Wall clock time and date at job start Tue Mar 31 2020 05:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.76207 * 102.99706 * 2 1 4 4 C 1.35446 * 125.86980 * 179.97438 * 3 2 1 5 5 C 1.41386 * 106.77299 * 179.82656 * 4 3 2 6 6 C 1.34456 * 106.94139 * 0.35011 * 5 4 3 7 7 C 1.50701 * 125.71250 * 179.91453 * 6 5 4 8 8 N 1.46903 * 109.47426 * 89.71336 * 7 6 5 9 9 C 1.48563 * 111.00026 * 290.13028 * 8 7 6 10 10 C 1.54377 * 104.59170 * 200.95950 * 9 8 7 11 11 C 1.54252 * 105.06483 * 23.85055 * 10 9 8 12 12 O 1.42907 * 110.32664 * 241.00599 * 11 10 9 13 13 C 1.50698 * 110.32719 * 118.89894 * 11 10 9 14 14 H 1.08005 * 119.99734 * 238.54769 * 13 11 10 15 15 C 1.37871 * 119.99971 * 58.53854 * 13 11 10 16 16 N 1.31514 * 120.00364 * 5.75832 * 15 13 11 17 17 Si 1.86804 * 120.00118 * 185.75939 * 15 13 11 18 18 H 1.48500 * 109.46895 * 265.14763 * 17 15 13 19 19 H 1.48495 * 109.47053 * 145.14524 * 17 15 13 20 20 H 1.48503 * 109.47081 * 25.14793 * 17 15 13 21 21 C 1.48557 * 111.00207 * 174.70713 * 8 7 6 22 22 O 1.34412 * 125.87342 * 0.02881 * 3 2 1 23 23 H 1.09005 * 109.46999 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47387 * 299.99728 * 1 2 3 25 25 H 1.09003 * 109.47350 * 60.00147 * 1 2 3 26 26 H 1.07999 * 126.61049 * 0.05732 * 4 3 2 27 27 H 1.08002 * 126.52369 * 180.25080 * 5 4 3 28 28 H 1.09002 * 109.46817 * 329.71473 * 7 6 5 29 29 H 1.09001 * 109.47492 * 209.71737 * 7 6 5 30 30 H 1.08994 * 110.40999 * 82.17635 * 9 8 7 31 31 H 1.09002 * 110.41056 * 319.73205 * 9 8 7 32 32 H 1.09011 * 110.32118 * 264.95345 * 10 9 8 33 33 H 1.09000 * 110.32719 * 142.75017 * 10 9 8 34 34 H 0.96703 * 113.99631 * 303.57965 * 12 11 10 35 35 H 0.96995 * 120.00552 * 180.02562 * 16 15 13 36 36 H 1.09002 * 110.40714 * 40.26466 * 21 8 7 37 37 H 1.08995 * 110.41460 * 277.82439 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2102 1.7169 0.0000 4 6 3.4582 2.2434 0.0005 5 6 3.3080 3.6492 -0.0038 6 6 1.9874 3.9022 0.0012 7 6 1.3536 5.2694 0.0010 8 7 1.1482 5.7138 -1.3840 9 6 2.4445 6.0142 -2.0447 10 6 2.0754 6.9432 -3.2211 11 6 0.7370 7.5931 -2.8141 12 8 -0.2854 7.2542 -3.7533 13 6 0.8880 9.0898 -2.7236 14 1 0.6739 9.5990 -1.7955 15 6 1.2997 9.8090 -3.8255 16 7 1.4514 9.2067 -4.9848 17 14 1.6420 11.6390 -3.6719 18 1 0.4307 12.4037 -4.0634 19 1 2.7703 12.0080 -4.5641 20 1 1.9972 11.9598 -2.2662 21 6 0.4099 7.0023 -1.4258 22 8 1.3261 2.7294 0.0005 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 4.3886 1.6950 0.0001 27 1 4.1027 4.3806 -0.0084 28 1 2.0081 5.9733 0.5151 29 1 0.3932 5.2248 0.5145 30 1 2.9044 5.0976 -2.4138 31 1 3.1143 6.5249 -1.3528 32 1 1.9521 6.3641 -4.1365 33 1 2.8416 7.7067 -3.3556 34 1 -0.0759 7.4942 -4.6664 35 1 1.7414 9.7126 -5.7599 36 1 0.7614 7.6675 -0.6372 37 1 -0.6619 6.8296 -1.3291 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895079730.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:28 Heat of formation + Delta-G solvation = -25.063067 kcal Electronic energy + Delta-G solvation = -20185.111159 eV Core-core repulsion = 17055.558247 eV Total energy + Delta-G solvation = -3129.552911 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.39224 -38.38721 -35.00681 -32.95553 -32.15174 -31.34645 -29.26728 -28.75418 -27.85987 -25.51494 -23.88532 -21.89693 -20.86274 -20.14702 -19.45220 -18.17457 -16.98638 -16.24932 -15.70542 -15.33687 -14.95353 -14.58007 -14.31345 -13.89332 -13.75154 -13.69232 -13.29978 -13.02464 -12.77227 -12.37980 -12.31298 -11.91557 -11.57491 -11.23943 -11.15146 -10.97367 -10.87608 -10.58430 -10.51091 -10.39327 -10.05835 -9.84639 -9.37986 -9.17937 -8.57491 -8.13493 -7.91933 -7.37825 -6.22116 -4.29985 1.13469 1.63976 1.77978 2.63028 3.20788 3.28650 3.31522 3.50588 4.28349 4.63518 4.83839 4.89107 4.99536 5.05377 5.07206 5.35295 5.48225 5.53271 5.68245 5.73866 5.89088 5.92823 5.98122 6.00970 6.15637 6.39270 6.54279 6.57847 6.88669 6.99553 7.07967 7.29631 7.45452 7.49780 7.55744 7.78899 8.20377 8.72674 9.38001 9.56476 10.85153 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.037805 B = 0.003553 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.472095 B = 7879.529377 C = 8076.984433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 S -0.037 6.037 3 C -0.040 4.040 4 C -0.173 4.173 5 C -0.199 4.199 6 C 0.025 3.975 7 C 0.117 3.883 8 N -0.508 5.508 9 C 0.032 3.968 10 C -0.120 4.120 11 C 0.254 3.746 12 O -0.585 6.585 13 C -0.538 4.538 14 H 0.060 0.940 15 C 0.071 3.929 16 N -0.891 5.891 17 Si 0.897 3.103 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.051 3.949 22 O -0.165 6.165 23 H 0.109 0.891 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.150 0.850 27 H 0.150 0.850 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.036 0.964 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.378 0.622 35 H 0.267 0.733 36 H 0.049 0.951 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.231 -13.800 9.608 16.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 S 0.199 5.801 3 C -0.201 4.201 4 C -0.200 4.200 5 C -0.220 4.220 6 C -0.030 4.030 7 C -0.011 4.011 8 N -0.232 5.232 9 C -0.095 4.095 10 C -0.159 4.159 11 C 0.214 3.786 12 O -0.394 6.394 13 C -0.577 4.577 14 H 0.078 0.922 15 C -0.131 4.131 16 N -0.531 5.531 17 Si 0.725 3.275 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.076 4.076 22 O -0.063 6.063 23 H 0.127 0.873 24 H 0.106 0.894 25 H 0.109 0.891 26 H 0.168 0.832 27 H 0.168 0.832 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.228 0.772 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.991 -15.466 9.703 18.366 hybrid contribution 0.419 2.897 -0.107 2.929 sum 2.410 -12.569 9.596 15.996 Atomic orbital electron populations 1.23595 0.94246 1.07003 1.06876 1.85503 1.06993 0.93778 1.93800 1.24044 0.91025 0.92256 1.12748 1.21470 0.96308 0.93991 1.08222 1.21517 0.95928 0.95544 1.08984 1.22472 0.90925 0.85987 1.03629 1.20694 1.00474 0.86997 0.92951 1.65457 1.16128 1.29724 1.11905 1.23199 0.90311 0.98759 0.97251 1.22865 1.00947 0.96792 0.95303 1.19223 0.83599 0.91528 0.84285 1.86147 1.46517 1.85364 1.21351 1.21684 1.46007 0.92206 0.97783 0.92191 1.24986 0.94286 0.98812 0.95056 1.69718 1.46807 1.36582 0.99956 0.86497 0.78036 0.84855 0.78127 1.20541 1.21021 1.19797 1.23111 0.98323 0.87433 0.98724 1.84204 1.36177 1.13727 1.72161 0.87259 0.89415 0.89099 0.83231 0.83198 0.91422 0.89462 0.91644 0.94616 0.92681 0.90965 0.77210 0.92336 0.93329 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.47 101.05 1.06 -0.25 16 2 S -0.04 -0.42 22.75 -107.50 -2.45 -2.86 16 3 C -0.04 -0.57 7.35 29.74 0.22 -0.35 16 4 C -0.17 -2.37 10.88 -39.38 -0.43 -2.80 16 5 C -0.20 -2.86 10.19 -39.72 -0.40 -3.27 16 6 C 0.02 0.39 6.46 -35.64 -0.23 0.16 16 7 C 0.12 1.86 5.34 -4.97 -0.03 1.83 16 8 N -0.51 -9.90 5.36 -231.41 -1.24 -11.14 16 9 C 0.03 0.64 5.67 -2.18 -0.01 0.62 16 10 C -0.12 -2.79 5.52 -25.35 -0.14 -2.93 16 11 C 0.25 6.30 1.05 -90.39 -0.09 6.20 16 12 O -0.59 -15.56 12.94 -35.23 -0.46 -16.02 16 13 C -0.54 -14.27 8.10 -34.44 -0.28 -14.55 16 14 H 0.06 1.57 7.62 -52.48 -0.40 1.17 16 15 C 0.07 1.87 4.93 -17.82 -0.09 1.78 16 16 N -0.89 -23.72 10.92 55.43 0.61 -23.12 16 17 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 C 0.05 1.09 5.76 -2.18 -0.01 1.08 16 22 O -0.17 -2.66 10.35 4.49 0.05 -2.61 16 23 H 0.11 0.67 8.14 -51.92 -0.42 0.25 16 24 H 0.09 0.76 8.14 -51.92 -0.42 0.34 16 25 H 0.09 0.88 8.14 -51.92 -0.42 0.45 16 26 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 27 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16 28 H 0.07 0.97 7.88 -51.93 -0.41 0.56 16 29 H 0.09 1.28 8.13 -51.93 -0.42 0.86 16 30 H 0.07 1.24 7.92 -51.93 -0.41 0.83 16 31 H 0.04 0.65 7.82 -51.93 -0.41 0.25 16 32 H 0.05 1.33 7.98 -51.92 -0.41 0.91 16 33 H 0.07 1.78 7.17 -51.93 -0.37 1.41 16 34 H 0.38 10.11 7.43 45.56 0.34 10.45 16 35 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 36 H 0.05 0.99 7.58 -51.93 -0.39 0.59 16 37 H 0.07 1.62 8.08 -51.93 -0.42 1.20 16 LS Contribution 321.37 15.07 4.84 4.84 Total: -1.00 -28.60 321.37 -8.67 -37.27 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -4.56 Total: 10.74 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -0.44 Total: -12.47 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: -0.64 Total: -34.26 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.41 Total: -18.63 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: -0.42 SS G_CDS: -2.45 Total: -2.86 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.60 -8.67 -37.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895079730.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.203 kcal (2) G-P(sol) polarization free energy of solvation -28.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds