Wall clock time and date at job start Tue Mar 31 2020 05:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00118 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00179 * 3 2 1 6 6 H 1.48498 * 109.46997 * 149.99989 * 3 2 1 7 7 C 1.37885 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99908 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46946 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46891 * 180.02562 * 10 9 7 12 12 N 1.46906 * 109.47053 * 179.97438 * 11 10 9 13 13 C 1.46895 * 110.99789 * 179.97438 * 12 11 10 14 14 C 1.53004 * 109.47035 * 179.97438 * 13 12 11 15 15 H 1.09005 * 109.47157 * 59.99991 * 14 13 12 16 16 O 1.42901 * 109.47147 * 300.00445 * 14 13 12 17 17 C 1.50692 * 109.47453 * 180.02562 * 14 13 12 18 18 C 1.38240 * 119.98774 * 84.72259 * 17 14 13 19 19 C 1.38213 * 120.01399 * 179.72544 * 18 17 14 20 20 C 1.38351 * 119.98848 * 0.55594 * 19 18 17 21 21 Cl 1.73602 * 120.01732 * 179.70309 * 20 19 18 22 22 C 1.38352 * 119.96902 * 359.71959 * 20 19 18 23 23 C 1.38212 * 119.99030 * 0.02562 * 22 20 19 24 24 H 0.97007 * 119.99539 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46980 * 60.00263 * 9 7 2 26 26 H 1.09004 * 109.47113 * 300.00244 * 9 7 2 27 27 H 1.09001 * 109.47372 * 60.00128 * 10 9 7 28 28 H 1.09004 * 109.47108 * 299.99872 * 10 9 7 29 29 H 1.08992 * 109.47056 * 59.99654 * 11 10 9 30 30 H 1.09004 * 109.47006 * 299.99770 * 11 10 9 31 31 H 1.00899 * 110.99484 * 303.95475 * 12 11 10 32 32 H 1.08996 * 109.47424 * 299.99656 * 13 12 11 33 33 H 1.09002 * 109.47411 * 60.00282 * 13 12 11 34 34 H 0.96706 * 113.99785 * 299.99503 * 16 14 13 35 35 H 1.07998 * 119.99560 * 0.02562 * 18 17 14 36 36 H 1.08001 * 120.00843 * 180.27762 * 19 18 17 37 37 H 1.08005 * 120.00467 * 179.97438 * 22 20 19 38 38 H 1.08001 * 119.99475 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4799 -4.9871 -0.0012 12 7 2.4345 -6.1038 -0.0018 13 6 1.7341 -7.3950 -0.0018 14 6 2.7589 -8.5311 -0.0031 15 1 3.3845 -8.4571 0.8865 16 8 3.5773 -8.4330 -1.1704 17 6 2.0405 -9.8558 -0.0038 18 6 1.6138 -10.4098 -1.1963 19 6 0.9598 -11.6274 -1.1980 20 6 0.7221 -12.2864 -0.0050 21 17 -0.1061 -13.8121 -0.0057 22 6 1.1444 -11.7287 1.1887 23 6 1.8029 -10.5136 1.1887 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6245 -2.5571 0.8897 27 1 2.8717 -3.6045 0.8895 28 1 2.8717 -3.6044 -0.8906 29 1 0.8536 -5.0445 -0.8913 30 1 0.8530 -5.0451 0.8886 31 1 3.0693 -6.0363 -0.7832 32 1 1.1096 -7.4697 0.8884 33 1 1.1088 -7.4693 -0.8916 34 1 3.0859 -8.4911 -2.0013 35 1 1.7957 -9.8933 -2.1272 36 1 0.6304 -12.0623 -2.1301 37 1 0.9587 -12.2425 2.1204 38 1 2.1329 -10.0784 2.1204 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819016872.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:48 Heat of formation + Delta-G solvation = -53.518045 kcal Electronic energy + Delta-G solvation = -18694.380566 eV Core-core repulsion = 15561.550048 eV Total energy + Delta-G solvation = -3132.830518 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.17440 -37.89761 -36.70546 -35.74028 -33.44248 -32.07481 -31.44136 -30.99492 -28.00241 -25.71131 -23.45474 -23.20392 -22.07733 -21.40027 -20.08683 -18.11758 -16.72229 -16.51868 -16.32223 -15.73537 -15.35869 -14.69071 -14.53283 -14.35513 -14.14295 -13.89477 -13.71229 -13.35164 -12.69931 -12.58452 -12.12753 -12.01784 -11.89787 -11.61193 -11.46052 -11.27568 -11.15883 -10.83783 -10.61487 -10.57094 -10.33234 -9.69709 -9.47622 -9.34714 -9.07885 -8.94491 -8.33651 -8.22863 -5.98738 -4.00696 0.67318 0.85925 1.72859 3.14855 3.33128 3.39177 3.43222 4.00771 4.14908 4.32087 4.44497 4.47317 4.70354 4.82128 4.88894 4.95850 5.07151 5.23005 5.37091 5.46190 5.55122 5.64680 5.75718 5.78457 5.79437 5.90016 6.12905 6.30244 6.33763 6.70749 6.73923 7.13832 7.25450 7.32109 7.61384 7.69431 7.83979 8.01663 8.45030 9.06530 9.63225 11.12720 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.043771 B = 0.002180 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.535755 B =12840.980976 C =13104.866433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.059 3.941 12 N -0.687 5.687 13 C 0.033 3.967 14 C 0.148 3.852 15 H 0.119 0.881 16 O -0.549 6.549 17 C -0.107 4.107 18 C -0.100 4.100 19 C -0.107 4.107 20 C -0.037 4.037 21 Cl -0.073 7.073 22 C -0.108 4.108 23 C -0.095 4.095 24 H 0.260 0.740 25 H 0.013 0.987 26 H 0.016 0.984 27 H 0.056 0.944 28 H 0.045 0.955 29 H 0.023 0.977 30 H 0.066 0.934 31 H 0.345 0.655 32 H 0.081 0.919 33 H 0.030 0.970 34 H 0.370 0.630 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.505 -27.235 -1.054 27.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.069 4.069 12 N -0.319 5.319 13 C -0.097 4.097 14 C 0.089 3.911 15 H 0.137 0.863 16 O -0.355 6.355 17 C -0.108 4.108 18 C -0.118 4.118 19 C -0.126 4.126 20 C -0.063 4.063 21 Cl -0.044 7.044 22 C -0.126 4.126 23 C -0.114 4.114 24 H 0.070 0.930 25 H 0.032 0.968 26 H 0.034 0.966 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.163 0.837 32 H 0.099 0.901 33 H 0.048 0.952 34 H 0.218 0.782 35 H 0.148 0.852 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.831 -27.183 0.079 27.244 hybrid contribution -0.628 0.649 -1.307 1.588 sum 1.204 -26.534 -1.228 26.589 Atomic orbital electron populations 1.69970 1.06068 1.26549 1.51059 1.25042 0.94868 0.99304 0.95402 0.86583 0.79872 0.83420 0.78066 1.20704 1.21253 1.19836 1.21263 0.93084 0.91033 1.50291 0.92627 1.19069 0.94014 0.91410 0.97087 1.21625 0.99181 0.92858 1.00835 1.22146 0.94081 0.90831 0.99860 1.60462 1.20162 1.00703 1.50554 1.22593 0.95440 0.90197 1.01516 1.20964 0.91625 0.88465 0.90079 0.86301 1.86686 1.37271 1.95855 1.15642 1.20742 0.98631 0.97667 0.93724 1.20855 0.97701 0.95184 0.98074 1.21022 0.99322 0.95178 0.97053 1.20968 1.00646 0.89331 0.95389 1.98378 1.77180 1.29899 1.98952 1.21079 0.98518 0.96015 0.97030 1.21015 0.98030 0.94117 0.98189 0.93050 0.96844 0.96592 0.92478 0.93589 0.95828 0.91511 0.83694 0.90057 0.95174 0.78188 0.85201 0.84812 0.84726 0.84561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.23 5.41 -26.73 -0.14 -2.37 16 11 C 0.06 1.01 5.69 -3.82 -0.02 0.99 16 12 N -0.69 -9.72 6.50 -113.78 -0.74 -10.46 16 13 C 0.03 0.36 5.37 -3.82 -0.02 0.34 16 14 C 0.15 1.40 3.48 -27.88 -0.10 1.30 16 15 H 0.12 1.18 8.05 -51.93 -0.42 0.77 16 16 O -0.55 -5.40 12.47 -35.23 -0.44 -5.84 16 17 C -0.11 -0.91 5.00 -104.62 -0.52 -1.43 16 18 C -0.10 -0.77 9.33 -39.59 -0.37 -1.14 16 19 C -0.11 -0.84 9.83 -39.55 -0.39 -1.23 16 20 C -0.04 -0.31 6.32 -39.50 -0.25 -0.56 16 21 Cl -0.07 -0.59 28.96 -51.86 -1.50 -2.09 16 22 C -0.11 -0.85 9.83 -39.55 -0.39 -1.24 16 23 C -0.10 -0.76 9.68 -39.59 -0.38 -1.14 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.34 4.75 8.12 -39.29 -0.32 4.43 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.37 2.45 7.39 45.56 0.34 2.78 16 35 H 0.13 0.74 6.62 -52.49 -0.35 0.39 16 36 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 38 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 337.11 15.07 5.08 5.08 Total: -1.00 -31.54 337.11 -9.96 -41.50 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -4.94 Total: 1.18 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -3.14 Total: -19.75 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.00 Total: -36.92 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.44 Total: -5.84 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.54 -9.96 -41.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819016872.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.018 kcal (2) G-P(sol) polarization free energy of solvation -31.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds