Wall clock time and date at job start Tue Mar 31 2020 05:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 120.00354 * 2 1 4 4 H 1.48498 * 109.47452 * 240.00309 * 3 2 1 5 5 H 1.48501 * 109.47131 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47110 * 120.00214 * 3 2 1 7 7 C 1.37881 * 119.99465 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99886 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99815 * 359.97438 * 7 2 1 10 10 C 1.50712 * 109.46738 * 180.02562 * 9 7 2 11 11 O 1.21273 * 119.99825 * 359.97438 * 10 9 7 12 12 N 1.34772 * 119.99917 * 180.02562 * 10 9 7 13 13 C 1.39465 * 119.99988 * 174.91129 * 12 10 9 14 14 C 1.39181 * 120.09250 * 185.09010 * 13 12 10 15 15 C 1.39747 * 117.77630 * 179.78769 * 14 13 12 16 16 C 1.48395 * 121.10575 * 180.23419 * 15 14 13 17 17 C 1.39345 * 120.11833 * 359.97438 * 16 15 14 18 18 C 1.38011 * 119.87627 * 179.79227 * 17 16 15 19 19 C 1.38324 * 120.12145 * 0.48507 * 18 17 16 20 20 C 1.38324 * 120.24230 * 359.74337 * 19 18 17 21 21 C 1.38012 * 120.12235 * 0.02562 * 20 19 18 22 22 C 1.39872 * 117.79443 * 0.47940 * 15 14 13 23 23 N 1.31695 * 119.81537 * 359.75270 * 22 15 14 24 24 N 1.28286 * 122.41052 * 359.97438 * 23 22 15 25 25 H 0.96999 * 119.99298 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47150 * 60.00365 * 9 7 2 27 27 H 1.08994 * 109.47673 * 299.99858 * 9 7 2 28 28 H 0.97010 * 119.99815 * 354.63323 * 12 10 9 29 29 H 1.07997 * 121.10932 * 0.02562 * 14 13 12 30 30 H 1.08001 * 120.05826 * 359.97438 * 17 16 15 31 31 H 1.08001 * 119.94035 * 180.23092 * 18 17 16 32 32 H 1.08001 * 119.87897 * 179.76800 * 19 18 17 33 33 H 1.08002 * 119.93745 * 179.97438 * 20 19 18 34 34 H 1.08002 * 120.05809 * 179.97438 * 21 20 19 35 35 H 1.07994 * 120.09403 * 179.73100 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2508 -2.4991 -0.0005 10 6 2.2301 -3.6447 -0.0005 11 8 3.4225 -3.4232 -0.0010 12 7 1.7808 -4.9153 -0.0011 13 6 2.6826 -5.9738 -0.1082 14 6 2.2154 -7.2805 -0.2156 15 6 3.1612 -8.3034 -0.3249 16 6 2.7450 -9.7224 -0.4484 17 6 1.3921 -10.0561 -0.4566 18 6 1.0105 -11.3770 -0.5761 19 6 1.9683 -12.3698 -0.6775 20 6 3.3128 -12.0446 -0.6652 21 6 3.7055 -10.7265 -0.5509 22 6 4.5134 -7.9459 -0.3087 23 7 4.8543 -6.6787 -0.1980 24 7 3.9863 -5.7388 -0.1030 25 1 -0.4849 0.8401 0.0004 26 1 0.6239 -2.5566 -0.8903 27 1 0.6245 -2.5571 0.8896 28 1 0.8305 -5.0938 0.0771 29 1 1.1572 -7.4962 -0.2183 30 1 0.6435 -9.2821 -0.3725 31 1 -0.0378 -11.6364 -0.5862 32 1 1.6654 -13.4025 -0.7671 33 1 4.0565 -12.8238 -0.7443 34 1 4.7555 -10.4738 -0.5410 35 1 5.2757 -8.7069 -0.3863 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143194363.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:09 Heat of formation + Delta-G solvation = 55.575348 kcal Electronic energy + Delta-G solvation = -20175.895456 eV Core-core repulsion = 16946.688088 eV Total energy + Delta-G solvation = -3229.207368 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.15952 -39.45101 -38.63058 -34.87396 -34.18165 -32.99717 -31.60323 -30.82820 -30.04336 -28.79815 -25.17953 -24.78345 -23.50396 -22.46121 -21.73670 -19.98599 -18.13410 -17.38384 -17.16572 -16.30230 -16.22433 -15.74745 -15.31425 -15.20116 -14.75769 -14.43681 -14.05446 -14.03202 -13.69632 -13.24579 -13.20405 -12.94513 -12.15888 -11.82400 -11.60958 -11.48857 -10.98129 -10.90863 -10.84112 -10.74333 -10.56474 -10.01067 -9.54027 -9.36098 -9.35236 -8.75771 -8.67385 -8.49269 -8.41501 -6.11125 -4.11224 0.18608 1.00513 1.04399 1.55571 3.14637 3.30241 3.37263 3.38770 3.46240 3.54315 3.96281 4.03160 4.37476 4.38582 4.45217 4.53368 4.54678 4.70280 4.78981 4.97260 5.04815 5.14515 5.27724 5.36795 5.55603 5.63348 5.71157 5.92557 6.09467 6.10715 6.12503 6.19661 6.54644 6.74713 7.03838 7.19546 7.67325 7.92196 8.21123 8.88881 8.99776 9.09700 9.54365 11.01118 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.042218 B = 0.002967 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.064636 B = 9435.985836 C =10074.856787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.057 3.943 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.077 0.923 9 C 0.011 3.989 10 C 0.499 3.501 11 O -0.468 6.468 12 N -0.665 5.665 13 C 0.318 3.682 14 C -0.159 4.159 15 C -0.019 4.019 16 C -0.048 4.048 17 C -0.101 4.101 18 C -0.119 4.119 19 C -0.113 4.113 20 C -0.119 4.119 21 C -0.100 4.100 22 C 0.000 4.000 23 N -0.207 5.207 24 N -0.234 5.234 25 H 0.263 0.737 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.415 0.585 29 H 0.150 0.850 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.323 -26.100 -1.153 26.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.551 4.551 8 H 0.095 0.905 9 C -0.028 4.028 10 C 0.288 3.712 11 O -0.334 6.334 12 N -0.313 5.313 13 C 0.081 3.919 14 C -0.191 4.191 15 C -0.030 4.030 16 C -0.049 4.049 17 C -0.119 4.119 18 C -0.137 4.137 19 C -0.131 4.131 20 C -0.137 4.137 21 C -0.118 4.118 22 C -0.168 4.168 23 N -0.048 5.048 24 N -0.084 5.084 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.252 0.748 29 H 0.167 0.833 30 H 0.146 0.854 31 H 0.145 0.855 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 1.577 -24.455 -1.071 24.529 hybrid contribution -1.433 -0.436 -0.059 1.499 sum 0.143 -24.891 -1.130 24.917 Atomic orbital electron populations 1.69945 1.06062 1.27207 1.50812 1.24995 0.94938 0.99566 0.94952 0.86439 0.79358 0.81982 0.79023 1.20009 1.21334 1.20004 1.21113 0.94345 0.88870 1.50738 0.90502 1.19285 0.93880 0.89814 0.99850 1.22592 0.92035 0.82393 0.74206 1.90696 1.17301 1.82946 1.42457 1.44452 1.09320 1.05156 1.72365 1.20441 0.91297 0.87624 0.92558 1.21906 1.01438 0.91142 1.04649 1.19686 0.93882 0.92862 0.96598 1.18571 0.93740 0.90693 1.01892 1.21287 0.94980 0.96892 0.98731 1.21129 0.99881 0.92600 1.00080 1.21300 0.93162 0.99556 0.99068 1.21125 0.96267 0.96138 1.00180 1.21275 0.99433 0.92413 0.98685 1.24279 0.94713 0.96425 1.01377 1.73060 1.27809 0.98069 1.05873 1.73681 0.97954 1.23836 1.12965 0.92738 0.92967 0.93032 0.74803 0.83268 0.85422 0.85537 0.85800 0.85522 0.85245 0.81526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.97 13.29 55.43 0.74 -25.23 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.51 -14.69 8.92 -34.44 -0.31 -15.00 16 8 H 0.08 2.31 6.75 -52.49 -0.35 1.96 16 9 C 0.01 0.27 5.46 -29.03 -0.16 0.11 16 10 C 0.50 11.32 7.78 -10.98 -0.09 11.24 16 11 O -0.47 -12.49 13.75 5.56 0.08 -12.42 16 12 N -0.66 -11.46 5.39 -11.35 -0.06 -11.52 16 13 C 0.32 5.46 7.50 -154.48 -1.16 4.30 16 14 C -0.16 -2.00 9.43 -38.67 -0.36 -2.36 16 15 C -0.02 -0.23 5.92 -104.54 -0.62 -0.85 16 16 C -0.05 -0.46 5.88 -104.89 -0.62 -1.07 16 17 C -0.10 -0.83 9.46 -39.25 -0.37 -1.20 16 18 C -0.12 -0.82 10.03 -39.63 -0.40 -1.22 16 19 C -0.11 -0.73 10.04 -39.52 -0.40 -1.12 16 20 C -0.12 -0.80 10.03 -39.63 -0.40 -1.20 16 21 C -0.10 -0.80 9.45 -39.26 -0.37 -1.17 16 22 C 0.00 0.00 10.73 -17.00 -0.18 -0.18 16 23 N -0.21 -3.71 11.48 30.77 0.35 -3.35 16 24 N -0.23 -4.81 9.06 31.25 0.28 -4.52 16 25 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.05 1.28 8.14 -51.93 -0.42 0.85 16 27 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.42 5.31 8.72 -40.82 -0.36 4.95 16 29 H 0.15 1.31 6.41 -52.49 -0.34 0.97 16 30 H 0.13 0.86 6.34 -52.49 -0.33 0.53 16 31 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 32 H 0.12 0.53 8.06 -52.49 -0.42 0.10 16 33 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 34 H 0.13 0.82 6.31 -52.49 -0.33 0.49 16 35 H 0.17 1.56 6.34 -52.49 -0.33 1.23 16 LS Contribution 309.56 15.07 4.67 4.67 Total: -1.00 -35.60 309.56 -7.78 -43.39 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -3.29 Total: 0.10 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -5.52 Total: -8.22 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 1.31 Total: -44.62 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.08 Total: -12.42 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -35.60 -7.78 -43.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143194363.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.963 kcal (2) G-P(sol) polarization free energy of solvation -35.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds