Wall clock time and date at job start Tue Mar 31 2020 05:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31274 * 1 3 3 Si 1.86802 * 120.00084 * 2 1 4 4 H 1.48497 * 109.46697 * 269.99566 * 3 2 1 5 5 H 1.48496 * 109.47113 * 30.00026 * 3 2 1 6 6 H 1.48503 * 109.46844 * 149.99904 * 3 2 1 7 7 C 1.39193 * 119.99762 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99840 * 182.43158 * 7 2 1 9 9 N 1.36651 * 120.00206 * 2.16044 * 7 2 1 10 10 C 1.34776 * 120.00126 * 146.43920 * 9 7 2 11 11 O 1.21613 * 120.00183 * 5.52496 * 10 9 7 12 12 C 1.47678 * 120.00104 * 185.52995 * 10 9 7 13 13 N 1.32488 * 120.64910 * 74.22092 * 12 10 9 14 14 N 1.28097 * 123.16082 * 180.02562 * 13 12 10 15 15 C 1.31787 * 123.51032 * 0.02562 * 14 13 12 16 16 C 1.40454 * 119.16268 * 359.97438 * 15 14 13 17 17 C 1.40221 * 122.72828 * 180.02562 * 16 15 14 18 18 C 1.36287 * 119.35934 * 179.17008 * 17 16 15 19 19 C 1.39342 * 121.06969 * 0.82514 * 18 17 16 20 20 C 1.36403 * 121.07999 * 359.44609 * 19 18 17 21 21 C 1.39784 * 119.42376 * 359.97438 * 20 19 18 22 22 C 1.46504 * 120.00088 * 326.44139 * 9 7 2 23 23 C 1.52999 * 117.49450 * 313.09359 * 22 9 7 24 24 C 1.52999 * 117.49814 * 244.43339 * 22 9 7 25 25 H 0.96997 * 119.99976 * 5.01043 * 1 2 3 26 26 H 1.07998 * 120.41790 * 180.02562 * 15 14 13 27 27 H 1.08002 * 120.31428 * 359.97438 * 17 16 15 28 28 H 1.08005 * 119.46057 * 180.26203 * 18 17 16 29 29 H 1.07999 * 119.46312 * 179.42291 * 19 18 17 30 30 H 1.07999 * 120.29172 * 179.97438 * 20 19 18 31 31 H 1.09000 * 115.54882 * 98.75892 * 22 9 7 32 32 H 1.09001 * 117.50423 * 359.97438 * 23 22 9 33 33 H 1.08998 * 117.49638 * 145.02013 * 23 22 9 34 34 H 1.08994 * 117.49646 * 214.97585 * 24 22 9 35 35 H 1.09001 * 117.49711 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3127 0.0000 0.0000 3 14 2.2468 1.6177 0.0000 4 1 2.4943 2.0463 -1.4001 5 1 1.4443 2.6527 0.7000 6 1 3.5443 1.4401 0.7001 7 6 2.0087 -1.2055 0.0005 8 1 3.0879 -1.2059 0.0402 9 7 1.3261 -2.3885 -0.0435 10 6 1.8526 -3.4465 -0.6915 11 8 2.9769 -3.3807 -1.1503 12 6 1.0641 -4.6858 -0.8445 13 7 0.0602 -4.7454 -1.7070 14 7 -0.6551 -5.7942 -1.8783 15 6 -0.4679 -6.9185 -1.2167 16 6 0.5663 -6.9911 -0.2692 17 6 0.8321 -8.1489 0.4759 18 6 1.8645 -8.1486 1.3655 19 6 2.6477 -7.0123 1.5580 20 6 2.4130 -5.8678 0.8540 21 6 1.3698 -5.8353 -0.0759 22 6 0.0220 -2.5068 0.6135 23 6 -0.1011 -1.9693 2.0407 24 6 -0.0910 -3.4793 1.7893 25 1 -0.4850 0.8368 -0.0734 26 1 -1.1013 -7.7736 -1.4014 27 1 0.2325 -9.0363 0.3366 28 1 2.0733 -9.0409 1.9372 29 1 3.4536 -7.0381 2.2765 30 1 3.0277 -4.9943 1.0136 31 1 -0.8445 -2.4038 -0.0396 32 1 0.7881 -1.5281 2.4909 33 1 -1.0489 -1.5132 2.3266 34 1 -1.0320 -4.0158 1.9098 35 1 0.8048 -4.0314 2.0736 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930615628.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:44 Heat of formation + Delta-G solvation = 61.299715 kcal Electronic energy + Delta-G solvation = -22156.047792 eV Core-core repulsion = 18927.088652 eV Total energy + Delta-G solvation = -3228.959140 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.44293 -40.46056 -38.95268 -38.05928 -35.12465 -34.35326 -33.16868 -32.75380 -31.39474 -27.86072 -26.11751 -25.27332 -24.08654 -23.24845 -23.10153 -21.43724 -19.36856 -19.16266 -18.85814 -18.18481 -17.27845 -16.96933 -16.48346 -16.10096 -15.69685 -15.64005 -15.45716 -14.96255 -14.89015 -14.58155 -13.99744 -13.56717 -13.29018 -13.14356 -13.06237 -12.63942 -12.52897 -12.39377 -12.16042 -12.12922 -11.75979 -11.50054 -11.21612 -10.84942 -10.66698 -10.54844 -10.32385 -9.75200 -9.47634 -8.36765 -6.12163 -0.83521 -0.36841 0.71610 1.32380 1.38815 1.50756 1.65199 1.93934 2.19074 2.58737 2.87492 2.91663 3.08464 3.32486 3.39084 3.43279 3.66181 3.77455 4.03924 4.07186 4.20207 4.25104 4.29378 4.38557 4.52556 4.62731 4.67821 4.85656 4.93599 5.01380 5.21686 5.27515 5.33491 5.34311 5.39045 5.40164 5.79094 6.02062 6.36830 6.99685 7.25214 7.75452 7.82970 8.66724 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.024317 B = 0.005819 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.187033 B = 4810.560187 C = 4968.900603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.016 3.984 3 Si 0.987 3.013 4 H -0.279 1.279 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.356 4.356 8 H 0.075 0.925 9 N -0.401 5.401 10 C 0.501 3.499 11 O -0.615 6.615 12 C 0.099 3.901 13 N -0.279 5.279 14 N -0.304 5.304 15 C 0.097 3.903 16 C -0.094 4.094 17 C -0.073 4.073 18 C -0.089 4.089 19 C -0.080 4.080 20 C -0.117 4.117 21 C -0.074 4.074 22 C 0.108 3.892 23 C -0.122 4.122 24 C -0.190 4.190 25 H 0.275 0.725 26 H 0.230 0.770 27 H 0.190 0.810 28 H 0.183 0.817 29 H 0.161 0.839 30 H 0.104 0.896 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.990 -17.454 8.466 19.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.189 4.189 3 Si 0.810 3.190 4 H -0.205 1.205 5 H -0.189 1.189 6 H -0.190 1.190 7 C -0.483 4.483 8 H 0.093 0.907 9 N -0.116 5.116 10 C 0.287 3.713 11 O -0.502 6.502 12 C -0.060 4.060 13 N -0.113 5.113 14 N -0.134 5.134 15 C -0.078 4.078 16 C -0.101 4.101 17 C -0.092 4.092 18 C -0.108 4.108 19 C -0.099 4.099 20 C -0.137 4.137 21 C -0.081 4.081 22 C 0.003 3.997 23 C -0.159 4.159 24 C -0.228 4.228 25 H 0.086 0.914 26 H 0.247 0.753 27 H 0.208 0.792 28 H 0.200 0.800 29 H 0.178 0.822 30 H 0.122 0.878 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.118 0.882 34 H 0.126 0.874 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.610 -16.334 7.089 17.996 hybrid contribution 1.289 0.931 0.444 1.651 sum -1.322 -15.403 7.533 17.197 Atomic orbital electron populations 1.69927 1.06835 1.29021 1.45178 1.26179 0.96410 1.02041 0.94271 0.85037 0.78450 0.77042 0.78453 1.20467 1.18947 1.19003 1.19501 0.91785 0.82963 1.54059 0.90716 1.42955 1.16735 1.09088 1.42868 1.17771 0.86861 0.84314 0.82310 1.90598 1.21038 1.83746 1.54781 1.22906 0.93801 0.95127 0.94210 1.72838 1.02890 1.19935 1.15600 1.72531 1.20706 0.97468 1.22674 1.25512 0.94559 0.98037 0.89683 1.19215 0.96575 0.95012 0.99317 1.21533 0.97929 0.96171 0.93580 1.21624 0.93217 0.98935 0.97055 1.21526 0.99539 0.91457 0.97359 1.20947 0.96306 1.00324 0.96165 1.18853 0.98241 0.93404 0.97630 1.20982 0.86002 1.03889 0.88834 1.22611 1.02285 0.93805 0.97242 1.23524 1.02827 0.93463 1.02995 0.91447 0.75349 0.79236 0.80010 0.82166 0.87810 0.90182 0.90313 0.88212 0.87436 0.89641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -47.29 10.53 21.70 0.23 -47.06 16 2 C 0.02 0.87 5.13 85.01 0.44 1.31 16 3 Si 0.99 43.23 29.56 68.60 2.03 45.26 16 4 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 7 C -0.36 -20.82 8.63 84.17 0.73 -20.10 16 8 H 0.08 4.58 7.56 -2.91 -0.02 4.56 16 9 N -0.40 -22.35 2.90 -616.59 -1.79 -24.14 16 10 C 0.50 27.96 6.06 86.74 0.53 28.49 16 11 O -0.62 -38.28 16.90 -4.07 -0.07 -38.34 16 12 C 0.10 4.66 4.81 42.38 0.20 4.87 16 13 N -0.28 -13.31 11.40 -47.79 -0.54 -13.85 16 14 N -0.30 -11.73 11.41 -56.13 -0.64 -12.37 16 15 C 0.10 2.56 11.20 85.24 0.95 3.52 16 16 C -0.09 -2.48 5.75 -21.30 -0.12 -2.60 16 17 C -0.07 -1.07 9.84 22.30 0.22 -0.85 16 18 C -0.09 -1.18 9.95 22.08 0.22 -0.96 16 19 C -0.08 -1.61 9.95 22.11 0.22 -1.39 16 20 C -0.12 -3.80 8.71 22.22 0.19 -3.61 16 21 C -0.07 -2.69 5.41 -21.12 -0.11 -2.81 16 22 C 0.11 5.27 3.42 44.99 0.15 5.42 16 23 C -0.12 -5.20 8.69 30.62 0.27 -4.94 16 24 C -0.19 -7.40 9.35 30.62 0.29 -7.12 16 25 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 26 H 0.23 3.10 8.06 -2.91 -0.02 3.08 16 27 H 0.19 0.87 8.06 -2.91 -0.02 0.85 16 28 H 0.18 0.70 8.06 -2.91 -0.02 0.67 16 29 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 30 H 0.10 4.02 7.32 -2.91 -0.02 4.00 16 31 H 0.08 4.33 8.04 -2.39 -0.02 4.31 16 32 H 0.08 3.56 7.96 -2.39 -0.02 3.54 16 33 H 0.10 3.93 8.14 -2.39 -0.02 3.91 16 34 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 35 H 0.09 3.29 7.24 -2.39 -0.02 3.28 16 Total: -1.00 -80.99 305.88 4.50 -76.49 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 1.12 Total: 14.79 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: 4.17 Total: -0.77 kcal Atomic # 7 Polarization: -94.68 SS G_CDS: -2.75 Total: -97.42 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -0.07 Total: -38.34 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -80.99 4.50 -76.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930615628.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.789 kcal (2) G-P(sol) polarization free energy of solvation -80.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds