Wall clock time and date at job start Tue Mar 31 2020 05:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.76193 * 102.99889 * 2 1 4 4 C 1.35450 * 125.86973 * 180.02562 * 3 2 1 5 5 C 1.41384 * 106.77359 * 180.02562 * 4 3 2 6 6 C 1.34456 * 106.94600 * 359.97438 * 5 4 3 7 7 C 1.50698 * 125.71623 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.46997 * 90.00131 * 7 6 5 9 9 C 1.47846 * 110.99547 * 69.87578 * 8 7 6 10 10 C 1.54915 * 104.79538 * 213.63497 * 9 8 7 11 11 C 1.55138 * 101.64918 * 37.06908 * 10 9 8 12 12 O 1.42903 * 110.70514 * 82.73025 * 11 10 9 13 13 C 1.50702 * 110.70453 * 205.96503 * 11 10 9 14 14 H 1.07994 * 120.00075 * 113.60253 * 13 11 10 15 15 C 1.37882 * 119.99448 * 293.60045 * 13 11 10 16 16 N 1.31507 * 120.00690 * 0.02562 * 15 13 11 17 17 Si 1.86805 * 119.99337 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47163 * 90.00356 * 17 15 13 19 19 H 1.48502 * 109.47114 * 209.99823 * 17 15 13 20 20 H 1.48502 * 109.47427 * 330.00136 * 17 15 13 21 21 C 1.47437 * 111.00223 * 309.03175 * 8 7 6 22 22 O 1.34412 * 125.87547 * 0.35211 * 3 2 1 23 23 H 1.08996 * 109.47455 * 59.99782 * 1 2 3 24 24 H 1.08996 * 109.47107 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46449 * 299.99593 * 1 2 3 26 26 H 1.07995 * 126.61069 * 0.06207 * 4 3 2 27 27 H 1.08004 * 126.52706 * 180.02562 * 5 4 3 28 28 H 1.08999 * 109.47022 * 330.00581 * 7 6 5 29 29 H 1.09001 * 109.47374 * 210.00575 * 7 6 5 30 30 H 1.08995 * 110.38030 * 332.46412 * 9 8 7 31 31 H 1.09000 * 110.37255 * 94.81067 * 9 8 7 32 32 H 1.08995 * 110.99221 * 155.16374 * 10 9 8 33 33 H 1.09001 * 110.98790 * 278.98277 * 10 9 8 34 34 H 0.96708 * 113.99729 * 66.39819 * 12 11 10 35 35 H 0.96997 * 120.00710 * 179.97438 * 16 15 13 36 36 H 1.08998 * 109.89349 * 242.66131 * 21 8 7 37 37 H 1.08999 * 109.89127 * 3.85194 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.4584 2.2432 -0.0005 5 6 3.3082 3.6491 0.0003 6 6 1.9877 3.9021 0.0007 7 6 1.3540 5.2694 0.0021 8 7 1.1479 5.7150 -1.3824 9 6 0.0860 4.9246 -2.0408 10 6 0.5261 4.8281 -3.5230 11 6 2.0649 4.6882 -3.3845 12 8 2.4272 3.3310 -3.1220 13 6 2.7597 5.1971 -4.6212 14 1 3.3806 6.0791 -4.5674 15 6 2.6025 4.5367 -5.8212 16 7 1.8460 3.4630 -5.8869 17 14 3.4643 5.1671 -7.3540 18 1 4.8029 4.5339 -7.4652 19 1 2.6551 4.8275 -8.5520 20 1 3.6201 6.6412 -7.2635 21 6 2.3875 5.5837 -2.1698 22 8 1.3264 2.7293 0.0067 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5138 0.8901 26 1 4.3887 1.6948 -0.0019 27 1 4.1029 4.3804 -0.0002 28 1 2.0087 5.9728 0.5165 29 1 0.3938 5.2243 0.5160 30 1 0.0230 3.9305 -1.5983 31 1 -0.8726 5.4373 -1.9623 32 1 0.0955 3.9486 -4.0017 33 1 0.2640 5.7350 -4.0679 34 1 2.2449 2.7265 -3.8545 35 1 1.7351 2.9985 -6.7312 36 1 2.7165 6.5656 -2.5101 37 1 3.1649 5.1195 -1.5630 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895079732.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:32 Heat of formation + Delta-G solvation = -20.311135 kcal Electronic energy + Delta-G solvation = -21389.868328 eV Core-core repulsion = 18260.521476 eV Total energy + Delta-G solvation = -3129.346852 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -42.06349 -38.37210 -34.81966 -32.65531 -32.00411 -31.05605 -29.02656 -28.33245 -28.02863 -25.52902 -23.78909 -21.51410 -20.73097 -19.87314 -19.31023 -17.80898 -17.06933 -16.08967 -15.51272 -14.98538 -14.84809 -14.47642 -14.05484 -13.65977 -13.64382 -13.50014 -13.42852 -12.52130 -12.41474 -12.25877 -11.94649 -11.67215 -11.63742 -11.21147 -10.92753 -10.82964 -10.67434 -10.59085 -10.42123 -10.32186 -9.87992 -9.64618 -9.21728 -8.88770 -8.56711 -8.01207 -7.84167 -7.00569 -6.17682 -4.24555 1.47098 2.04064 2.11251 3.07919 3.24205 3.31306 3.34584 3.86534 4.32933 4.69680 5.05135 5.08691 5.10929 5.23146 5.43684 5.49244 5.68798 5.73618 5.83398 6.04319 6.12547 6.17613 6.24147 6.31827 6.38222 6.49212 6.56652 6.92818 6.96323 7.07799 7.36568 7.46282 7.51060 7.61308 7.68584 7.86271 8.18467 8.76381 9.43789 9.62026 10.89150 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.019049 B = 0.006181 C = 0.005485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.535825 B = 4529.016489 C = 5103.554686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S -0.041 6.041 3 C -0.030 4.030 4 C -0.163 4.163 5 C -0.177 4.177 6 C -0.023 4.023 7 C 0.127 3.873 8 N -0.517 5.517 9 C 0.036 3.964 10 C -0.131 4.131 11 C 0.243 3.757 12 O -0.579 6.579 13 C -0.530 4.530 14 H 0.060 0.940 15 C 0.070 3.930 16 N -0.898 5.898 17 Si 0.898 3.102 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.041 3.959 22 O -0.168 6.168 23 H 0.088 0.912 24 H 0.106 0.894 25 H 0.083 0.917 26 H 0.143 0.857 27 H 0.145 0.855 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.379 0.621 35 H 0.266 0.734 36 H 0.077 0.923 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.504 -3.358 11.636 12.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 S 0.195 5.805 3 C -0.190 4.190 4 C -0.190 4.190 5 C -0.198 4.198 6 C -0.079 4.079 7 C -0.002 4.002 8 N -0.239 5.239 9 C -0.092 4.092 10 C -0.170 4.170 11 C 0.202 3.798 12 O -0.388 6.388 13 C -0.569 4.569 14 H 0.078 0.922 15 C -0.131 4.131 16 N -0.538 5.538 17 Si 0.726 3.274 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.086 4.086 22 O -0.065 6.065 23 H 0.107 0.893 24 H 0.125 0.875 25 H 0.102 0.898 26 H 0.161 0.839 27 H 0.162 0.838 28 H 0.118 0.882 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.230 0.770 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.249 -3.726 12.103 12.862 hybrid contribution -0.146 0.266 -1.709 1.735 sum -2.395 -3.460 10.395 11.214 Atomic orbital electron populations 1.23539 0.94855 1.06684 1.06488 1.85417 1.06382 0.94727 1.93960 1.23785 0.90989 0.91779 1.12480 1.21310 0.96044 0.94021 1.07605 1.21327 0.95636 0.95365 1.07520 1.23434 0.91940 0.86875 1.05604 1.21116 1.00318 0.85352 0.93422 1.64071 1.08102 1.51002 1.00707 1.23151 0.93957 0.95113 0.96950 1.23180 1.00274 1.01557 0.92003 1.19566 0.89137 0.80590 0.90478 1.86160 1.87420 1.19678 1.45521 1.21615 1.29764 1.12210 0.93290 0.92151 1.24987 0.94427 0.94719 0.99000 1.69596 1.38550 1.18819 1.26878 0.86495 0.79521 0.79288 0.82094 1.20567 1.21183 1.19811 1.23104 0.90628 0.99735 0.95144 1.84162 1.36240 1.13729 1.72416 0.89254 0.87548 0.89814 0.83882 0.83776 0.88216 0.90187 0.93860 0.92068 0.91089 0.92023 0.77027 0.92401 0.90474 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 10.47 101.05 1.06 -0.65 16 2 S -0.04 -0.60 22.75 -107.50 -2.45 -3.04 16 3 C -0.03 -0.52 7.35 29.74 0.22 -0.31 16 4 C -0.16 -2.88 10.88 -39.38 -0.43 -3.31 16 5 C -0.18 -3.13 8.88 -39.72 -0.35 -3.48 16 6 C -0.02 -0.41 5.17 -35.65 -0.18 -0.59 16 7 C 0.13 2.04 5.90 -4.98 -0.03 2.01 16 8 N -0.52 -9.87 5.41 -232.69 -1.26 -11.13 16 9 C 0.04 0.72 6.47 -2.29 -0.01 0.70 16 10 C -0.13 -3.08 5.66 -24.59 -0.14 -3.21 16 11 C 0.24 5.99 0.86 -89.95 -0.08 5.91 16 12 O -0.58 -14.97 13.01 -35.23 -0.46 -15.43 16 13 C -0.53 -14.25 8.21 -34.44 -0.28 -14.54 16 14 H 0.06 1.62 7.53 -52.49 -0.40 1.22 16 15 C 0.07 1.87 5.28 -17.82 -0.09 1.78 16 16 N -0.90 -24.22 10.69 55.43 0.59 -23.63 16 17 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 C 0.04 0.88 5.69 -2.84 -0.02 0.86 16 22 O -0.17 -3.12 9.39 4.47 0.04 -3.08 16 23 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 26 H 0.14 2.27 8.06 -52.49 -0.42 1.84 16 27 H 0.14 2.31 7.59 -52.48 -0.40 1.91 16 28 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 29 H 0.08 1.15 8.08 -51.93 -0.42 0.73 16 30 H 0.04 0.90 6.32 -51.93 -0.33 0.57 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.78 7.76 -51.93 -0.40 1.37 16 33 H 0.06 1.48 8.04 -51.93 -0.42 1.07 16 34 H 0.38 10.37 6.99 45.56 0.32 10.69 16 35 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.08 1.68 7.63 -51.93 -0.40 1.28 16 37 H 0.07 1.38 4.37 -51.93 -0.23 1.16 16 LS Contribution 314.34 15.07 4.74 4.74 Total: -1.00 -28.47 314.34 -8.49 -36.97 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -4.34 Total: 13.54 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -0.34 Total: -14.81 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: -0.67 Total: -34.76 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.42 Total: -18.50 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -0.60 SS G_CDS: -2.45 Total: -3.04 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.47 -8.49 -36.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895079732.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.655 kcal (2) G-P(sol) polarization free energy of solvation -28.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds