30 30 H 1.08996 * 109.46674 * 145.00311 * 15 14 13 31 31 H 1.08996 * 109.46685 * 25.00311 * 15 14 13 32 32 H 0.96999 * 119.99758 * 359.97438 * 18 16 15 33 33 H 1.07999 * 120.40800 * 180.23291 * 21 20 19 34 34 H 1.07996 * 120.73393 * 179.76905 * 22 21 20 35 35 H 1.08012 * 120.40488 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2770 2.7465 -0.0006 6 1 3.0958 1.6966 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0555 -1.2307 -0.2617 9 6 1.3436 -2.4118 0.3443 10 6 0.2102 -2.3807 1.1778 11 6 -0.4246 -3.5552 1.5112 12 6 0.0444 -4.7654 1.0233 13 6 1.1560 -4.8073 0.1963 14 6 1.8073 -3.6450 -0.1494 15 6 3.0159 -3.6938 -1.0483 16 6 4.2663 -3.7193 -0.2077 17 8 4.1843 -3.6993 1.0021 18 7 5.4760 -3.7632 -0.8004 19 6 6.6291 -3.7809 -0.0256 20 7 6.5213 -3.7536 1.2939 21 6 7.5986 -3.7741 2.0611 22 6 8.8506 -3.8140 1.4673 23 6 8.9266 -3.8364 0.0835 24 7 7.8094 -3.8196 -0.6244 25 1 -0.4851 0.8400 -0.0004 26 1 -0.1573 -1.4391 1.5584 27 1 -1.2915 -3.5342 2.1549 28 1 -0.4602 -5.6824 1.2897 29 1 1.5124 -5.7555 -0.1783 30 1 3.0272 -2.8128 -1.6899 31 1 2.9742 -4.5917 -1.6647 32 1 5.5417 -3.7788 -1.7680 33 1 7.5041 -3.7554 3.1368 34 1 9.7469 -3.8277 2.0696 35 1 9.8865 -3.8681 -0.4108 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776760601.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:04 Heat of formation + Delta-G solvation = 50.163079 kcal Electronic energy + Delta-G solvation = -21181.161867 eV Core-core repulsion = 17951.719806 eV Total energy + Delta-G solvation = -3229.442061 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.09951 -39.12748 -37.34361 -34.64050 -33.62457 -33.59813 -31.87985 -30.65132 -29.44627 -27.00213 -25.11437 -24.63961 -23.62566 -20.96967 -20.81163 -19.46735 -18.29597 -17.27358 -17.11918 -15.86550 -15.82341 -15.60042 -15.27924 -14.65580 -14.37483 -14.25116 -13.61003 -13.41815 -13.25164 -13.17766 -12.57088 -11.76765 -11.56337 -11.29840 -11.12695 -11.08099 -10.96985 -10.79929 -10.69461 -10.61629 -10.40037 -9.48763 -9.46268 -9.37195 -9.14910 -8.77493 -8.54723 -7.31497 -7.29649 -6.73269 -4.34451 1.01093 1.18561 2.66591 2.87010 3.06549 3.10277 3.14114 3.17464 3.29082 3.94470 4.02513 4.19862 4.58725 4.66205 4.73810 5.10512 5.18157 5.41573 5.73727 5.75761 5.96593 6.04938 6.14120 6.28542 6.40164 6.51694 6.63966 6.78550 7.08879 7.13586 7.29653 7.34129 7.42531 7.65407 7.92365 8.06391 8.13736 8.31416 8.33312 8.64407 8.70086 8.91596 9.01547 10.20715 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.015411 B = 0.005621 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.443907 B = 4980.546401 C = 6144.516444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.078 3.922 3 Si 0.902 3.098 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.457 4.457 8 H 0.072 0.928 9 C 0.131 3.869 10 C -0.158 4.158 11 C -0.105 4.105 12 C -0.239 4.239 13 C -0.078 4.078 14 C -0.187 4.187 15 C -0.064 4.064 16 C 0.503 3.497 17 O -0.443 6.443 18 N -0.649 5.649 19 C 0.543 3.457 20 N -0.500 5.500 21 C 0.178 3.822 22 C -0.277 4.277 23 C 0.175 3.825 24 N -0.559 5.559 25 H 0.280 0.720 26 H 0.117 0.883 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.419 0.581 33 H 0.168 0.832 34 H 0.144 0.856 35 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.294 -4.441 -1.630 14.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.486 4.486 8 H 0.091 0.909 9 C 0.129 3.871 10 C -0.177 4.177 11 C -0.124 4.124 12 C -0.259 4.259 13 C -0.096 4.096 14 C -0.189 4.189 15 C -0.104 4.104 16 C 0.289 3.711 17 O -0.307 6.307 18 N -0.300 5.300 19 C 0.188 3.812 20 N -0.220 5.220 21 C 0.009 3.991 22 C -0.302 4.302 23 C 0.008 3.992 24 N -0.280 5.280 25 H 0.091 0.909 26 H 0.135 0.865 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.119 0.881 31 H 0.100 0.900 32 H 0.256 0.744 33 H 0.185 0.815 34 H 0.162 0.838 35 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 11.981 -4.232 -1.331 12.776 hybrid contribution 1.316 0.796 0.036 1.538 sum 13.297 -3.435 -1.294 13.794 Atomic orbital electron populations 1.69802 1.07432 1.29207 1.35470 1.25855 0.94688 1.01081 0.92303 0.86465 0.80249 0.80629 0.79990 1.19085 1.20256 1.18907 1.19431 0.97083 0.91032 1.41073 0.90942 1.17319 0.90756 0.91184 0.87880 1.21296 0.98923 0.96699 1.00813 1.20690 0.98628 0.93450 0.99622 1.20306 1.01583 0.96179 1.07799 1.20301 0.95866 0.95481 0.97974 1.18998 0.99386 0.94165 1.06388 1.20268 0.89370 1.03334 0.97394 1.21778 0.83255 0.75861 0.90200 1.90800 1.85161 1.40785 1.13971 1.43865 1.03157 1.72448 1.10504 1.19739 0.85995 0.89297 0.86150 1.68620 1.32999 1.16330 1.04071 1.23260 0.87076 0.88014 1.00719 1.22688 1.00390 1.09841 0.97269 1.22896 0.95975 0.89257 0.91059 1.67836 0.98080 1.20427 1.41655 0.90864 0.86490 0.89541 0.89620 0.89692 0.88071 0.90036 0.74397 0.81487 0.83816 0.81522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.49 10.95 55.55 0.61 -19.88 16 2 C 0.08 1.98 5.16 -17.35 -0.09 1.89 16 3 Si 0.90 19.15 29.59 -169.99 -5.03 14.12 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.46 -12.05 8.14 -37.74 -0.31 -12.36 16 8 H 0.07 1.87 6.67 -52.48 -0.35 1.52 16 9 C 0.13 3.50 5.56 -106.83 -0.59 2.90 16 10 C -0.16 -4.22 8.69 -38.87 -0.34 -4.56 16 11 C -0.11 -2.57 10.02 -39.66 -0.40 -2.97 16 12 C -0.24 -5.57 10.05 -39.29 -0.39 -5.96 16 13 C -0.08 -1.79 9.66 -39.66 -0.38 -2.17 16 14 C -0.19 -4.48 4.43 -103.91 -0.46 -4.94 16 15 C -0.06 -1.23 5.18 -29.04 -0.15 -1.38 16 16 C 0.50 10.08 7.40 -10.99 -0.08 9.99 16 17 O -0.44 -10.78 14.23 5.57 0.08 -10.70 16 18 N -0.65 -10.72 5.40 -13.07 -0.07 -10.79 16 19 C 0.54 9.27 8.38 -322.26 -2.70 6.57 16 20 N -0.50 -9.08 7.87 -13.83 -0.11 -9.18 16 21 C 0.18 2.36 11.30 -17.22 -0.19 2.17 16 22 C -0.28 -2.81 10.17 -39.30 -0.40 -3.21 16 23 C 0.18 1.90 11.30 -17.22 -0.19 1.70 16 24 N -0.56 -8.02 10.46 -13.83 -0.14 -8.16 16 25 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 26 H 0.12 3.21 6.20 -52.49 -0.33 2.89 16 27 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 28 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 29 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.10 1.90 7.08 -51.93 -0.37 1.53 16 31 H 0.08 1.28 8.05 -51.93 -0.42 0.87 16 32 H 0.42 5.37 8.81 -40.82 -0.36 5.01 16 33 H 0.17 1.74 8.06 -52.49 -0.42 1.31 16 34 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.17 1.12 8.06 -52.48 -0.42 0.69 16 LS Contribution 308.73 15.07 4.65 4.65 Total: -1.00 -33.11 308.73 -10.19 -43.30 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -3.49 Total: 8.97 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -6.69 Total: -12.33 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: 0.28 Total: -48.01 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.08 Total: -10.70 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.11 -10.19 -43.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776760601.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.467 kcal (2) G-P(sol) polarization free energy of solvation -33.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds