Wall clock time and date at job start Tue Mar 31 2020 05:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31365 * 1 3 3 Si 1.86803 * 120.00183 * 2 1 4 4 H 1.48498 * 109.47139 * 239.99905 * 3 2 1 5 5 H 1.48501 * 109.46896 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46763 * 120.00161 * 3 2 1 7 7 C 1.39051 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99829 * 163.67643 * 7 2 1 9 9 N 1.36875 * 119.99871 * 343.66761 * 7 2 1 10 10 C 1.46499 * 120.00029 * 317.39690 * 9 7 2 11 11 C 1.50697 * 109.47333 * 264.52389 * 10 9 7 12 12 C 1.38230 * 120.00208 * 267.26341 * 11 10 9 13 13 C 1.38239 * 119.99760 * 179.76695 * 12 11 10 14 14 C 1.38237 * 120.00144 * 0.50511 * 13 12 11 15 15 C 1.38232 * 119.99764 * 359.75127 * 14 13 12 16 16 C 1.38237 * 120.00309 * 359.97438 * 15 14 13 17 17 C 1.34773 * 119.99819 * 137.40139 * 9 7 2 18 18 O 1.21592 * 119.99999 * 183.98215 * 17 9 7 19 19 C 1.47716 * 119.99970 * 3.98279 * 17 9 7 20 20 C 1.40015 * 120.94623 * 329.67896 * 19 17 9 21 21 N 1.32141 * 118.91386 * 179.69541 * 20 19 17 22 22 C 1.31878 * 120.97437 * 0.28392 * 21 20 19 23 23 N 1.31878 * 122.11244 * 0.02562 * 22 21 20 24 24 C 1.32132 * 120.97505 * 359.97360 * 23 22 21 25 25 H 0.97002 * 119.99348 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47053 * 24.53225 * 10 9 7 27 27 H 1.09005 * 109.46839 * 144.52385 * 10 9 7 28 28 H 1.08000 * 120.00228 * 359.97438 * 12 11 10 29 29 H 1.08005 * 120.00062 * 180.23051 * 13 12 11 30 30 H 1.08000 * 120.00290 * 179.72235 * 14 13 12 31 31 H 1.07998 * 120.00084 * 179.97438 * 15 14 13 32 32 H 1.08001 * 120.00221 * 179.97438 * 16 15 14 33 33 H 1.07998 * 120.54453 * 359.97438 * 20 19 17 34 34 H 1.08001 * 118.94109 * 179.97438 * 22 21 20 35 35 H 1.07997 * 120.54326 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 3.1015 1.6964 -1.2125 5 1 1.2827 2.7465 0.0006 6 1 3.1015 1.6963 1.2125 7 6 2.0088 -1.2042 -0.0005 8 1 3.0562 -1.2230 -0.2634 9 7 1.3658 -2.3658 0.3323 10 6 0.4385 -2.3907 1.4661 11 6 1.1623 -2.8732 2.6967 12 6 1.1496 -4.2161 3.0241 13 6 1.8176 -4.6593 4.1503 14 6 2.4897 -3.7581 4.9547 15 6 2.4980 -2.4144 4.6301 16 6 1.8347 -1.9720 3.5009 17 6 1.5859 -3.4866 -0.3831 18 8 0.9612 -4.4995 -0.1336 19 6 2.5860 -3.4845 -1.4701 20 6 2.8543 -2.3198 -2.1994 21 7 3.7614 -2.3619 -3.1594 22 6 4.4045 -3.4792 -3.4371 23 7 4.1787 -4.6000 -2.7798 24 6 3.2886 -4.6487 -1.8044 25 1 -0.4849 0.8401 0.0004 26 1 0.0524 -1.3866 1.6418 27 1 -0.3892 -3.0644 1.2438 28 1 0.6205 -4.9195 2.3983 29 1 1.8108 -5.7091 4.4041 30 1 3.0078 -4.1037 5.8370 31 1 3.0226 -1.7103 5.2588 32 1 1.8408 -0.9221 3.2475 33 1 2.3318 -1.4010 -1.9780 34 1 5.1390 -3.4765 -4.2289 35 1 3.1095 -5.5702 -1.2704 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147431237.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:52 Heat of formation + Delta-G solvation = 49.645937 kcal Electronic energy + Delta-G solvation = -21784.090045 eV Core-core repulsion = 18554.625559 eV Total energy + Delta-G solvation = -3229.464486 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.52604 -39.06112 -37.92442 -35.17992 -33.18253 -32.22852 -31.83057 -30.43545 -30.36398 -26.21904 -25.41946 -23.78311 -23.67786 -22.00645 -20.92656 -19.58994 -17.91357 -17.11217 -16.93931 -16.35699 -15.69559 -14.88298 -14.72326 -14.54707 -14.35593 -14.26136 -13.57729 -13.18652 -13.11673 -12.93337 -12.87263 -12.28507 -12.12503 -11.73151 -11.37944 -11.18979 -10.98238 -10.94883 -10.57084 -10.52700 -10.32560 -10.20756 -9.38263 -9.05922 -8.77606 -8.73752 -8.40995 -8.20837 -7.75103 -6.66666 -4.41392 1.16293 1.62152 1.84332 1.91808 3.00349 3.08294 3.10180 3.69835 3.87602 4.19152 4.38866 4.52075 4.61856 4.71673 4.85413 5.24548 5.35750 5.39450 5.49934 5.67891 5.75420 5.78443 5.98486 6.04411 6.09978 6.34749 6.51373 6.53839 6.65573 6.91516 6.95459 6.96088 7.00859 7.14599 7.31612 7.42882 7.53115 7.66624 8.05022 8.52378 8.74406 9.16198 9.60845 10.34586 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.012257 B = 0.008093 C = 0.005698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.815696 B = 3459.078883 C = 4912.478882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.052 3.948 3 Si 0.909 3.091 4 H -0.264 1.264 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.356 4.356 8 H 0.091 0.909 9 N -0.418 5.418 10 C 0.153 3.847 11 C -0.084 4.084 12 C -0.101 4.101 13 C -0.132 4.132 14 C -0.132 4.132 15 C -0.132 4.132 16 C -0.097 4.097 17 C 0.522 3.478 18 O -0.590 6.590 19 C -0.199 4.199 20 C 0.184 3.816 21 N -0.534 5.534 22 C 0.281 3.719 23 N -0.536 5.536 24 C 0.176 3.824 25 H 0.277 0.723 26 H 0.110 0.890 27 H 0.068 0.932 28 H 0.126 0.874 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.121 0.879 33 H 0.208 0.792 34 H 0.188 0.812 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.837 -1.673 3.489 5.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.157 4.157 3 Si 0.734 3.266 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.484 4.484 8 H 0.108 0.892 9 N -0.134 5.134 10 C 0.031 3.969 11 C -0.086 4.086 12 C -0.120 4.120 13 C -0.150 4.150 14 C -0.151 4.151 15 C -0.150 4.150 16 C -0.116 4.116 17 C 0.310 3.690 18 O -0.476 6.476 19 C -0.206 4.206 20 C 0.019 3.981 21 N -0.248 5.248 22 C -0.006 4.006 23 N -0.250 5.250 24 C 0.009 3.991 25 H 0.088 0.912 26 H 0.127 0.873 27 H 0.086 0.914 28 H 0.144 0.856 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.139 0.861 33 H 0.224 0.776 34 H 0.204 0.796 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.992 -1.986 2.888 5.313 hybrid contribution -0.030 0.890 0.740 1.157 sum 3.962 -1.097 3.628 5.483 Atomic orbital electron populations 1.69863 1.06231 1.28744 1.43142 1.25455 0.95234 0.99849 0.95146 0.86250 0.79630 0.80783 0.79912 1.18869 1.20453 1.19395 1.19421 0.94627 0.84381 1.49933 0.89160 1.43150 1.38972 1.07868 1.23376 1.20368 0.90941 1.03485 0.82155 1.20602 0.98062 0.93330 0.96568 1.21282 0.98801 0.95706 0.96219 1.21071 0.99028 0.99008 0.95907 1.20995 1.00635 0.93666 0.99778 1.21058 1.00562 0.95612 0.97801 1.21125 0.96490 0.99969 0.93986 1.17876 0.84162 0.84919 0.82051 1.90626 1.51969 1.33991 1.71024 1.21870 1.01232 0.96448 1.01021 1.25002 0.88669 0.99413 0.85042 1.68603 1.09269 1.29353 1.17623 1.24954 0.95662 0.83934 0.96094 1.68386 1.18120 1.29888 1.08616 1.23269 0.87608 0.97546 0.90631 0.91237 0.87261 0.91374 0.85646 0.86873 0.87049 0.86865 0.86082 0.77583 0.79553 0.81552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -19.87 11.60 55.50 0.64 -19.23 16 2 C 0.05 1.17 4.92 -17.45 -0.09 1.08 16 3 Si 0.91 17.64 29.58 -169.99 -5.03 12.61 16 4 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 5 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.36 -8.05 6.08 -15.00 -0.09 -8.14 16 8 H 0.09 2.04 6.24 -52.48 -0.33 1.71 16 9 N -0.42 -9.59 2.48 -117.21 -0.29 -9.88 16 10 C 0.15 3.36 5.02 -5.20 -0.03 3.33 16 11 C -0.08 -1.67 5.42 -104.63 -0.57 -2.24 16 12 C -0.10 -1.89 9.52 -39.58 -0.38 -2.27 16 13 C -0.13 -2.13 10.05 -39.58 -0.40 -2.52 16 14 C -0.13 -2.00 10.05 -39.58 -0.40 -2.40 16 15 C -0.13 -2.11 10.05 -39.58 -0.40 -2.51 16 16 C -0.10 -1.78 9.71 -39.58 -0.38 -2.17 16 17 C 0.52 12.07 7.41 -12.39 -0.09 11.98 16 18 O -0.59 -14.45 15.74 5.28 0.08 -14.37 16 19 C -0.20 -4.15 5.59 -104.69 -0.59 -4.73 16 20 C 0.18 3.72 9.08 -16.75 -0.15 3.57 16 21 N -0.53 -10.00 10.42 -14.22 -0.15 -10.15 16 22 C 0.28 4.67 12.27 -92.01 -1.13 3.54 16 23 N -0.54 -9.53 10.42 -14.22 -0.15 -9.67 16 24 C 0.18 3.32 10.90 -16.75 -0.18 3.14 16 25 H 0.28 6.18 8.31 -40.82 -0.34 5.84 16 26 H 0.11 2.49 5.77 -51.93 -0.30 2.19 16 27 H 0.07 1.54 7.46 -51.93 -0.39 1.16 16 28 H 0.13 2.42 7.52 -52.49 -0.39 2.02 16 29 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 30 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 32 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 33 H 0.21 4.40 5.30 -52.49 -0.28 4.12 16 34 H 0.19 2.31 8.06 -52.49 -0.42 1.89 16 35 H 0.17 2.91 8.00 -52.49 -0.42 2.49 16 LS Contribution 306.51 15.07 4.62 4.62 Total: -1.00 -26.14 306.51 -8.49 -34.63 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -3.36 Total: 11.77 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -4.86 Total: -0.34 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 0.06 Total: -48.93 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: 0.08 Total: -14.37 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.61 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -26.14 -8.49 -34.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147431237.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.280 kcal (2) G-P(sol) polarization free energy of solvation -26.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds