Wall clock time and date at job start Tue Mar 31 2020 05:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00132 * 2 1 4 4 H 1.48494 * 109.47237 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46695 * 299.99405 * 3 2 1 6 6 H 1.48494 * 109.47363 * 59.99176 * 3 2 1 7 7 C 1.37881 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99752 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00103 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.46943 * 180.02562 * 11 10 9 13 13 C 1.38269 * 119.93868 * 269.72216 * 12 11 10 14 14 C 1.38152 * 120.05179 * 179.72637 * 13 12 11 15 15 C 1.38727 * 119.94296 * 0.56879 * 14 13 12 16 16 O 1.35895 * 120.05721 * 179.68219 * 15 14 13 17 17 C 1.42901 * 117.00261 * 0.02562 * 16 15 14 18 18 C 1.53000 * 109.47699 * 179.97438 * 17 16 15 19 19 C 1.53002 * 109.47178 * 179.97438 * 18 17 16 20 20 Cl 1.80304 * 109.46945 * 180.02562 * 19 18 17 21 21 C 1.38736 * 119.89155 * 359.71002 * 15 14 13 22 22 C 1.38150 * 119.94112 * 359.97438 * 21 15 14 23 23 H 0.96997 * 120.00392 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47558 * 59.99825 * 9 7 2 25 25 H 1.08998 * 109.47216 * 299.99488 * 9 7 2 26 26 H 1.00901 * 110.99869 * 56.04737 * 10 9 7 27 27 H 1.09004 * 109.47031 * 299.99620 * 11 10 9 28 28 H 1.08995 * 109.47111 * 59.99900 * 11 10 9 29 29 H 1.07995 * 119.97476 * 359.97438 * 13 12 11 30 30 H 1.08002 * 120.02819 * 180.25313 * 14 13 12 31 31 H 1.09002 * 109.46904 * 300.00337 * 17 16 15 32 32 H 1.09005 * 109.46939 * 59.99811 * 17 16 15 33 33 H 1.08993 * 109.47213 * 299.99999 * 18 17 16 34 34 H 1.09005 * 109.46995 * 59.99948 * 18 17 16 35 35 H 1.09002 * 109.47168 * 300.00283 * 19 18 17 36 36 H 1.09002 * 109.46777 * 59.99788 * 19 18 17 37 37 H 1.08001 * 120.03230 * 179.97438 * 21 15 14 38 38 H 1.08000 * 119.97145 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2127 6 1 1.8903 2.3965 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5053 -4.9071 -0.0001 12 6 2.5148 -6.0260 0.0006 13 6 2.9736 -6.5421 -1.1973 14 6 3.9033 -7.5640 -1.1995 15 6 4.3676 -8.0803 0.0016 16 8 5.2772 -9.0899 0.0021 17 6 5.7128 -9.5715 -1.2708 18 6 6.7284 -10.6980 -1.0698 19 6 7.1942 -11.2140 -2.4328 20 17 8.3904 -12.5420 -2.1958 21 6 3.9013 -7.5646 1.2021 22 6 2.9765 -6.5382 1.1989 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5572 -0.8896 25 1 0.6240 -2.5568 0.8903 26 1 2.8405 -3.5487 0.7819 27 1 0.8801 -4.9818 0.8897 28 1 0.8807 -4.9813 -0.8902 29 1 2.6079 -6.1434 -2.1320 30 1 4.2644 -7.9641 -2.1354 31 1 4.8561 -9.9494 -1.8288 32 1 6.1785 -8.7579 -1.8271 33 1 7.5850 -10.3197 -0.5121 34 1 6.2631 -11.5116 -0.5133 35 1 6.3373 -11.5924 -2.9902 36 1 7.6593 -10.4005 -2.9896 37 1 4.2609 -7.9650 2.1385 38 1 2.6135 -6.1361 2.1332 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811496677.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:38 Heat of formation + Delta-G solvation = -40.066786 kcal Electronic energy + Delta-G solvation = -18536.051090 eV Core-core repulsion = 15403.803862 eV Total energy + Delta-G solvation = -3132.247228 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.21413 -38.01084 -36.64680 -35.14320 -33.87897 -32.50895 -30.95548 -30.19865 -27.20717 -26.37224 -23.99751 -23.17679 -21.72775 -21.48688 -20.74867 -18.29030 -16.78040 -16.57737 -16.24458 -15.36048 -15.06959 -14.70933 -14.66245 -14.47026 -13.99144 -13.53754 -13.46610 -13.28502 -13.22911 -12.90513 -12.47522 -11.88491 -11.85743 -11.60816 -11.35342 -11.11693 -11.01146 -10.92929 -10.84575 -10.71978 -10.66190 -10.58524 -9.93887 -9.19505 -8.90967 -8.50069 -8.04448 -7.30112 -6.04518 -4.06411 1.43286 1.52330 1.66854 2.98840 3.30365 3.37588 3.43047 3.84797 4.21008 4.34010 4.43029 4.44497 4.68637 4.78306 4.81769 4.94453 4.96715 5.13809 5.31466 5.36983 5.38818 5.49983 5.54354 5.62141 5.73432 5.92160 6.18720 6.19633 6.35376 6.45373 6.82413 6.86727 7.22259 7.35682 7.39856 7.77366 8.10671 8.37323 8.58867 9.03211 9.58595 11.06575 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.033641 B = 0.002179 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.123675 B =12845.454449 C =13253.807765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.192 3.808 10 N -0.685 5.685 11 C 0.097 3.903 12 C -0.100 4.100 13 C -0.060 4.060 14 C -0.209 4.209 15 C 0.116 3.884 16 O -0.316 6.316 17 C 0.061 3.939 18 C -0.131 4.131 19 C -0.030 4.030 20 Cl -0.179 7.179 21 C -0.151 4.151 22 C -0.077 4.077 23 H 0.261 0.739 24 H 0.028 0.972 25 H -0.013 1.013 26 H 0.330 0.670 27 H 0.028 0.972 28 H 0.072 0.928 29 H 0.126 0.874 30 H 0.123 0.877 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.127 0.873 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.350 -23.414 -3.117 26.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.315 5.315 11 C -0.033 4.033 12 C -0.100 4.100 13 C -0.079 4.079 14 C -0.227 4.227 15 C 0.071 3.929 16 O -0.231 6.231 17 C -0.015 4.015 18 C -0.169 4.169 19 C -0.093 4.093 20 Cl -0.152 7.152 21 C -0.169 4.169 22 C -0.096 4.096 23 H 0.070 0.930 24 H 0.046 0.954 25 H 0.005 0.995 26 H 0.146 0.854 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.144 0.856 30 H 0.141 0.859 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.145 0.855 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.443 -23.468 -3.637 26.361 hybrid contribution 0.035 0.945 0.622 1.132 sum 11.478 -22.523 -3.015 25.458 Atomic orbital electron populations 1.69969 1.06076 1.26700 1.51000 1.24998 0.94895 0.99404 0.95355 0.86419 0.80076 0.83287 0.77503 1.19644 1.20988 1.21089 1.21225 0.93587 0.90187 1.50199 0.91883 1.19593 0.90620 0.87340 0.95857 1.60736 1.21053 1.00608 1.49109 1.20835 0.93253 0.88610 1.00561 1.19981 0.99587 0.97739 0.92730 1.20868 0.94796 0.93963 0.98269 1.21171 1.03125 1.01902 0.96531 1.18902 0.90611 0.88987 0.94379 1.85997 1.56896 1.49362 1.30801 1.22613 0.97352 0.96405 0.85085 1.21795 0.99838 0.98451 0.96770 1.24152 0.94434 0.91858 0.98840 1.98736 1.63491 1.55099 1.97895 1.20336 1.00944 0.99692 0.95966 1.20917 0.95615 0.94899 0.98133 0.92957 0.95353 0.99502 0.85381 0.95431 0.90984 0.85559 0.85926 0.91772 0.91657 0.89447 0.89522 0.88470 0.88405 0.85548 0.85512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.82 13.29 55.43 0.74 -26.09 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 7 C -0.51 -14.61 9.32 -34.44 -0.32 -14.93 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.19 5.04 5.44 -4.97 -0.03 5.02 16 10 N -0.68 -14.74 6.48 -116.34 -0.75 -15.50 16 11 C 0.10 1.71 5.81 -4.98 -0.03 1.68 16 12 C -0.10 -1.52 5.39 -104.60 -0.56 -2.08 16 13 C -0.06 -0.84 9.69 -39.60 -0.38 -1.23 16 14 C -0.21 -2.55 9.04 -39.43 -0.36 -2.91 16 15 C 0.12 1.46 6.69 -39.22 -0.26 1.20 16 16 O -0.32 -3.54 10.14 -19.41 -0.20 -3.73 16 17 C 0.06 0.45 4.74 37.16 0.18 0.63 16 18 C -0.13 -0.77 5.71 -26.73 -0.15 -0.92 16 19 C -0.03 -0.14 6.66 37.16 0.25 0.11 16 20 Cl -0.18 -1.25 29.15 -51.86 -1.51 -2.77 16 21 C -0.15 -1.94 9.99 -39.43 -0.39 -2.33 16 22 C -0.08 -1.06 9.69 -39.61 -0.38 -1.44 16 23 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 24 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 25 H -0.01 -0.35 8.14 -51.93 -0.42 -0.78 16 26 H 0.33 6.87 8.72 -39.29 -0.34 6.53 16 27 H 0.03 0.48 8.08 -51.93 -0.42 0.06 16 28 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 29 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.12 1.18 6.30 -52.49 -0.33 0.85 16 31 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 32 H 0.07 0.44 7.66 -51.93 -0.40 0.04 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 339.18 15.07 5.11 5.11 Total: -1.00 -31.23 339.18 -9.84 -41.07 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -5.66 Total: 0.94 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -2.55 Total: -15.74 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: -0.02 Total: -41.58 kcal Atomic # 8 Polarization: -3.54 SS G_CDS: -0.20 Total: -3.73 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -1.51 Total: -2.77 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.23 -9.84 -41.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811496677.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.001 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds