Wall clock time and date at job start Tue Mar 31 2020 05:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99894 * 2 1 4 4 H 1.48497 * 109.47340 * 270.00405 * 3 2 1 5 5 H 1.48498 * 109.47378 * 30.00447 * 3 2 1 6 6 H 1.48500 * 109.46996 * 150.00200 * 3 2 1 7 7 C 1.37873 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99605 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00259 * 359.97438 * 7 2 1 10 10 C 1.50703 * 109.47359 * 180.02562 * 9 7 2 11 11 O 1.21283 * 119.99625 * 359.97438 * 10 9 7 12 12 N 1.34775 * 119.99950 * 180.02562 * 10 9 7 13 13 C 1.39694 * 119.99481 * 185.27636 * 12 10 9 14 14 C 1.39024 * 119.95203 * 33.45784 * 13 12 10 15 15 C 1.37797 * 120.05980 * 180.02562 * 14 13 12 16 16 C 1.39486 * 119.94663 * 359.97438 * 15 14 13 17 17 C 1.48194 * 120.05595 * 179.97438 * 16 15 14 18 18 C 1.39823 * 120.55766 * 179.97438 * 17 16 15 19 19 C 1.38272 * 118.28723 * 179.97438 * 18 17 16 20 20 N 1.32468 * 119.20093 * 0.02562 * 19 18 17 21 21 C 1.31813 * 121.06933 * 359.97438 * 20 19 18 22 22 N 1.31680 * 121.88123 * 359.74433 * 21 20 19 23 23 C 1.39478 * 119.88813 * 0.24685 * 16 15 14 24 24 C 1.37806 * 119.94525 * 359.51725 * 23 16 15 25 25 H 0.97000 * 120.00122 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47141 * 60.00486 * 9 7 2 27 27 H 1.09002 * 109.47775 * 300.00282 * 9 7 2 28 28 H 0.96989 * 120.00519 * 5.27908 * 12 10 9 29 29 H 1.08003 * 119.96784 * 0.02562 * 14 13 12 30 30 H 1.08007 * 120.03120 * 179.97438 * 15 14 13 31 31 H 1.07994 * 120.85473 * 359.97438 * 18 17 16 32 32 H 1.07999 * 120.39946 * 180.02562 * 19 18 17 33 33 H 1.07993 * 119.05799 * 179.97438 * 21 20 19 34 34 H 1.07995 * 120.02942 * 179.72746 * 23 16 15 35 35 H 1.08006 * 119.97669 * 180.23111 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 8 3.4227 -3.4230 -0.0010 12 7 1.7810 -4.9153 -0.0011 13 6 2.6839 -5.9754 0.1102 14 6 3.8365 -5.8281 0.8734 15 6 4.7290 -6.8722 0.9842 16 6 4.4749 -8.0778 0.3303 17 6 5.4333 -9.2020 0.4474 18 6 5.1888 -10.4153 -0.2032 19 6 6.1147 -11.4326 -0.0623 20 7 7.1935 -11.2266 0.6784 21 6 7.3956 -10.0710 1.2793 22 7 6.5448 -9.0719 1.1697 23 6 3.3201 -8.2215 -0.4385 24 6 2.4283 -7.1761 -0.5423 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8896 28 1 0.8308 -5.0937 -0.0787 29 1 4.0327 -4.8946 1.3799 30 1 5.6246 -6.7572 1.5770 31 1 4.2998 -10.5542 -0.8003 32 1 5.9602 -12.3836 -0.5502 33 1 8.2861 -9.9386 1.8757 34 1 3.1233 -9.1525 -0.9494 35 1 1.5320 -7.2882 -1.1346 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143201004.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:51 Heat of formation + Delta-G solvation = 35.369464 kcal Electronic energy + Delta-G solvation = -20068.485321 eV Core-core repulsion = 16838.401761 eV Total energy + Delta-G solvation = -3230.083560 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.18212 -40.00617 -38.10771 -34.89632 -33.61582 -33.06338 -32.50797 -30.93309 -29.80526 -28.38320 -24.95696 -24.75860 -23.56458 -22.52484 -21.59644 -19.79938 -18.02803 -17.53092 -17.39029 -16.46763 -16.02303 -15.62565 -15.14742 -15.02008 -14.85335 -14.53237 -14.11149 -13.88393 -13.78405 -13.26014 -12.96157 -12.88423 -12.23976 -12.04981 -11.54883 -11.38275 -11.12180 -10.86318 -10.84932 -10.72893 -10.27304 -10.05617 -9.64865 -9.47166 -9.39599 -9.05523 -8.79037 -8.52399 -7.80079 -6.15204 -4.15817 0.29776 0.75972 1.45321 1.68147 3.29028 3.30666 3.35748 3.41172 3.55547 3.62257 3.75721 3.94525 4.02217 4.21680 4.41450 4.68721 4.74963 4.94382 4.97512 5.23496 5.26114 5.34460 5.40136 5.53709 5.66718 5.95978 6.04724 6.11769 6.32122 6.45367 6.47378 6.67952 6.83485 6.99478 7.15072 7.17795 7.75546 7.87872 7.88221 8.20084 8.88179 8.95129 9.49926 10.96978 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.041769 B = 0.002841 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.190569 B = 9854.044724 C =10396.842117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.513 4.513 8 H 0.076 0.924 9 C 0.007 3.993 10 C 0.513 3.487 11 O -0.517 6.517 12 N -0.690 5.690 13 C 0.193 3.807 14 C -0.136 4.136 15 C -0.044 4.044 16 C -0.107 4.107 17 C 0.237 3.763 18 C -0.229 4.229 19 C 0.149 3.851 20 N -0.536 5.536 21 C 0.300 3.700 22 N -0.520 5.520 23 C -0.066 4.066 24 C -0.166 4.166 25 H 0.263 0.737 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.410 0.590 29 H 0.143 0.857 30 H 0.136 0.864 31 H 0.148 0.852 32 H 0.167 0.833 33 H 0.196 0.804 34 H 0.127 0.873 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.230 -21.687 -0.082 22.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.551 4.551 8 H 0.094 0.906 9 C -0.032 4.032 10 C 0.305 3.695 11 O -0.391 6.391 12 N -0.336 5.336 13 C 0.096 3.904 14 C -0.157 4.157 15 C -0.064 4.064 16 C -0.109 4.109 17 C 0.093 3.907 18 C -0.251 4.251 19 C -0.015 4.015 20 N -0.250 5.250 21 C 0.012 3.988 22 N -0.235 5.235 23 C -0.086 4.086 24 C -0.187 4.187 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.246 0.754 29 H 0.160 0.840 30 H 0.154 0.846 31 H 0.166 0.834 32 H 0.184 0.816 33 H 0.212 0.788 34 H 0.145 0.855 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.754 -21.168 0.480 22.225 hybrid contribution -0.912 0.624 -0.633 1.274 sum 5.841 -20.544 -0.153 21.359 Atomic orbital electron populations 1.69950 1.06066 1.27138 1.50711 1.25003 0.94934 0.99584 0.94964 0.86399 0.79852 0.82444 0.78251 1.20538 1.21192 1.19592 1.21125 0.94275 0.88927 1.50797 0.90567 1.19292 0.93988 0.90051 0.99899 1.22399 0.91549 0.82904 0.72677 1.90574 1.17875 1.84102 1.46507 1.44260 1.09929 1.05489 1.73883 1.18164 0.91513 0.87933 0.92800 1.21275 0.94638 1.00215 0.99546 1.21178 0.98385 0.90736 0.96091 1.18264 0.95225 0.93158 1.04261 1.20219 0.90162 0.91924 0.88392 1.22869 1.03126 0.95174 1.03930 1.23113 0.88110 0.98626 0.91670 1.68398 1.21905 1.24719 1.10013 1.24939 0.97006 0.83593 0.93252 1.68458 1.03533 1.33139 1.18330 1.20874 0.92509 0.98396 0.96817 1.20804 1.01861 0.93403 1.02600 0.92752 0.93046 0.92874 0.75421 0.83962 0.84594 0.83409 0.81576 0.78761 0.85492 0.85178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.58 13.29 55.43 0.74 -24.85 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -14.32 8.92 -34.44 -0.31 -14.62 16 8 H 0.08 2.22 6.75 -52.49 -0.35 1.86 16 9 C 0.01 0.16 5.46 -29.03 -0.16 0.01 16 10 C 0.51 10.93 7.55 -10.98 -0.08 10.85 16 11 O -0.52 -12.62 13.14 5.55 0.07 -12.55 16 12 N -0.69 -11.18 5.33 -9.84 -0.05 -11.23 16 13 C 0.19 2.96 6.28 -83.69 -0.53 2.44 16 14 C -0.14 -2.22 8.63 -39.45 -0.34 -2.57 16 15 C -0.04 -0.64 9.58 -39.28 -0.38 -1.01 16 16 C -0.11 -1.36 5.88 -104.88 -0.62 -1.98 16 17 C 0.24 2.81 6.76 -82.60 -0.56 2.25 16 18 C -0.23 -2.06 9.53 -38.98 -0.37 -2.43 16 19 C 0.15 1.27 11.29 -17.26 -0.19 1.07 16 20 N -0.54 -5.59 10.43 -14.66 -0.15 -5.75 16 21 C 0.30 3.15 12.28 -92.24 -1.13 2.02 16 22 N -0.52 -6.46 9.59 -11.12 -0.11 -6.56 16 23 C -0.07 -0.72 9.43 -39.28 -0.37 -1.09 16 24 C -0.17 -1.99 9.94 -39.45 -0.39 -2.39 16 25 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 26 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.05 1.28 8.14 -51.93 -0.42 0.85 16 28 H 0.41 5.26 8.82 -40.82 -0.36 4.90 16 29 H 0.14 2.63 6.41 -52.48 -0.34 2.29 16 30 H 0.14 1.89 7.57 -52.48 -0.40 1.49 16 31 H 0.15 0.90 6.32 -52.49 -0.33 0.57 16 32 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.20 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.13 0.96 6.27 -52.49 -0.33 0.63 16 35 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 310.54 15.07 4.68 4.68 Total: -1.00 -33.15 310.54 -8.73 -41.88 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -3.36 Total: 3.75 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -5.52 Total: -5.97 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.42 Total: -48.39 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.07 Total: -12.55 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.15 -8.73 -41.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143201004.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.250 kcal (2) G-P(sol) polarization free energy of solvation -33.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds