Wall clock time and date at job start Tue Mar 31 2020 05:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31365 * 1 3 3 Si 1.86803 * 120.00183 * 2 1 4 4 H 1.48498 * 109.47139 * 239.99905 * 3 2 1 5 5 H 1.48501 * 109.46896 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46763 * 120.00161 * 3 2 1 7 7 C 1.39051 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99829 * 163.67643 * 7 2 1 9 9 N 1.36875 * 119.99871 * 343.66761 * 7 2 1 10 10 C 1.46499 * 120.00029 * 317.39690 * 9 7 2 11 11 C 1.50697 * 109.47333 * 264.52389 * 10 9 7 12 12 C 1.38230 * 120.00208 * 267.26341 * 11 10 9 13 13 C 1.38239 * 119.99760 * 179.76695 * 12 11 10 14 14 C 1.38237 * 120.00144 * 0.50511 * 13 12 11 15 15 C 1.38232 * 119.99764 * 359.75127 * 14 13 12 16 16 C 1.38237 * 120.00309 * 359.97438 * 15 14 13 17 17 C 1.34773 * 119.99819 * 137.40139 * 9 7 2 18 18 O 1.21592 * 119.99999 * 183.98215 * 17 9 7 19 19 C 1.47716 * 119.99970 * 3.98279 * 17 9 7 20 20 C 1.40015 * 120.94623 * 329.67896 * 19 17 9 21 21 N 1.32141 * 118.91386 * 179.69541 * 20 19 17 22 22 C 1.31878 * 120.97437 * 0.28392 * 21 20 19 23 23 N 1.31878 * 122.11244 * 0.02562 * 22 21 20 24 24 C 1.32132 * 120.97505 * 359.97360 * 23 22 21 25 25 H 0.97002 * 119.99348 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47053 * 24.53225 * 10 9 7 27 27 H 1.09005 * 109.46839 * 144.52385 * 10 9 7 28 28 H 1.08000 * 120.00228 * 359.97438 * 12 11 10 29 29 H 1.08005 * 120.00062 * 180.23051 * 13 12 11 30 30 H 1.08000 * 120.00290 * 179.72235 * 14 13 12 31 31 H 1.07998 * 120.00084 * 179.97438 * 15 14 13 32 32 H 1.08001 * 120.00221 * 179.97438 * 16 15 14 33 33 H 1.07998 * 120.54453 * 359.97438 * 20 19 17 34 34 H 1.08001 * 118.94109 * 179.97438 * 22 21 20 35 35 H 1.07997 * 120.54326 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 3.1015 1.6964 -1.2125 5 1 1.2827 2.7465 0.0006 6 1 3.1015 1.6963 1.2125 7 6 2.0088 -1.2042 -0.0005 8 1 3.0562 -1.2230 -0.2634 9 7 1.3658 -2.3658 0.3323 10 6 0.4385 -2.3907 1.4661 11 6 1.1623 -2.8732 2.6967 12 6 1.1496 -4.2161 3.0241 13 6 1.8176 -4.6593 4.1503 14 6 2.4897 -3.7581 4.9547 15 6 2.4980 -2.4144 4.6301 16 6 1.8347 -1.9720 3.5009 17 6 1.5859 -3.4866 -0.3831 18 8 0.9612 -4.4995 -0.1336 19 6 2.5860 -3.4845 -1.4701 20 6 2.8543 -2.3198 -2.1994 21 7 3.7614 -2.3619 -3.1594 22 6 4.4045 -3.4792 -3.4371 23 7 4.1787 -4.6000 -2.7798 24 6 3.2886 -4.6487 -1.8044 25 1 -0.4849 0.8401 0.0004 26 1 0.0524 -1.3866 1.6418 27 1 -0.3892 -3.0644 1.2438 28 1 0.6205 -4.9195 2.3983 29 1 1.8108 -5.7091 4.4041 30 1 3.0078 -4.1037 5.8370 31 1 3.0226 -1.7103 5.2588 32 1 1.8408 -0.9221 3.2475 33 1 2.3318 -1.4010 -1.9780 34 1 5.1390 -3.4765 -4.2289 35 1 3.1095 -5.5702 -1.2704 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147431237.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:51 Heat of formation + Delta-G solvation = 36.992376 kcal Electronic energy + Delta-G solvation = -21784.638745 eV Core-core repulsion = 18554.625559 eV Total energy + Delta-G solvation = -3230.013186 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.05956 -40.60188 -39.45530 -36.93915 -34.67247 -33.86360 -33.45604 -31.93368 -31.70121 -27.83087 -27.10585 -25.32510 -25.20583 -23.35407 -22.36617 -21.30379 -19.58215 -18.68154 -18.37859 -17.81966 -17.26558 -16.50186 -16.42196 -16.05434 -15.80779 -15.73529 -15.14249 -14.81005 -14.56084 -14.48409 -14.20933 -13.81618 -13.60868 -13.27941 -13.04106 -12.82828 -12.56194 -12.52593 -12.12570 -11.95644 -11.76510 -11.70898 -11.10683 -10.68237 -10.46530 -10.23870 -9.75267 -9.60906 -9.52984 -8.40509 -6.20703 -0.33939 0.08332 0.48459 0.57078 1.43893 1.48404 1.55664 2.01090 2.24898 2.67938 2.81405 3.01882 3.09444 3.23943 3.34660 3.69294 4.01972 4.09399 4.12620 4.20469 4.26082 4.36740 4.49969 4.58995 4.72820 4.86313 5.00916 5.12236 5.21017 5.25880 5.32945 5.46223 5.64301 5.64806 5.82219 5.92280 5.95376 6.20091 6.27878 6.97532 7.05905 7.38996 7.84391 8.61982 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.012257 B = 0.008093 C = 0.005698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.815696 B = 3459.078883 C = 4912.478882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.023 3.977 3 Si 0.967 3.033 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.360 4.360 8 H 0.091 0.909 9 N -0.423 5.423 10 C 0.161 3.839 11 C -0.107 4.107 12 C -0.119 4.119 13 C -0.129 4.129 14 C -0.122 4.122 15 C -0.127 4.127 16 C -0.113 4.113 17 C 0.511 3.489 18 O -0.616 6.616 19 C -0.222 4.222 20 C 0.185 3.815 21 N -0.541 5.541 22 C 0.292 3.708 23 N -0.534 5.534 24 C 0.184 3.816 25 H 0.279 0.721 26 H 0.095 0.905 27 H 0.045 0.955 28 H 0.108 0.892 29 H 0.142 0.858 30 H 0.153 0.847 31 H 0.145 0.855 32 H 0.112 0.888 33 H 0.193 0.807 34 H 0.235 0.765 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.315 -1.755 4.228 7.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.183 4.183 3 Si 0.790 3.210 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.488 4.488 8 H 0.108 0.892 9 N -0.139 5.139 10 C 0.038 3.962 11 C -0.108 4.108 12 C -0.138 4.138 13 C -0.147 4.147 14 C -0.140 4.140 15 C -0.145 4.145 16 C -0.132 4.132 17 C 0.299 3.701 18 O -0.504 6.504 19 C -0.230 4.230 20 C 0.019 3.981 21 N -0.255 5.255 22 C 0.006 3.994 23 N -0.248 5.248 24 C 0.018 3.982 25 H 0.089 0.911 26 H 0.113 0.887 27 H 0.063 0.937 28 H 0.126 0.874 29 H 0.160 0.840 30 H 0.170 0.830 31 H 0.163 0.837 32 H 0.130 0.870 33 H 0.209 0.791 34 H 0.251 0.749 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 6.480 -2.062 3.625 7.706 hybrid contribution -0.764 0.844 0.487 1.238 sum 5.716 -1.217 4.111 7.145 Atomic orbital electron populations 1.69952 1.07539 1.29447 1.44200 1.26082 0.95651 1.02162 0.94425 0.85368 0.78436 0.77279 0.79899 1.18502 1.20424 1.19027 1.19520 0.94575 0.84497 1.50182 0.89202 1.43338 1.38792 1.08123 1.23626 1.20185 0.90704 1.02017 0.83322 1.20431 0.99585 0.94378 0.96374 1.21232 1.00091 0.94904 0.97584 1.21400 0.97812 1.00840 0.94634 1.21456 0.99298 0.92917 1.00330 1.21416 0.99428 0.96891 0.96777 1.21148 0.97477 0.99342 0.95191 1.18290 0.84578 0.84690 0.82507 1.90586 1.53104 1.34715 1.71970 1.21741 1.02180 0.97680 1.01361 1.24697 0.89096 0.98691 0.85589 1.68660 1.09201 1.30406 1.17223 1.25902 0.94960 0.82716 0.95847 1.68523 1.17661 1.30288 1.08313 1.23435 0.87075 0.97162 0.90576 0.91123 0.88690 0.93691 0.87432 0.84050 0.82954 0.83734 0.86960 0.79069 0.74877 0.80591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -42.71 11.60 21.68 0.25 -42.46 16 2 C 0.02 1.06 4.92 84.96 0.42 1.48 16 3 Si 0.97 36.31 29.58 68.60 2.03 38.34 16 4 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 5 H -0.28 -10.40 7.11 99.48 0.71 -9.70 16 6 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 7 C -0.36 -16.78 6.08 84.10 0.51 -16.27 16 8 H 0.09 4.14 6.24 -2.91 -0.02 4.12 16 9 N -0.42 -20.36 2.48 -643.01 -1.59 -21.95 16 10 C 0.16 7.50 5.02 85.63 0.43 7.93 16 11 C -0.11 -4.38 5.42 -19.87 -0.11 -4.49 16 12 C -0.12 -4.54 9.52 22.27 0.21 -4.33 16 13 C -0.13 -3.90 10.05 22.27 0.22 -3.68 16 14 C -0.12 -3.26 10.05 22.27 0.22 -3.04 16 15 C -0.13 -3.74 10.05 22.27 0.22 -3.51 16 16 C -0.11 -4.15 9.71 22.27 0.22 -3.93 16 17 C 0.51 24.61 7.41 86.75 0.64 25.26 16 18 O -0.62 -31.65 15.74 -4.01 -0.06 -31.71 16 19 C -0.22 -9.42 5.59 -19.91 -0.11 -9.53 16 20 C 0.18 7.50 9.08 85.08 0.77 8.27 16 21 N -0.54 -19.40 10.42 -198.92 -2.07 -21.47 16 22 C 0.29 8.89 12.27 180.83 2.22 11.11 16 23 N -0.53 -17.83 10.42 -198.92 -2.07 -19.90 16 24 C 0.18 6.85 10.90 85.08 0.93 7.77 16 25 H 0.28 12.83 8.31 -92.71 -0.77 12.06 16 26 H 0.10 4.63 5.77 -2.39 -0.01 4.62 16 27 H 0.04 2.22 7.46 -2.38 -0.02 2.20 16 28 H 0.11 4.39 7.52 -2.91 -0.02 4.37 16 29 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 30 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 31 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 32 H 0.11 4.22 8.06 -2.91 -0.02 4.20 16 33 H 0.19 8.36 5.30 -2.91 -0.02 8.35 16 34 H 0.24 4.72 8.06 -2.91 -0.02 4.70 16 35 H 0.18 6.10 8.00 -2.91 -0.02 6.08 16 Total: -1.00 -57.95 306.51 4.40 -53.54 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: 1.12 Total: 32.58 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: 6.80 Total: 13.03 kcal Atomic # 7 Polarization: -100.30 SS G_CDS: -5.49 Total: -105.78 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -0.06 Total: -31.71 kcal Atomic # 14 Polarization: 36.31 SS G_CDS: 2.03 Total: 38.34 kcal Total: -57.95 4.40 -53.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147431237.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.534 kcal (2) G-P(sol) polarization free energy of solvation -57.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds