Wall clock time and date at job start Tue Mar 31 2020 05:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34893 * 117.00008 * 2 1 4 4 O 1.21624 * 120.00028 * 359.97438 * 3 2 1 5 5 C 1.46394 * 120.00038 * 179.97438 * 3 2 1 6 6 C 1.36751 * 125.46360 * 179.97438 * 5 3 2 7 7 C 1.37418 * 113.29019 * 180.02562 * 6 5 3 8 8 C 1.50697 * 122.44520 * 179.97438 * 7 6 5 9 9 N 1.46905 * 109.47066 * 89.99844 * 8 7 6 10 10 C 1.46901 * 110.99870 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.46916 * 180.02562 * 10 9 8 12 12 C 1.52996 * 109.46700 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.46820 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00070 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00019 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99993 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 120.00130 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.47108 * 89.99504 * 17 15 13 19 19 H 1.48498 * 109.47097 * 209.99712 * 17 15 13 20 20 H 1.48499 * 109.46508 * 329.99366 * 17 15 13 21 21 C 1.33863 * 115.10808 * 0.24675 * 7 6 5 22 22 S 1.70613 * 110.96068 * 359.62205 * 21 7 6 23 23 H 1.08996 * 109.46900 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46917 * 300.00407 * 1 2 3 25 25 H 1.08996 * 109.46825 * 60.00837 * 1 2 3 26 26 H 1.08003 * 123.35644 * 0.05432 * 6 5 3 27 27 H 1.09001 * 109.47558 * 330.00007 * 8 7 6 28 28 H 1.08998 * 109.47216 * 209.99670 * 8 7 6 29 29 H 1.00901 * 110.99869 * 56.04737 * 9 8 7 30 30 H 1.09004 * 109.47031 * 299.99620 * 10 9 8 31 31 H 1.08995 * 109.47111 * 59.99900 * 10 9 8 32 32 H 1.08995 * 109.46615 * 299.99641 * 11 10 9 33 33 H 1.08996 * 109.46939 * 60.00272 * 11 10 9 34 34 H 1.08993 * 109.47740 * 299.99810 * 12 11 10 35 35 H 1.09005 * 109.47573 * 59.99976 * 12 11 10 36 36 H 0.96999 * 120.00009 * 180.02562 * 16 15 13 37 37 H 1.07996 * 124.51500 * 179.72526 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4020 2.2219 -0.0005 5 6 3.5263 1.2785 0.0006 6 6 4.2604 2.4323 0.0001 7 6 5.6170 2.2133 0.0003 8 6 6.6178 3.3399 -0.0007 9 7 6.9431 3.7071 1.3840 10 6 7.9179 4.8054 1.4222 11 6 8.2315 5.1586 2.8776 12 6 9.2473 6.3020 2.9173 13 6 9.5556 6.6503 4.3507 14 1 9.0755 6.1098 5.1531 15 6 10.4516 7.6582 4.6379 16 7 10.7203 7.9625 5.8888 17 14 11.2827 8.5925 3.2501 18 1 10.4565 9.7702 2.8819 19 1 12.6244 9.0484 3.6942 20 1 11.4279 7.7015 2.0710 21 6 5.9845 0.9261 -0.0044 22 16 4.6201 -0.0982 0.0012 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 3.8180 3.4176 0.0002 27 1 6.1939 4.2022 -0.5153 28 1 7.5245 3.0200 -0.5142 29 1 7.2778 2.9079 1.9010 30 1 8.8337 4.4960 0.9184 31 1 7.5025 5.6777 0.9176 32 1 7.3159 5.4678 3.3816 33 1 8.6471 4.2861 3.3817 34 1 10.1627 5.9925 2.4133 35 1 8.8321 7.1746 2.4130 36 1 11.3503 8.6718 6.0908 37 1 7.0082 0.5820 -0.0092 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894239277.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:41 Heat of formation + Delta-G solvation = -62.819285 kcal Electronic energy + Delta-G solvation = -18543.100625 eV Core-core repulsion = 15411.910481 eV Total energy + Delta-G solvation = -3131.190144 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.62378 -38.84799 -36.74734 -36.01072 -33.46735 -31.70958 -30.52275 -28.15949 -27.53948 -25.55266 -24.29396 -22.06150 -21.23081 -20.12878 -19.37665 -18.79382 -17.23800 -16.71527 -16.70161 -16.45332 -15.62136 -14.96296 -14.79617 -14.15003 -13.93647 -13.78167 -13.61348 -13.34570 -12.91878 -12.78909 -12.53280 -12.51830 -12.03353 -11.78146 -11.60729 -11.17959 -11.17483 -10.95125 -10.91641 -10.78678 -9.95669 -9.72966 -9.61659 -9.24858 -9.16029 -8.78098 -8.51924 -8.28161 -6.02145 -3.99906 0.07416 1.14564 1.57675 1.88483 2.30134 2.63365 3.31863 3.38869 3.42166 4.42646 4.46713 4.48202 4.69063 4.73755 4.77350 4.82310 5.07946 5.14427 5.27091 5.31610 5.43205 5.56083 5.67459 5.73885 5.89491 5.97432 6.13385 6.15905 6.53530 6.56374 6.92260 7.15176 7.34986 7.35611 7.43588 7.52437 7.82123 8.57031 9.03501 9.60340 11.11417 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.033139 B = 0.002461 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.716240 B =11373.878760 C =11676.220722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.358 6.358 3 C 0.542 3.458 4 O -0.497 6.497 5 C -0.274 4.274 6 C -0.014 4.014 7 C -0.111 4.111 8 C 0.115 3.885 9 N -0.686 5.686 10 C 0.057 3.943 11 C -0.100 4.100 12 C -0.013 4.013 13 C -0.519 4.519 14 H 0.072 0.928 15 C 0.064 3.936 16 N -0.904 5.904 17 Si 0.881 3.119 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.266 1.266 21 C -0.222 4.222 22 S 0.242 5.758 23 H 0.104 0.896 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.158 0.842 27 H 0.083 0.917 28 H 0.039 0.961 29 H 0.340 0.660 30 H 0.025 0.975 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.013 0.987 35 H 0.012 0.988 36 H 0.262 0.738 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.835 -19.811 -16.621 30.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.275 6.275 3 C 0.386 3.614 4 O -0.387 6.387 5 C -0.392 4.392 6 C -0.048 4.048 7 C -0.124 4.124 8 C -0.016 4.016 9 N -0.317 5.317 10 C -0.072 4.072 11 C -0.138 4.138 12 C -0.051 4.051 13 C -0.557 4.557 14 H 0.090 0.910 15 C -0.137 4.137 16 N -0.544 5.544 17 Si 0.709 3.291 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.191 1.191 21 C -0.361 4.361 22 S 0.512 5.488 23 H 0.122 0.878 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.175 0.825 27 H 0.101 0.899 28 H 0.058 0.942 29 H 0.158 0.842 30 H 0.043 0.957 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.031 0.969 35 H 0.030 0.970 36 H 0.072 0.928 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -16.697 -20.601 -16.444 31.202 hybrid contribution 1.438 1.755 -0.807 2.409 sum -15.259 -18.845 -17.251 29.759 Atomic orbital electron populations 1.23306 0.75455 1.03898 1.02874 1.86571 1.23975 1.32246 1.84741 1.19637 0.87128 0.81744 0.72932 1.90911 1.65944 1.35824 1.45973 1.23426 0.93925 0.98918 1.22899 1.20694 0.92036 0.98644 0.93447 1.18690 0.94335 0.94515 1.04906 1.20604 0.94916 0.94751 0.91325 1.60547 1.47608 1.12045 1.11501 1.22182 0.92062 0.93281 0.99661 1.21444 1.00194 0.99459 0.92660 1.19544 0.94070 0.93572 0.97906 1.21154 1.24965 1.18279 0.91275 0.91024 1.25056 0.96396 0.96840 0.95382 1.69922 1.35506 1.31181 1.17757 0.86756 0.78914 0.80447 0.83008 1.20287 1.21450 1.19114 1.25452 1.05220 0.97882 1.07535 1.83139 0.92636 1.06559 1.66443 0.87804 0.91582 0.91681 0.82484 0.89851 0.94248 0.84216 0.95663 0.91288 0.91878 0.93025 0.96855 0.97018 0.92785 0.81115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.57 101.05 1.07 1.32 16 2 O -0.36 -3.47 10.42 -41.02 -0.43 -3.89 16 3 C 0.54 6.36 7.92 34.01 0.27 6.63 16 4 O -0.50 -7.07 16.63 -19.36 -0.32 -7.39 16 5 C -0.27 -2.96 6.45 -36.84 -0.24 -3.20 16 6 C -0.01 -0.16 9.79 -40.42 -0.40 -0.55 16 7 C -0.11 -1.14 5.29 -106.46 -0.56 -1.70 16 8 C 0.12 1.26 5.93 -4.97 -0.03 1.23 16 9 N -0.69 -9.28 6.49 -115.05 -0.75 -10.03 16 10 C 0.06 0.89 5.69 -3.82 -0.02 0.87 16 11 C -0.10 -1.97 5.41 -26.73 -0.14 -2.11 16 12 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 13 C -0.52 -15.02 9.66 -34.44 -0.33 -15.35 16 14 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 15 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 16 N -0.90 -28.26 13.96 55.43 0.77 -27.49 16 17 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 21 C -0.22 -1.88 10.67 29.20 0.31 -1.57 16 22 S 0.24 1.98 22.92 -107.50 -2.46 -0.49 16 23 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.16 1.77 8.06 -52.48 -0.42 1.35 16 27 H 0.08 0.90 8.13 -51.93 -0.42 0.48 16 28 H 0.04 0.39 8.12 -51.93 -0.42 -0.03 16 29 H 0.34 4.35 8.72 -39.29 -0.34 4.01 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 35 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 36 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 37 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 334.69 15.07 5.04 5.04 Total: -1.00 -33.17 334.69 -8.44 -41.62 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -5.34 Total: -1.58 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -0.29 Total: -13.06 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.03 Total: -37.51 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -0.75 Total: -11.28 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.46 Total: -0.49 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.17 -8.44 -41.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894239277.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.201 kcal (2) G-P(sol) polarization free energy of solvation -33.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds