Wall clock time and date at job start Tue Mar 31 2020 05:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31194 * 1 3 3 Si 1.86800 * 119.99909 * 2 1 4 4 H 1.48501 * 109.46966 * 270.00405 * 3 2 1 5 5 H 1.48508 * 109.46905 * 29.99949 * 3 2 1 6 6 H 1.48495 * 109.47234 * 149.99884 * 3 2 1 7 7 C 1.39298 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99626 * 198.19106 * 7 2 1 9 9 C 1.40961 * 120.00341 * 18.20478 * 7 2 1 10 10 C 1.40949 * 120.06869 * 204.89189 * 9 7 2 11 11 C 1.36005 * 119.93524 * 180.02562 * 10 9 7 12 12 C 1.40395 * 120.06636 * 359.97438 * 11 10 9 13 13 C 1.46864 * 119.93377 * 180.02562 * 12 11 10 14 14 O 1.21837 * 119.99827 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00375 * 179.97438 * 13 12 11 16 16 N 1.40094 * 120.00548 * 179.97438 * 15 13 12 17 17 C 1.32934 * 120.00433 * 180.02562 * 16 15 13 18 18 C 1.42144 * 120.70053 * 359.72489 * 17 16 15 19 19 C 1.35028 * 119.20277 * 179.71586 * 18 17 16 20 20 N 1.36016 * 120.73316 * 0.56924 * 19 18 17 21 21 H 0.97001 * 119.23398 * 179.72423 * 20 19 18 22 22 C 1.36022 * 121.52967 * 359.70529 * 20 19 18 23 23 C 1.35022 * 120.73085 * 359.97438 * 22 20 19 24 24 C 1.40397 * 120.13254 * 0.27562 * 12 11 10 25 25 C 1.36002 * 120.06625 * 359.44796 * 24 12 11 26 26 H 0.96997 * 120.00134 * 359.97438 * 1 2 3 27 27 H 1.08006 * 120.03272 * 359.97438 * 10 9 7 28 28 H 1.08002 * 119.96564 * 179.97438 * 11 10 9 29 29 H 0.97010 * 119.99699 * 0.02562 * 15 13 12 30 30 H 1.08001 * 120.40101 * 359.97438 * 18 17 16 31 31 H 1.08003 * 119.63332 * 180.29415 * 19 18 17 32 32 H 1.08003 * 119.63132 * 180.02562 * 22 20 19 33 33 H 1.07994 * 120.39840 * 180.02562 * 23 22 20 34 34 H 1.08003 * 119.96448 * 179.70121 * 24 12 11 35 35 H 1.08001 * 120.03319 * 180.27239 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3119 0.0000 0.0000 3 14 2.2459 1.6178 0.0000 4 1 2.4933 2.0465 -1.4001 5 1 1.4433 2.6527 0.7001 6 1 3.5434 1.4402 0.7000 7 6 2.0084 -1.2064 0.0005 8 1 3.0479 -1.2296 0.2926 9 6 1.3566 -2.3968 -0.3803 10 6 1.8254 -3.6401 0.0898 11 6 1.1947 -4.7870 -0.2798 12 6 0.0774 -4.7333 -1.1282 13 6 -0.6018 -5.9736 -1.5250 14 8 -0.1957 -7.0476 -1.1176 15 7 -1.6747 -5.9236 -2.3390 16 7 -2.3223 -7.1067 -2.7180 17 6 -3.3803 -7.0575 -3.5213 18 6 -3.8708 -5.8121 -3.9999 19 6 -4.9441 -5.7977 -4.8190 20 7 -5.5609 -6.9559 -5.1770 21 1 -6.3328 -6.9199 -5.7634 22 6 -5.1203 -8.1634 -4.7321 23 6 -4.0484 -8.2486 -3.9155 24 6 -0.3888 -3.4968 -1.6024 25 6 0.2344 -2.3461 -1.2317 26 1 -0.4850 0.8400 0.0004 27 1 2.6851 -3.6821 0.7422 28 1 1.5537 -5.7400 0.0798 29 1 -1.9982 -5.0684 -2.6632 30 1 -3.3883 -4.8888 -3.7151 31 1 -5.3197 -4.8557 -5.1906 32 1 -5.6331 -9.0640 -5.0360 33 1 -3.7029 -9.2102 -3.5658 34 1 -1.2456 -3.4590 -2.2588 35 1 -0.1274 -1.3949 -1.5932 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780762533.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:41 Heat of formation + Delta-G solvation = 33.903037 kcal Electronic energy + Delta-G solvation = -20223.152306 eV Core-core repulsion = 16993.005157 eV Total energy + Delta-G solvation = -3230.147149 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.17022 -40.50126 -38.86208 -36.96843 -35.66718 -33.92547 -32.43500 -32.00191 -31.36719 -29.79563 -27.60142 -24.56822 -23.98264 -23.07216 -22.61693 -21.18426 -19.98477 -19.39304 -18.94869 -17.94935 -17.21213 -16.83696 -16.01783 -15.89355 -15.81567 -15.77072 -15.06955 -15.04552 -14.63789 -14.53034 -14.03641 -13.79295 -13.56215 -13.30606 -13.05949 -12.86211 -12.74935 -12.61265 -12.39153 -11.77264 -11.41668 -11.12736 -10.79034 -10.69387 -10.59382 -10.51201 -9.65267 -9.46860 -8.81224 -7.89508 -6.51148 0.23805 0.56635 0.62227 1.12145 1.39650 1.44964 1.54818 2.02963 2.13322 2.18126 2.28952 2.70223 2.92283 3.65863 3.92153 3.96837 4.17818 4.22487 4.36067 4.40527 4.43863 4.50973 4.86907 4.91476 5.00919 5.10527 5.24527 5.28097 5.34558 5.53313 5.59399 5.77971 5.90652 5.95631 6.04900 6.17910 6.49152 6.50005 6.56817 6.74164 6.83875 7.00131 7.86003 8.14813 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.025205 B = 0.003370 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.603533 B = 8307.176297 C = 9337.593896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.035 3.965 3 Si 0.993 3.007 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.257 1.257 7 C -0.464 4.464 8 H 0.089 0.911 9 C 0.104 3.896 10 C -0.249 4.249 11 C -0.029 4.029 12 C -0.295 4.295 13 C 0.578 3.422 14 O -0.600 6.600 15 N -0.573 5.573 16 N -0.388 5.388 17 C 0.167 3.833 18 C -0.310 4.310 19 C 0.177 3.823 20 N -0.587 5.587 21 H 0.444 0.556 22 C 0.158 3.842 23 C -0.231 4.231 24 C -0.055 4.055 25 C -0.191 4.191 26 H 0.297 0.703 27 H 0.110 0.890 28 H 0.101 0.899 29 H 0.382 0.618 30 H 0.120 0.880 31 H 0.209 0.791 32 H 0.219 0.781 33 H 0.135 0.865 34 H 0.115 0.885 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.927 -3.474 -14.709 22.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.184 4.184 3 Si 0.812 3.188 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.181 1.181 7 C -0.491 4.491 8 H 0.107 0.893 9 C 0.101 3.899 10 C -0.268 4.268 11 C -0.048 4.048 12 C -0.301 4.301 13 C 0.372 3.628 14 O -0.484 6.484 15 N -0.313 5.313 16 N -0.204 5.204 17 C -0.005 4.005 18 C -0.339 4.339 19 C 0.046 3.954 20 N -0.196 5.196 21 H 0.284 0.716 22 C 0.029 3.971 23 C -0.259 4.259 24 C -0.074 4.074 25 C -0.210 4.210 26 H 0.108 0.892 27 H 0.128 0.872 28 H 0.119 0.881 29 H 0.223 0.777 30 H 0.138 0.862 31 H 0.226 0.774 32 H 0.236 0.764 33 H 0.153 0.847 34 H 0.133 0.867 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -16.170 -4.576 -13.827 21.762 hybrid contribution -0.058 1.521 -0.133 1.528 sum -16.228 -3.055 -13.959 21.623 Atomic orbital electron populations 1.70018 1.09071 1.31615 1.31722 1.26887 0.95635 1.05025 0.90804 0.85029 0.78975 0.74900 0.79861 1.18234 1.18888 1.18076 1.19950 0.99078 0.92227 1.37827 0.89274 1.18157 0.91037 0.92943 0.87799 1.20820 1.05333 0.92492 1.08171 1.20490 0.93135 0.97344 0.93836 1.19062 1.05035 0.91373 1.14619 1.18246 0.78550 0.89071 0.76930 1.90616 1.67119 1.32786 1.57850 1.46295 1.29902 1.06153 1.48935 1.76392 1.13725 1.07231 1.23093 1.20388 0.91975 0.95548 0.92574 1.21115 1.04838 0.97532 1.10428 1.22109 0.90368 0.91828 0.91103 1.41356 1.30209 1.03745 1.44252 0.71594 1.22223 0.93097 0.90272 0.91532 1.20441 1.00880 0.96774 1.07771 1.20673 0.97718 0.91602 0.97401 1.20933 1.00525 0.97124 1.02467 0.89185 0.87164 0.88056 0.77725 0.86216 0.77444 0.76409 0.84722 0.86701 0.86345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.78 10.98 21.72 0.24 -38.54 16 2 C 0.03 1.63 5.11 85.04 0.43 2.06 16 3 Si 0.99 35.01 29.59 68.60 2.03 37.04 16 4 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 5 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 6 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 7 C -0.46 -23.79 8.99 23.19 0.21 -23.59 16 8 H 0.09 4.36 7.90 -2.91 -0.02 4.33 16 9 C 0.10 5.61 5.57 -21.28 -0.12 5.49 16 10 C -0.25 -13.06 9.72 22.41 0.22 -12.85 16 11 C -0.03 -1.52 9.52 22.28 0.21 -1.31 16 12 C -0.30 -15.52 5.89 -19.97 -0.12 -15.64 16 13 C 0.58 31.02 7.86 86.50 0.68 31.70 16 14 O -0.60 -36.34 16.66 -4.79 -0.08 -36.42 16 15 N -0.57 -26.41 6.12 -176.12 -1.08 -27.49 16 16 N -0.39 -17.23 11.18 -51.09 -0.57 -17.80 16 17 C 0.17 5.30 6.76 40.92 0.28 5.57 16 18 C -0.31 -7.25 9.44 22.50 0.21 -7.04 16 19 C 0.18 1.72 11.18 83.31 0.93 2.65 16 20 N -0.59 -2.22 5.28 -194.78 -1.03 -3.24 16 21 H 0.44 -2.64 8.90 -92.71 -0.83 -3.46 16 22 C 0.16 1.25 11.18 83.30 0.93 2.18 16 23 C -0.23 -5.02 10.03 22.50 0.23 -4.79 16 24 C -0.05 -2.67 9.47 22.28 0.21 -2.46 16 25 C -0.19 -9.93 8.61 22.42 0.19 -9.73 16 26 H 0.30 12.72 8.30 -92.71 -0.77 11.95 16 27 H 0.11 5.36 8.06 -2.91 -0.02 5.33 16 28 H 0.10 5.30 7.63 -2.91 -0.02 5.28 16 29 H 0.38 15.24 4.49 -213.31 -0.96 14.28 16 30 H 0.12 3.04 6.22 -2.91 -0.02 3.02 16 31 H 0.21 0.09 8.06 -2.91 -0.02 0.07 16 32 H 0.22 -0.61 8.06 -2.91 -0.02 -0.63 16 33 H 0.13 3.09 8.06 -2.91 -0.02 3.06 16 34 H 0.12 4.74 6.37 -2.91 -0.02 4.72 16 35 H 0.12 6.09 6.17 -2.91 -0.02 6.07 16 Total: -1.00 -87.93 308.67 3.38 -84.55 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: -0.63 Total: 29.65 kcal Atomic # 6 Polarization: -32.24 SS G_CDS: 4.50 Total: -27.74 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -2.44 Total: -87.07 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: -0.08 Total: -36.42 kcal Atomic # 14 Polarization: 35.01 SS G_CDS: 2.03 Total: 37.04 kcal Total: -87.93 3.38 -84.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780762533.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.452 kcal (2) G-P(sol) polarization free energy of solvation -87.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds