Wall clock time and date at job start Tue Mar 31 2020 05:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 120.00354 * 2 1 4 4 H 1.48498 * 109.47452 * 240.00309 * 3 2 1 5 5 H 1.48501 * 109.47131 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47110 * 120.00214 * 3 2 1 7 7 C 1.37881 * 119.99465 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99886 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99815 * 359.97438 * 7 2 1 10 10 C 1.50712 * 109.46738 * 180.02562 * 9 7 2 11 11 O 1.21273 * 119.99825 * 359.97438 * 10 9 7 12 12 N 1.34772 * 119.99917 * 180.02562 * 10 9 7 13 13 C 1.39465 * 119.99988 * 174.91129 * 12 10 9 14 14 C 1.39181 * 120.09250 * 185.09010 * 13 12 10 15 15 C 1.39747 * 117.77630 * 179.78769 * 14 13 12 16 16 C 1.48395 * 121.10575 * 180.23419 * 15 14 13 17 17 C 1.39345 * 120.11833 * 359.97438 * 16 15 14 18 18 C 1.38011 * 119.87627 * 179.79227 * 17 16 15 19 19 C 1.38324 * 120.12145 * 0.48507 * 18 17 16 20 20 C 1.38324 * 120.24230 * 359.74337 * 19 18 17 21 21 C 1.38012 * 120.12235 * 0.02562 * 20 19 18 22 22 C 1.39872 * 117.79443 * 0.47940 * 15 14 13 23 23 N 1.31695 * 119.81537 * 359.75270 * 22 15 14 24 24 N 1.28286 * 122.41052 * 359.97438 * 23 22 15 25 25 H 0.96999 * 119.99298 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47150 * 60.00365 * 9 7 2 27 27 H 1.08994 * 109.47673 * 299.99858 * 9 7 2 28 28 H 0.97010 * 119.99815 * 354.63323 * 12 10 9 29 29 H 1.07997 * 121.10932 * 0.02562 * 14 13 12 30 30 H 1.08001 * 120.05826 * 359.97438 * 17 16 15 31 31 H 1.08001 * 119.94035 * 180.23092 * 18 17 16 32 32 H 1.08001 * 119.87897 * 179.76800 * 19 18 17 33 33 H 1.08002 * 119.93745 * 179.97438 * 20 19 18 34 34 H 1.08002 * 120.05809 * 179.97438 * 21 20 19 35 35 H 1.07994 * 120.09403 * 179.73100 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2508 -2.4991 -0.0005 10 6 2.2301 -3.6447 -0.0005 11 8 3.4225 -3.4232 -0.0010 12 7 1.7808 -4.9153 -0.0011 13 6 2.6826 -5.9738 -0.1082 14 6 2.2154 -7.2805 -0.2156 15 6 3.1612 -8.3034 -0.3249 16 6 2.7450 -9.7224 -0.4484 17 6 1.3921 -10.0561 -0.4566 18 6 1.0105 -11.3770 -0.5761 19 6 1.9683 -12.3698 -0.6775 20 6 3.3128 -12.0446 -0.6652 21 6 3.7055 -10.7265 -0.5509 22 6 4.5134 -7.9459 -0.3087 23 7 4.8543 -6.6787 -0.1980 24 7 3.9863 -5.7388 -0.1030 25 1 -0.4849 0.8401 0.0004 26 1 0.6239 -2.5566 -0.8903 27 1 0.6245 -2.5571 0.8896 28 1 0.8305 -5.0938 0.0771 29 1 1.1572 -7.4962 -0.2183 30 1 0.6435 -9.2821 -0.3725 31 1 -0.0378 -11.6364 -0.5862 32 1 1.6654 -13.4025 -0.7671 33 1 4.0565 -12.8238 -0.7443 34 1 4.7555 -10.4738 -0.5410 35 1 5.2757 -8.7069 -0.3863 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143194363.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:08 Heat of formation + Delta-G solvation = 32.208706 kcal Electronic energy + Delta-G solvation = -20176.908709 eV Core-core repulsion = 16946.688088 eV Total energy + Delta-G solvation = -3230.220621 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.34073 -40.55218 -39.79187 -36.39134 -35.16904 -35.05180 -32.61457 -31.81268 -30.82196 -30.65739 -26.48202 -26.04203 -24.96338 -23.14996 -22.72755 -21.41854 -19.22893 -18.63044 -18.40148 -18.14562 -17.36201 -16.80682 -16.72411 -16.41801 -16.12018 -15.58425 -15.45186 -14.90768 -14.72873 -14.31475 -14.20347 -13.96213 -13.92214 -13.40193 -12.84620 -12.68541 -12.58258 -12.33290 -12.16596 -12.05030 -11.83303 -11.63164 -11.50245 -10.85960 -10.63857 -10.30750 -9.87273 -9.84026 -9.43616 -8.27831 -6.34550 -0.68256 -0.09447 0.49187 0.76050 1.39970 1.42457 1.50771 1.77182 1.81610 2.41835 2.58294 2.99496 3.06094 3.08316 3.40366 3.46533 3.64860 3.73785 4.07055 4.20332 4.24003 4.32895 4.39666 4.56166 4.65026 4.84349 4.88217 5.01850 5.06766 5.14449 5.21282 5.41505 5.53838 5.56257 5.60514 5.70975 5.97412 6.03750 6.41962 6.77079 7.23523 7.36263 7.84836 8.83918 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.042218 B = 0.002967 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.064636 B = 9435.985836 C =10074.856787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.015 3.985 3 Si 0.962 3.038 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.541 4.541 8 H 0.053 0.947 9 C 0.016 3.984 10 C 0.507 3.493 11 O -0.517 6.517 12 N -0.648 5.648 13 C 0.296 3.704 14 C -0.145 4.145 15 C -0.006 4.006 16 C -0.073 4.073 17 C -0.106 4.106 18 C -0.126 4.126 19 C -0.108 4.108 20 C -0.125 4.125 21 C -0.105 4.105 22 C 0.012 3.988 23 N -0.251 5.251 24 N -0.300 5.300 25 H 0.269 0.731 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.436 0.564 29 H 0.190 0.810 30 H 0.140 0.860 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.141 0.859 35 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.404 -29.077 -1.390 29.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.184 4.184 3 Si 0.786 3.214 4 H -0.200 1.200 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.580 4.580 8 H 0.071 0.929 9 C -0.023 4.023 10 C 0.296 3.704 11 O -0.388 6.388 12 N -0.298 5.298 13 C 0.058 3.942 14 C -0.176 4.176 15 C -0.017 4.017 16 C -0.074 4.074 17 C -0.125 4.125 18 C -0.144 4.144 19 C -0.126 4.126 20 C -0.143 4.143 21 C -0.123 4.123 22 C -0.158 4.158 23 N -0.089 5.089 24 N -0.148 5.148 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.277 0.723 29 H 0.207 0.793 30 H 0.158 0.842 31 H 0.166 0.834 32 H 0.166 0.834 33 H 0.167 0.833 34 H 0.159 0.841 35 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 0.472 -27.473 -1.306 27.508 hybrid contribution -1.129 0.135 -0.010 1.137 sum -0.657 -27.338 -1.316 27.378 Atomic orbital electron populations 1.69999 1.06917 1.28269 1.50845 1.25706 0.95860 1.02488 0.94355 0.85552 0.78426 0.78551 0.78826 1.19973 1.19607 1.19934 1.21317 0.93668 0.91263 1.51717 0.92895 1.19101 0.93845 0.89610 0.99765 1.22070 0.90734 0.83854 0.73754 1.90675 1.18878 1.84161 1.45061 1.43809 1.10510 1.03726 1.71759 1.20542 0.90627 0.88811 0.94221 1.22223 1.03641 0.89017 1.02744 1.19970 0.93095 0.94265 0.94347 1.18531 0.94895 0.89220 1.04748 1.21525 0.94640 0.98053 0.98240 1.21447 1.01270 0.92120 0.99563 1.21716 0.93023 1.00824 0.97080 1.21450 0.97170 0.96122 0.99552 1.21522 0.99902 0.92799 0.98122 1.24899 0.96631 0.95597 0.98658 1.72941 1.28087 0.99585 1.08321 1.73460 0.99796 1.26055 1.15443 0.92234 0.92916 0.92848 0.72327 0.79285 0.84238 0.83420 0.83373 0.83276 0.84085 0.78006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.21 13.29 21.45 0.28 -52.93 16 2 C 0.02 0.87 5.46 84.65 0.46 1.33 16 3 Si 0.96 45.82 29.54 68.60 2.03 47.85 16 4 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 7 C -0.54 -32.09 8.92 25.60 0.23 -31.86 16 8 H 0.05 3.34 6.75 -2.91 -0.02 3.32 16 9 C 0.02 0.83 5.46 29.11 0.16 0.99 16 10 C 0.51 23.95 7.78 87.66 0.68 24.63 16 11 O -0.52 -29.23 13.75 -3.01 -0.04 -29.27 16 12 N -0.65 -22.63 5.39 -308.20 -1.66 -24.29 16 13 C 0.30 10.27 7.50 132.89 1.00 11.26 16 14 C -0.15 -3.42 9.43 22.86 0.22 -3.21 16 15 C -0.01 -0.12 5.92 -19.81 -0.12 -0.24 16 16 C -0.07 -1.19 5.88 -20.04 -0.12 -1.30 16 17 C -0.11 -1.39 9.46 22.48 0.21 -1.18 16 18 C -0.13 -1.26 10.03 22.24 0.22 -1.04 16 19 C -0.11 -0.95 10.04 22.31 0.22 -0.73 16 20 C -0.13 -1.21 10.03 22.24 0.22 -0.99 16 21 C -0.11 -1.36 9.45 22.48 0.21 -1.15 16 22 C 0.01 0.29 10.73 85.11 0.91 1.21 16 23 N -0.25 -9.23 11.48 -56.57 -0.65 -9.88 16 24 N -0.30 -12.83 9.06 -55.03 -0.50 -13.33 16 25 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 26 H 0.05 2.64 8.14 -2.39 -0.02 2.62 16 27 H 0.05 2.66 8.14 -2.39 -0.02 2.64 16 28 H 0.44 10.86 8.72 -92.70 -0.81 10.05 16 29 H 0.19 2.72 6.41 -2.91 -0.02 2.70 16 30 H 0.14 1.37 6.34 -2.91 -0.02 1.35 16 31 H 0.15 0.80 8.06 -2.91 -0.02 0.78 16 32 H 0.15 0.56 8.06 -2.91 -0.02 0.54 16 33 H 0.15 0.73 8.06 -2.91 -0.02 0.71 16 34 H 0.14 1.35 6.31 -2.91 -0.02 1.33 16 35 H 0.20 3.38 6.34 -2.91 -0.02 3.36 16 Total: -1.00 -81.15 309.56 4.32 -76.84 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 0.34 Total: 7.29 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 4.52 Total: -2.28 kcal Atomic # 7 Polarization: -97.90 SS G_CDS: -2.53 Total: -100.43 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.04 Total: -29.27 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -81.15 4.32 -76.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143194363.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.046 kcal (2) G-P(sol) polarization free energy of solvation -81.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds