Wall clock time and date at job start Tue Mar 31 2020 05:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34893 * 117.00008 * 2 1 4 4 O 1.21624 * 120.00028 * 359.97438 * 3 2 1 5 5 C 1.46394 * 120.00038 * 179.97438 * 3 2 1 6 6 C 1.36751 * 125.46360 * 179.97438 * 5 3 2 7 7 C 1.37418 * 113.29019 * 180.02562 * 6 5 3 8 8 C 1.50697 * 122.44520 * 179.97438 * 7 6 5 9 9 N 1.46905 * 109.47066 * 89.99844 * 8 7 6 10 10 C 1.46901 * 110.99870 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.46916 * 180.02562 * 10 9 8 12 12 C 1.52996 * 109.46700 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.46820 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00070 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00019 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99993 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 120.00130 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.47108 * 89.99504 * 17 15 13 19 19 H 1.48498 * 109.47097 * 209.99712 * 17 15 13 20 20 H 1.48499 * 109.46508 * 329.99366 * 17 15 13 21 21 C 1.33863 * 115.10808 * 0.24675 * 7 6 5 22 22 S 1.70613 * 110.96068 * 359.62205 * 21 7 6 23 23 H 1.08996 * 109.46900 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46917 * 300.00407 * 1 2 3 25 25 H 1.08996 * 109.46825 * 60.00837 * 1 2 3 26 26 H 1.08003 * 123.35644 * 0.05432 * 6 5 3 27 27 H 1.09001 * 109.47558 * 330.00007 * 8 7 6 28 28 H 1.08998 * 109.47216 * 209.99670 * 8 7 6 29 29 H 1.00901 * 110.99869 * 56.04737 * 9 8 7 30 30 H 1.09004 * 109.47031 * 299.99620 * 10 9 8 31 31 H 1.08995 * 109.47111 * 59.99900 * 10 9 8 32 32 H 1.08995 * 109.46615 * 299.99641 * 11 10 9 33 33 H 1.08996 * 109.46939 * 60.00272 * 11 10 9 34 34 H 1.08993 * 109.47740 * 299.99810 * 12 11 10 35 35 H 1.09005 * 109.47573 * 59.99976 * 12 11 10 36 36 H 0.96999 * 120.00009 * 180.02562 * 16 15 13 37 37 H 1.07996 * 124.51500 * 179.72526 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4020 2.2219 -0.0005 5 6 3.5263 1.2785 0.0006 6 6 4.2604 2.4323 0.0001 7 6 5.6170 2.2133 0.0003 8 6 6.6178 3.3399 -0.0007 9 7 6.9431 3.7071 1.3840 10 6 7.9179 4.8054 1.4222 11 6 8.2315 5.1586 2.8776 12 6 9.2473 6.3020 2.9173 13 6 9.5556 6.6503 4.3507 14 1 9.0755 6.1098 5.1531 15 6 10.4516 7.6582 4.6379 16 7 10.7203 7.9625 5.8888 17 14 11.2827 8.5925 3.2501 18 1 10.4565 9.7702 2.8819 19 1 12.6244 9.0484 3.6942 20 1 11.4279 7.7015 2.0710 21 6 5.9845 0.9261 -0.0044 22 16 4.6201 -0.0982 0.0012 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 3.8180 3.4176 0.0002 27 1 6.1939 4.2022 -0.5153 28 1 7.5245 3.0200 -0.5142 29 1 7.2778 2.9079 1.9010 30 1 8.8337 4.4960 0.9184 31 1 7.5025 5.6777 0.9176 32 1 7.3159 5.4678 3.3816 33 1 8.6471 4.2861 3.3817 34 1 10.1627 5.9925 2.4133 35 1 8.8321 7.1746 2.4130 36 1 11.3503 8.6718 6.0908 37 1 7.0082 0.5820 -0.0092 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894239277.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:40 Heat of formation + Delta-G solvation = -84.696861 kcal Electronic energy + Delta-G solvation = -18544.049307 eV Core-core repulsion = 15411.910481 eV Total energy + Delta-G solvation = -3132.138827 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.44928 -39.63943 -37.64650 -37.20509 -35.28941 -33.42831 -31.53807 -29.14371 -28.59293 -26.72668 -25.28783 -23.59620 -22.16685 -21.70695 -20.13917 -19.61592 -18.87385 -18.03358 -17.48905 -17.24825 -16.70643 -16.42418 -15.84745 -15.63795 -15.12095 -14.76937 -14.53859 -14.44866 -14.24112 -13.90184 -13.68392 -13.39995 -13.15956 -13.10809 -12.86626 -12.53922 -12.50399 -11.96492 -11.89553 -11.80620 -11.76447 -11.51819 -11.42848 -11.25938 -10.75516 -10.00693 -9.51220 -9.27172 -8.28479 -6.32879 -0.69155 0.44099 0.87116 1.08153 1.37144 1.38980 1.51135 1.59282 1.80361 2.37410 3.06716 3.40591 3.75737 3.92413 4.05604 4.24913 4.27553 4.28481 4.30654 4.37825 4.57102 4.64984 4.68614 4.72146 4.78465 4.93239 4.99956 5.11758 5.14430 5.20049 5.36931 5.53396 5.63255 5.67804 6.08778 6.30763 6.49041 6.52991 6.75767 7.31602 8.88571 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.033139 B = 0.002461 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.716240 B =11373.878760 C =11676.220722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.359 6.359 3 C 0.541 3.459 4 O -0.534 6.534 5 C -0.303 4.303 6 C -0.025 4.025 7 C -0.128 4.128 8 C 0.119 3.881 9 N -0.696 5.696 10 C 0.071 3.929 11 C -0.092 4.092 12 C -0.011 4.011 13 C -0.534 4.534 14 H 0.028 0.972 15 C -0.002 4.002 16 N -0.954 5.954 17 Si 0.956 3.044 18 H -0.267 1.267 19 H -0.284 1.284 20 H -0.243 1.243 21 C -0.211 4.211 22 S 0.301 5.699 23 H 0.139 0.861 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.144 0.856 27 H 0.081 0.919 28 H 0.057 0.943 29 H 0.345 0.655 30 H 0.038 0.962 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.047 0.953 34 H 0.023 0.977 35 H 0.019 0.981 36 H 0.266 0.734 37 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.149 -21.277 -19.117 32.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.275 6.275 3 C 0.386 3.614 4 O -0.426 6.426 5 C -0.421 4.421 6 C -0.060 4.060 7 C -0.140 4.140 8 C -0.011 4.011 9 N -0.328 5.328 10 C -0.058 4.058 11 C -0.130 4.130 12 C -0.049 4.049 13 C -0.572 4.572 14 H 0.046 0.954 15 C -0.198 4.198 16 N -0.595 5.595 17 Si 0.779 3.221 18 H -0.192 1.192 19 H -0.210 1.210 20 H -0.166 1.166 21 C -0.350 4.350 22 S 0.571 5.429 23 H 0.157 0.843 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.162 0.838 27 H 0.100 0.900 28 H 0.075 0.925 29 H 0.163 0.837 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.041 0.959 35 H 0.037 0.963 36 H 0.075 0.925 37 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -16.032 -22.111 -18.953 33.243 hybrid contribution 1.144 2.063 0.063 2.360 sum -14.887 -20.049 -18.889 31.311 Atomic orbital electron populations 1.23628 0.73766 1.06143 1.02759 1.86561 1.25680 1.31086 1.84193 1.19886 0.87619 0.81795 0.72054 1.90881 1.66835 1.36987 1.47922 1.23555 0.94050 1.00396 1.24139 1.20706 0.92791 0.98414 0.94056 1.18563 0.93595 0.95075 1.06804 1.20586 0.95741 0.95128 0.89678 1.60449 1.46860 1.11916 1.13556 1.21892 0.93263 0.94366 0.96302 1.21269 0.98170 0.97828 0.95721 1.19498 0.95588 0.95313 0.94460 1.21540 1.24636 1.17972 0.93053 0.95395 1.26118 0.97244 0.98030 0.98397 1.70087 1.36655 1.32247 1.20488 0.85572 0.77596 0.79183 0.79752 1.19248 1.21012 1.16587 1.25818 1.06773 0.97363 1.05061 1.82943 0.90966 1.04448 1.64514 0.84348 0.91961 0.91643 0.83834 0.90045 0.92464 0.83710 0.94353 0.91101 0.93672 0.93406 0.95884 0.96294 0.92535 0.78526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.57 113.37 1.20 1.55 16 2 O -0.36 -6.63 10.42 -58.07 -0.61 -7.24 16 3 C 0.54 12.74 7.92 69.94 0.55 13.29 16 4 O -0.53 -15.73 16.63 19.43 0.32 -15.41 16 5 C -0.30 -6.36 6.45 24.05 0.16 -6.21 16 6 C -0.02 -0.54 9.79 21.73 0.21 -0.33 16 7 C -0.13 -2.38 5.29 -21.05 -0.11 -2.49 16 8 C 0.12 2.34 5.93 85.55 0.51 2.85 16 9 N -0.70 -17.58 6.49 -517.92 -3.36 -20.94 16 10 C 0.07 2.08 5.69 86.30 0.49 2.57 16 11 C -0.09 -3.58 5.41 30.59 0.17 -3.41 16 12 C -0.01 -0.50 4.04 29.85 0.12 -0.38 16 13 C -0.53 -31.54 9.66 25.60 0.25 -31.29 16 14 H 0.03 1.82 7.99 -2.91 -0.02 1.80 16 15 C 0.00 -0.10 5.47 84.65 0.46 0.36 16 16 N -0.95 -61.03 13.96 21.45 0.30 -60.73 16 17 Si 0.96 44.59 27.47 68.60 1.88 46.47 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 20 H -0.24 -10.31 6.54 99.48 0.65 -9.66 16 21 C -0.21 -2.93 10.67 66.82 0.71 -2.22 16 22 S 0.30 4.16 22.92 -56.49 -1.29 2.86 16 23 H 0.14 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 27 H 0.08 1.63 8.13 -2.39 -0.02 1.61 16 28 H 0.06 0.94 8.12 -2.39 -0.02 0.92 16 29 H 0.34 8.12 8.72 -89.69 -0.78 7.34 16 30 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.02 1.03 7.20 -2.39 -0.02 1.02 16 35 H 0.02 0.86 7.57 -2.38 -0.02 0.84 16 36 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 37 H 0.20 1.68 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -73.57 334.69 2.19 -71.38 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 0.23 Total: 9.30 kcal Atomic # 6 Polarization: -30.42 SS G_CDS: 4.72 Total: -25.70 kcal Atomic # 7 Polarization: -78.61 SS G_CDS: -3.06 Total: -81.67 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.28 Total: -22.64 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.88 Total: 46.47 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -1.29 Total: 2.86 kcal Total: -73.57 2.19 -71.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894239277.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.318 kcal (2) G-P(sol) polarization free energy of solvation -73.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds