Wall clock time and date at job start Tue Mar 31 2020 05:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31274 * 1 3 3 Si 1.86802 * 120.00084 * 2 1 4 4 H 1.48497 * 109.46697 * 269.99566 * 3 2 1 5 5 H 1.48496 * 109.47113 * 30.00026 * 3 2 1 6 6 H 1.48503 * 109.46844 * 149.99904 * 3 2 1 7 7 C 1.39193 * 119.99762 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99840 * 182.43158 * 7 2 1 9 9 N 1.36651 * 120.00206 * 2.16044 * 7 2 1 10 10 C 1.34776 * 120.00126 * 146.43920 * 9 7 2 11 11 O 1.21613 * 120.00183 * 5.52496 * 10 9 7 12 12 C 1.47678 * 120.00104 * 185.52995 * 10 9 7 13 13 N 1.32488 * 120.64910 * 74.22092 * 12 10 9 14 14 N 1.28097 * 123.16082 * 180.02562 * 13 12 10 15 15 C 1.31787 * 123.51032 * 0.02562 * 14 13 12 16 16 C 1.40454 * 119.16268 * 359.97438 * 15 14 13 17 17 C 1.40221 * 122.72828 * 180.02562 * 16 15 14 18 18 C 1.36287 * 119.35934 * 179.17008 * 17 16 15 19 19 C 1.39342 * 121.06969 * 0.82514 * 18 17 16 20 20 C 1.36403 * 121.07999 * 359.44609 * 19 18 17 21 21 C 1.39784 * 119.42376 * 359.97438 * 20 19 18 22 22 C 1.46504 * 120.00088 * 326.44139 * 9 7 2 23 23 C 1.52999 * 117.49450 * 313.09359 * 22 9 7 24 24 C 1.52999 * 117.49814 * 244.43339 * 22 9 7 25 25 H 0.96997 * 119.99976 * 5.01043 * 1 2 3 26 26 H 1.07998 * 120.41790 * 180.02562 * 15 14 13 27 27 H 1.08002 * 120.31428 * 359.97438 * 17 16 15 28 28 H 1.08005 * 119.46057 * 180.26203 * 18 17 16 29 29 H 1.07999 * 119.46312 * 179.42291 * 19 18 17 30 30 H 1.07999 * 120.29172 * 179.97438 * 20 19 18 31 31 H 1.09000 * 115.54882 * 98.75892 * 22 9 7 32 32 H 1.09001 * 117.50423 * 359.97438 * 23 22 9 33 33 H 1.08998 * 117.49638 * 145.02013 * 23 22 9 34 34 H 1.08994 * 117.49646 * 214.97585 * 24 22 9 35 35 H 1.09001 * 117.49711 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3127 0.0000 0.0000 3 14 2.2468 1.6177 0.0000 4 1 2.4943 2.0463 -1.4001 5 1 1.4443 2.6527 0.7000 6 1 3.5443 1.4401 0.7001 7 6 2.0087 -1.2055 0.0005 8 1 3.0879 -1.2059 0.0402 9 7 1.3261 -2.3885 -0.0435 10 6 1.8526 -3.4465 -0.6915 11 8 2.9769 -3.3807 -1.1503 12 6 1.0641 -4.6858 -0.8445 13 7 0.0602 -4.7454 -1.7070 14 7 -0.6551 -5.7942 -1.8783 15 6 -0.4679 -6.9185 -1.2167 16 6 0.5663 -6.9911 -0.2692 17 6 0.8321 -8.1489 0.4759 18 6 1.8645 -8.1486 1.3655 19 6 2.6477 -7.0123 1.5580 20 6 2.4130 -5.8678 0.8540 21 6 1.3698 -5.8353 -0.0759 22 6 0.0220 -2.5068 0.6135 23 6 -0.1011 -1.9693 2.0407 24 6 -0.0910 -3.4793 1.7893 25 1 -0.4850 0.8368 -0.0734 26 1 -1.1013 -7.7736 -1.4014 27 1 0.2325 -9.0363 0.3366 28 1 2.0733 -9.0409 1.9372 29 1 3.4536 -7.0381 2.2765 30 1 3.0277 -4.9943 1.0136 31 1 -0.8445 -2.4038 -0.0396 32 1 0.7881 -1.5281 2.4909 33 1 -1.0489 -1.5132 2.3266 34 1 -1.0320 -4.0158 1.9098 35 1 0.8048 -4.0314 2.0736 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930615628.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:45 Heat of formation + Delta-G solvation = 82.777872 kcal Electronic energy + Delta-G solvation = -22155.116429 eV Core-core repulsion = 18927.088652 eV Total energy + Delta-G solvation = -3228.027778 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.14459 -38.65200 -37.80921 -36.18254 -33.34286 -32.88628 -31.63738 -31.21945 -30.21855 -26.11400 -24.58263 -24.07252 -22.74285 -21.66594 -21.35419 -19.80645 -18.08989 -17.89597 -16.98434 -16.66154 -15.81573 -15.21043 -14.86536 -14.66246 -14.45269 -14.17966 -13.96669 -13.76540 -13.25247 -12.84805 -12.45166 -12.21922 -12.14393 -11.50919 -11.37194 -11.18167 -10.81039 -10.75303 -10.63951 -10.40063 -10.31131 -9.80344 -9.44766 -9.33100 -9.26060 -8.90977 -8.68809 -8.30189 -7.75017 -6.37227 -4.03395 0.33225 0.76818 1.85687 3.02851 3.14249 3.23836 3.27088 3.48436 3.94503 4.09584 4.27942 4.51222 4.60209 4.66103 4.70774 4.76825 4.92826 5.05515 5.07374 5.19976 5.53669 5.60290 5.73449 5.76618 5.84545 5.91862 5.97043 6.16250 6.22282 6.29245 6.40058 6.45711 6.70712 6.73478 6.90807 7.17468 7.49276 8.04519 8.34715 9.00885 9.12873 9.23954 9.78389 10.67749 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.024317 B = 0.005819 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.187033 B = 4810.560187 C = 4968.900603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.048 3.952 3 Si 0.925 3.075 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.321 4.321 8 H 0.098 0.902 9 N -0.392 5.392 10 C 0.507 3.493 11 O -0.566 6.566 12 C 0.129 3.871 13 N -0.237 5.237 14 N -0.260 5.260 15 C 0.068 3.932 16 C -0.079 4.079 17 C -0.098 4.098 18 C -0.100 4.100 19 C -0.108 4.108 20 C -0.073 4.073 21 C -0.056 4.056 22 C 0.129 3.871 23 C -0.128 4.128 24 C -0.231 4.231 25 H 0.271 0.729 26 H 0.173 0.827 27 H 0.136 0.864 28 H 0.129 0.871 29 H 0.131 0.869 30 H 0.140 0.860 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.997 -13.626 6.262 15.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.158 4.158 3 Si 0.751 3.249 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.448 4.448 8 H 0.116 0.884 9 N -0.108 5.108 10 C 0.292 3.708 11 O -0.449 6.449 12 C -0.030 4.030 13 N -0.072 5.072 14 N -0.090 5.090 15 C -0.108 4.108 16 C -0.086 4.086 17 C -0.118 4.118 18 C -0.119 4.119 19 C -0.128 4.128 20 C -0.093 4.093 21 C -0.064 4.064 22 C 0.024 3.976 23 C -0.166 4.166 24 C -0.269 4.269 25 H 0.081 0.919 26 H 0.190 0.810 27 H 0.154 0.846 28 H 0.147 0.853 29 H 0.149 0.851 30 H 0.158 0.842 31 H 0.127 0.873 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.574 -12.503 4.874 13.511 hybrid contribution 0.977 0.001 1.066 1.445 sum -0.597 -12.502 5.939 13.854 Atomic orbital electron populations 1.69830 1.05989 1.28063 1.45736 1.25453 0.95521 0.99570 0.95280 0.85957 0.79356 0.80886 0.78715 1.20065 1.20835 1.19314 1.19487 0.92288 0.81282 1.51737 0.88410 1.42800 1.16187 1.09313 1.42538 1.17160 0.87127 0.82997 0.83545 1.90685 1.18825 1.82315 1.53082 1.23544 0.92664 0.95370 0.91379 1.73020 1.02106 1.17393 1.14672 1.72647 1.19944 0.96375 1.20051 1.24618 0.95353 0.98411 0.92386 1.18854 0.96906 0.94645 0.98235 1.20907 0.98157 0.96667 0.96060 1.21023 0.94834 0.98406 0.97685 1.21062 0.99666 0.92656 0.99378 1.21105 0.95421 0.99222 0.93505 1.18767 0.96792 0.93476 0.97407 1.21213 0.88060 0.99912 0.88405 1.22641 1.02324 0.92362 0.99242 1.23588 1.01634 0.94366 1.07313 0.91893 0.81011 0.84569 0.85268 0.85118 0.84232 0.87340 0.88969 0.89537 0.89937 0.89951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.44 10.53 55.51 0.58 -21.86 16 2 C 0.05 1.25 5.13 -17.44 -0.09 1.16 16 3 Si 0.92 20.40 29.56 -169.99 -5.02 15.37 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.32 -8.73 8.63 -15.05 -0.13 -8.86 16 8 H 0.10 2.74 7.56 -52.49 -0.40 2.34 16 9 N -0.39 -10.13 2.90 -108.87 -0.32 -10.45 16 10 C 0.51 12.99 6.06 -12.41 -0.08 12.91 16 11 O -0.57 -16.01 16.90 5.27 0.09 -15.92 16 12 C 0.13 2.86 4.81 -82.44 -0.40 2.46 16 13 N -0.24 -5.36 11.40 33.54 0.38 -4.97 16 14 N -0.26 -4.98 11.41 30.91 0.35 -4.63 16 15 C 0.07 1.00 11.20 -16.74 -0.19 0.81 16 16 C -0.08 -1.17 5.75 -106.84 -0.61 -1.78 16 17 C -0.10 -1.05 9.84 -39.54 -0.39 -1.44 16 18 C -0.10 -1.00 9.95 -39.87 -0.40 -1.40 16 19 C -0.11 -1.29 9.95 -39.83 -0.40 -1.68 16 20 C -0.07 -1.17 8.71 -39.67 -0.35 -1.52 16 21 C -0.06 -1.02 5.41 -106.56 -0.58 -1.60 16 22 C 0.13 3.00 3.42 -67.93 -0.23 2.76 16 23 C -0.13 -2.67 8.69 -26.69 -0.23 -2.90 16 24 C -0.23 -4.45 9.35 -26.69 -0.25 -4.70 16 25 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 26 H 0.17 1.68 8.06 -52.49 -0.42 1.26 16 27 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 28 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 29 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.14 2.46 7.32 -52.49 -0.38 2.07 16 31 H 0.11 2.74 8.04 -51.93 -0.42 2.32 16 32 H 0.09 2.00 7.96 -51.93 -0.41 1.59 16 33 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 34 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.08 1.56 7.24 -51.93 -0.38 1.18 16 LS Contribution 305.88 15.07 4.61 4.61 Total: -1.00 -32.02 305.88 -7.29 -39.32 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -3.66 Total: 4.30 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -4.31 Total: -5.77 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 1.00 Total: -41.91 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: 0.09 Total: -15.92 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.02 -7.29 -39.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930615628.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.096 kcal (2) G-P(sol) polarization free energy of solvation -32.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds