Wall clock time and date at job start Tue Mar 31 2020 05:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00132 * 2 1 4 4 H 1.48494 * 109.47237 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46695 * 299.99405 * 3 2 1 6 6 H 1.48494 * 109.47363 * 59.99176 * 3 2 1 7 7 C 1.37881 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99752 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00103 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.46943 * 180.02562 * 11 10 9 13 13 C 1.38269 * 119.93868 * 269.72216 * 12 11 10 14 14 C 1.38152 * 120.05179 * 179.72637 * 13 12 11 15 15 C 1.38727 * 119.94296 * 0.56879 * 14 13 12 16 16 O 1.35895 * 120.05721 * 179.68219 * 15 14 13 17 17 C 1.42901 * 117.00261 * 0.02562 * 16 15 14 18 18 C 1.53000 * 109.47699 * 179.97438 * 17 16 15 19 19 C 1.53002 * 109.47178 * 179.97438 * 18 17 16 20 20 Cl 1.80304 * 109.46945 * 180.02562 * 19 18 17 21 21 C 1.38736 * 119.89155 * 359.71002 * 15 14 13 22 22 C 1.38150 * 119.94112 * 359.97438 * 21 15 14 23 23 H 0.96997 * 120.00392 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47558 * 59.99825 * 9 7 2 25 25 H 1.08998 * 109.47216 * 299.99488 * 9 7 2 26 26 H 1.00901 * 110.99869 * 56.04737 * 10 9 7 27 27 H 1.09004 * 109.47031 * 299.99620 * 11 10 9 28 28 H 1.08995 * 109.47111 * 59.99900 * 11 10 9 29 29 H 1.07995 * 119.97476 * 359.97438 * 13 12 11 30 30 H 1.08002 * 120.02819 * 180.25313 * 14 13 12 31 31 H 1.09002 * 109.46904 * 300.00337 * 17 16 15 32 32 H 1.09005 * 109.46939 * 59.99811 * 17 16 15 33 33 H 1.08993 * 109.47213 * 299.99999 * 18 17 16 34 34 H 1.09005 * 109.46995 * 59.99948 * 18 17 16 35 35 H 1.09002 * 109.47168 * 300.00283 * 19 18 17 36 36 H 1.09002 * 109.46777 * 59.99788 * 19 18 17 37 37 H 1.08001 * 120.03230 * 179.97438 * 21 15 14 38 38 H 1.08000 * 119.97145 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2127 6 1 1.8903 2.3965 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5053 -4.9071 -0.0001 12 6 2.5148 -6.0260 0.0006 13 6 2.9736 -6.5421 -1.1973 14 6 3.9033 -7.5640 -1.1995 15 6 4.3676 -8.0803 0.0016 16 8 5.2772 -9.0899 0.0021 17 6 5.7128 -9.5715 -1.2708 18 6 6.7284 -10.6980 -1.0698 19 6 7.1942 -11.2140 -2.4328 20 17 8.3904 -12.5420 -2.1958 21 6 3.9013 -7.5646 1.2021 22 6 2.9765 -6.5382 1.1989 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5572 -0.8896 25 1 0.6240 -2.5568 0.8903 26 1 2.8405 -3.5487 0.7819 27 1 0.8801 -4.9818 0.8897 28 1 0.8807 -4.9813 -0.8902 29 1 2.6079 -6.1434 -2.1320 30 1 4.2644 -7.9641 -2.1354 31 1 4.8561 -9.9494 -1.8288 32 1 6.1785 -8.7579 -1.8271 33 1 7.5850 -10.3197 -0.5121 34 1 6.2631 -11.5116 -0.5133 35 1 6.3373 -11.5924 -2.9902 36 1 7.6593 -10.4005 -2.9896 37 1 4.2609 -7.9650 2.1385 38 1 2.6135 -6.1361 2.1332 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811496677.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:37 Heat of formation + Delta-G solvation = -58.683303 kcal Electronic energy + Delta-G solvation = -18536.858363 eV Core-core repulsion = 15403.803862 eV Total energy + Delta-G solvation = -3133.054501 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.108 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.13678 -39.01271 -37.16398 -36.75238 -34.73316 -34.27600 -31.95851 -31.56545 -28.69620 -27.34935 -25.51733 -23.98826 -23.44059 -22.45153 -21.83583 -19.17516 -18.62820 -17.36941 -17.17109 -16.92107 -16.39734 -15.89083 -15.63576 -15.35270 -15.22612 -15.05845 -14.55929 -14.29230 -14.00706 -13.99404 -13.70375 -13.42354 -13.04686 -12.91079 -12.66032 -12.53217 -12.42257 -12.27493 -11.93983 -11.64741 -11.63177 -11.50045 -11.29096 -11.27405 -10.67387 -9.92329 -9.21876 -8.98112 -8.22818 -6.34105 0.41666 0.46166 1.24111 1.41493 1.41944 1.56146 2.26549 2.40037 2.78807 3.10272 3.74589 3.80440 3.80710 3.87152 3.96621 4.02407 4.06015 4.26811 4.32011 4.36098 4.45943 4.50927 4.63142 4.75089 4.81235 4.92188 5.07212 5.08584 5.13530 5.24314 5.32523 5.41518 5.60697 5.76435 5.81561 6.01357 6.42592 6.47104 6.70097 6.87902 7.36794 8.88691 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.033641 B = 0.002179 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.123675 B =12845.454449 C =13253.807765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.974 3.026 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.535 4.535 8 H 0.063 0.937 9 C 0.206 3.794 10 N -0.683 5.683 11 C 0.101 3.899 12 C -0.121 4.121 13 C -0.069 4.069 14 C -0.205 4.205 15 C 0.119 3.881 16 O -0.326 6.326 17 C 0.053 3.947 18 C -0.124 4.124 19 C -0.024 4.024 20 Cl -0.201 7.201 21 C -0.158 4.158 22 C -0.080 4.080 23 H 0.265 0.735 24 H 0.002 0.998 25 H -0.037 1.037 26 H 0.334 0.666 27 H 0.028 0.972 28 H 0.067 0.933 29 H 0.129 0.871 30 H 0.152 0.848 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.142 0.858 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.919 -23.942 -3.673 27.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.079 3.921 10 N -0.313 5.313 11 C -0.027 4.027 12 C -0.122 4.122 13 C -0.088 4.088 14 C -0.223 4.223 15 C 0.074 3.926 16 O -0.241 6.241 17 C -0.022 4.022 18 C -0.162 4.162 19 C -0.086 4.086 20 Cl -0.175 7.175 21 C -0.176 4.176 22 C -0.098 4.098 23 H 0.074 0.926 24 H 0.020 0.980 25 H -0.019 1.019 26 H 0.151 0.849 27 H 0.046 0.954 28 H 0.086 0.914 29 H 0.147 0.853 30 H 0.169 0.831 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.160 0.840 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 13.027 -24.027 -4.194 27.651 hybrid contribution -0.436 0.985 0.780 1.330 sum 12.591 -23.043 -3.414 26.479 Atomic orbital electron populations 1.70090 1.07759 1.27971 1.51524 1.25962 0.95826 1.03401 0.94591 0.85263 0.78879 0.78233 0.77784 1.18743 1.20317 1.20265 1.21567 0.93790 0.91429 1.50570 0.91848 1.19247 0.90658 0.88796 0.93418 1.60613 1.20336 1.01043 1.49342 1.20793 0.93930 0.87718 1.00300 1.19767 1.00407 0.97915 0.94066 1.20985 0.95309 0.94598 0.97877 1.21400 1.02164 1.01008 0.97763 1.19036 0.90311 0.88910 0.94361 1.85998 1.56275 1.48689 1.33101 1.22898 0.98311 0.97111 0.83883 1.21725 0.99157 0.97819 0.97498 1.24271 0.94546 0.91549 0.98254 1.98739 1.64485 1.56288 1.97959 1.20539 1.00649 0.99404 0.97057 1.20999 0.95765 0.95168 0.97908 0.92582 0.97959 1.01913 0.84895 0.95426 0.91447 0.85347 0.83073 0.90190 0.90573 0.90152 0.89936 0.86745 0.86950 0.84038 0.84847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.50 13.29 21.45 0.28 -56.22 16 2 C 0.00 0.02 5.46 84.66 0.46 0.48 16 3 Si 0.97 44.44 29.54 68.60 2.03 46.47 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 6 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 7 C -0.54 -30.85 9.32 25.60 0.24 -30.62 16 8 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 9 C 0.21 11.18 5.44 85.55 0.47 11.65 16 10 N -0.68 -29.96 6.48 -521.98 -3.38 -33.34 16 11 C 0.10 3.66 5.81 85.56 0.50 4.16 16 12 C -0.12 -3.64 5.39 -19.85 -0.11 -3.75 16 13 C -0.07 -1.86 9.69 22.26 0.22 -1.64 16 14 C -0.20 -4.54 9.04 22.37 0.20 -4.34 16 15 C 0.12 2.75 6.69 22.51 0.15 2.90 16 16 O -0.33 -6.51 10.14 -92.37 -0.94 -7.44 16 17 C 0.05 0.63 4.74 71.98 0.34 0.97 16 18 C -0.12 -1.19 5.71 30.59 0.17 -1.01 16 19 C -0.02 -0.16 6.66 71.98 0.48 0.32 16 20 Cl -0.20 -2.54 29.15 -2.72 -0.08 -2.62 16 21 C -0.16 -3.82 9.99 22.37 0.22 -3.60 16 22 C -0.08 -2.14 9.69 22.25 0.22 -1.92 16 23 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 24 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 25 H -0.04 -2.13 8.14 -2.39 -0.02 -2.14 16 26 H 0.33 14.09 8.72 -89.69 -0.78 13.31 16 27 H 0.03 0.99 8.08 -2.39 -0.02 0.97 16 28 H 0.07 2.45 8.08 -2.39 -0.02 2.43 16 29 H 0.13 3.31 8.06 -2.91 -0.02 3.29 16 30 H 0.15 2.38 6.30 -2.91 -0.02 2.36 16 31 H 0.08 0.73 7.66 -2.39 -0.02 0.71 16 32 H 0.08 0.77 7.66 -2.38 -0.02 0.75 16 33 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 38 H 0.13 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -67.02 339.18 1.74 -65.28 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.27 Total: 14.26 kcal Atomic # 6 Polarization: -29.94 SS G_CDS: 3.56 Total: -26.39 kcal Atomic # 7 Polarization: -86.46 SS G_CDS: -3.10 Total: -89.56 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.94 Total: -7.44 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 17 Polarization: -2.54 SS G_CDS: -0.08 Total: -2.62 kcal Total: -67.02 1.74 -65.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811496677.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.596 kcal (2) G-P(sol) polarization free energy of solvation -67.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds