Wall clock time and date at job start Tue Mar 31 2020 05:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31194 * 1 3 3 Si 1.86800 * 119.99909 * 2 1 4 4 H 1.48501 * 109.46966 * 270.00405 * 3 2 1 5 5 H 1.48508 * 109.46905 * 29.99949 * 3 2 1 6 6 H 1.48495 * 109.47234 * 149.99884 * 3 2 1 7 7 C 1.39298 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99626 * 198.19106 * 7 2 1 9 9 C 1.40961 * 120.00341 * 18.20478 * 7 2 1 10 10 C 1.40949 * 120.06869 * 204.89189 * 9 7 2 11 11 C 1.36005 * 119.93524 * 180.02562 * 10 9 7 12 12 C 1.40395 * 120.06636 * 359.97438 * 11 10 9 13 13 C 1.46864 * 119.93377 * 180.02562 * 12 11 10 14 14 O 1.21837 * 119.99827 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00375 * 179.97438 * 13 12 11 16 16 N 1.40094 * 120.00548 * 179.97438 * 15 13 12 17 17 C 1.32934 * 120.00433 * 180.02562 * 16 15 13 18 18 C 1.42144 * 120.70053 * 359.72489 * 17 16 15 19 19 C 1.35028 * 119.20277 * 179.71586 * 18 17 16 20 20 N 1.36016 * 120.73316 * 0.56924 * 19 18 17 21 21 H 0.97001 * 119.23398 * 179.72423 * 20 19 18 22 22 C 1.36022 * 121.52967 * 359.70529 * 20 19 18 23 23 C 1.35022 * 120.73085 * 359.97438 * 22 20 19 24 24 C 1.40397 * 120.13254 * 0.27562 * 12 11 10 25 25 C 1.36002 * 120.06625 * 359.44796 * 24 12 11 26 26 H 0.96997 * 120.00134 * 359.97438 * 1 2 3 27 27 H 1.08006 * 120.03272 * 359.97438 * 10 9 7 28 28 H 1.08002 * 119.96564 * 179.97438 * 11 10 9 29 29 H 0.97010 * 119.99699 * 0.02562 * 15 13 12 30 30 H 1.08001 * 120.40101 * 359.97438 * 18 17 16 31 31 H 1.08003 * 119.63332 * 180.29415 * 19 18 17 32 32 H 1.08003 * 119.63132 * 180.02562 * 22 20 19 33 33 H 1.07994 * 120.39840 * 180.02562 * 23 22 20 34 34 H 1.08003 * 119.96448 * 179.70121 * 24 12 11 35 35 H 1.08001 * 120.03319 * 180.27239 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3119 0.0000 0.0000 3 14 2.2459 1.6178 0.0000 4 1 2.4933 2.0465 -1.4001 5 1 1.4433 2.6527 0.7001 6 1 3.5434 1.4402 0.7000 7 6 2.0084 -1.2064 0.0005 8 1 3.0479 -1.2296 0.2926 9 6 1.3566 -2.3968 -0.3803 10 6 1.8254 -3.6401 0.0898 11 6 1.1947 -4.7870 -0.2798 12 6 0.0774 -4.7333 -1.1282 13 6 -0.6018 -5.9736 -1.5250 14 8 -0.1957 -7.0476 -1.1176 15 7 -1.6747 -5.9236 -2.3390 16 7 -2.3223 -7.1067 -2.7180 17 6 -3.3803 -7.0575 -3.5213 18 6 -3.8708 -5.8121 -3.9999 19 6 -4.9441 -5.7977 -4.8190 20 7 -5.5609 -6.9559 -5.1770 21 1 -6.3328 -6.9199 -5.7634 22 6 -5.1203 -8.1634 -4.7321 23 6 -4.0484 -8.2486 -3.9155 24 6 -0.3888 -3.4968 -1.6024 25 6 0.2344 -2.3461 -1.2317 26 1 -0.4850 0.8400 0.0004 27 1 2.6851 -3.6821 0.7422 28 1 1.5537 -5.7400 0.0798 29 1 -1.9982 -5.0684 -2.6632 30 1 -3.3883 -4.8888 -3.7151 31 1 -5.3197 -4.8557 -5.1906 32 1 -5.6331 -9.0640 -5.0360 33 1 -3.7029 -9.2102 -3.5658 34 1 -1.2456 -3.4590 -2.2588 35 1 -0.1274 -1.3949 -1.5932 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780762533.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:41 Heat of formation + Delta-G solvation = 58.959112 kcal Electronic energy + Delta-G solvation = -20222.065793 eV Core-core repulsion = 16993.005157 eV Total energy + Delta-G solvation = -3229.060636 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.25677 -38.77570 -37.07361 -35.64974 -33.82323 -32.59308 -31.57917 -30.30223 -29.45574 -28.48894 -25.83340 -23.53565 -22.72062 -21.51657 -20.84928 -19.54078 -19.13045 -17.66443 -17.45613 -16.64664 -15.85625 -15.44607 -14.91151 -14.47934 -14.29703 -13.98491 -13.85432 -13.85293 -13.14364 -12.95586 -12.65312 -12.13638 -11.97270 -11.88046 -11.81123 -11.31645 -11.27980 -10.93555 -10.64131 -10.01934 -9.75561 -9.68275 -9.50530 -9.33419 -9.24606 -8.87006 -7.73524 -7.53751 -7.02832 -6.71146 -4.60407 1.34257 1.43035 2.26569 2.93031 2.93349 2.96646 2.99251 3.05964 3.42477 3.64378 3.75179 4.07557 4.51389 4.64865 4.68760 5.09572 5.25493 5.41869 5.58538 5.74883 5.98811 6.02252 6.14054 6.30261 6.34412 6.54705 6.77807 6.84574 6.88663 7.02588 7.12431 7.15632 7.44387 7.65455 7.79150 7.86375 8.04718 8.10861 8.39634 8.46689 8.63859 8.75023 9.39063 9.89713 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.025205 B = 0.003370 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.603533 B = 8307.176297 C = 9337.593896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.072 3.928 3 Si 0.916 3.084 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.438 4.438 8 H 0.086 0.914 9 C 0.130 3.870 10 C -0.237 4.237 11 C -0.017 4.017 12 C -0.281 4.281 13 C 0.585 3.415 14 O -0.550 6.550 15 N -0.582 5.582 16 N -0.276 5.276 17 C 0.144 3.856 18 C -0.247 4.247 19 C 0.124 3.876 20 N -0.619 5.619 21 H 0.413 0.587 22 C 0.098 3.902 23 C -0.168 4.168 24 C -0.063 4.063 25 C -0.175 4.175 26 H 0.285 0.715 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.378 0.622 30 H 0.131 0.869 31 H 0.157 0.843 32 H 0.160 0.840 33 H 0.142 0.858 34 H 0.086 0.914 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.128 -4.696 -11.580 18.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.148 4.148 3 Si 0.739 3.261 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.466 4.466 8 H 0.104 0.896 9 C 0.127 3.873 10 C -0.257 4.257 11 C -0.037 4.037 12 C -0.287 4.287 13 C 0.380 3.620 14 O -0.429 6.429 15 N -0.325 5.325 16 N -0.088 5.088 17 C -0.034 4.034 18 C -0.276 4.276 19 C -0.004 4.004 20 N -0.229 5.229 21 H 0.247 0.753 22 C -0.029 4.029 23 C -0.195 4.195 24 C -0.083 4.083 25 C -0.195 4.195 26 H 0.096 0.904 27 H 0.118 0.882 28 H 0.122 0.878 29 H 0.217 0.783 30 H 0.149 0.851 31 H 0.174 0.826 32 H 0.177 0.823 33 H 0.160 0.840 34 H 0.104 0.896 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.240 -5.795 -10.606 17.201 hybrid contribution -0.672 1.999 -0.728 2.231 sum -12.912 -3.797 -11.334 17.596 Atomic orbital electron populations 1.69999 1.07637 1.29878 1.32428 1.25997 0.94892 1.01913 0.92006 0.86177 0.80510 0.79794 0.79596 1.18970 1.20048 1.18306 1.19659 0.98668 0.91394 1.36902 0.89627 1.17802 0.90228 0.92219 0.87065 1.20674 1.04760 0.92587 1.07642 1.20373 0.92593 0.97349 0.93340 1.18842 1.04862 0.90567 1.14436 1.18285 0.77571 0.89840 0.76302 1.90688 1.65255 1.31527 1.55389 1.46760 1.30796 1.04953 1.49945 1.76246 1.08542 1.08638 1.15369 1.19573 0.94458 0.92891 0.96516 1.21080 1.01382 0.98939 1.06157 1.21448 0.93728 0.89504 0.95687 1.40910 1.30829 1.04448 1.46726 0.75334 1.21440 0.96490 0.88234 0.96697 1.20280 0.97739 0.98009 1.03482 1.20479 0.97349 0.92659 0.97772 1.20897 0.99976 0.96851 1.01746 0.90372 0.88184 0.87834 0.78314 0.85104 0.82609 0.82277 0.83980 0.89621 0.86149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.74 10.98 55.51 0.61 -18.13 16 2 C 0.07 1.69 5.11 -17.43 -0.09 1.60 16 3 Si 0.92 17.41 29.59 -169.99 -5.03 12.38 16 4 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 6 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 7 C -0.44 -11.00 8.99 -38.16 -0.34 -11.34 16 8 H 0.09 2.05 7.90 -52.48 -0.41 1.63 16 9 C 0.13 3.37 5.57 -106.81 -0.59 2.78 16 10 C -0.24 -5.89 9.72 -39.36 -0.38 -6.27 16 11 C -0.02 -0.43 9.52 -39.57 -0.38 -0.80 16 12 C -0.28 -6.91 5.89 -104.78 -0.62 -7.53 16 13 C 0.58 14.45 7.86 -12.77 -0.10 14.35 16 14 O -0.55 -15.22 16.66 5.07 0.08 -15.14 16 15 N -0.58 -12.38 6.12 30.33 0.19 -12.19 16 16 N -0.28 -5.64 11.18 32.50 0.36 -5.28 16 17 C 0.14 2.23 6.76 -84.39 -0.57 1.66 16 18 C -0.25 -3.06 9.44 -39.22 -0.37 -3.43 16 19 C 0.12 0.96 11.18 -16.84 -0.19 0.77 16 20 N -0.62 -3.44 5.28 -12.92 -0.07 -3.51 16 21 H 0.41 0.66 8.90 -40.82 -0.36 0.29 16 22 C 0.10 0.68 11.18 -16.84 -0.19 0.49 16 23 C -0.17 -1.95 10.03 -39.23 -0.39 -2.34 16 24 C -0.06 -1.47 9.47 -39.57 -0.37 -1.85 16 25 C -0.18 -4.38 8.61 -39.36 -0.34 -4.72 16 26 H 0.29 6.20 8.30 -40.82 -0.34 5.86 16 27 H 0.10 2.30 8.06 -52.48 -0.42 1.88 16 28 H 0.10 2.48 7.63 -52.49 -0.40 2.08 16 29 H 0.38 6.99 4.49 -182.59 -0.82 6.17 16 30 H 0.13 1.64 6.22 -52.49 -0.33 1.32 16 31 H 0.16 0.64 8.06 -52.48 -0.42 0.22 16 32 H 0.16 0.45 8.06 -52.48 -0.42 0.03 16 33 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.09 1.70 6.37 -52.48 -0.33 1.37 16 35 H 0.12 3.01 6.17 -52.49 -0.32 2.69 16 LS Contribution 308.67 15.07 4.65 4.65 Total: -1.00 -35.01 308.67 -7.94 -42.95 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -3.81 Total: 10.91 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -4.93 Total: -16.63 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 1.09 Total: -39.11 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: 0.08 Total: -15.14 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.03 Total: 12.38 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -35.01 -7.94 -42.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780762533.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.910 kcal (2) G-P(sol) polarization free energy of solvation -35.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds