Wall clock time and date at job start Tue Mar 31 2020 05:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86805 * 119.99817 * 2 1 4 4 H 1.48502 * 109.46958 * 264.99366 * 3 2 1 5 5 H 1.48503 * 109.46752 * 24.98992 * 3 2 1 6 6 H 1.48491 * 109.47069 * 144.99056 * 3 2 1 7 7 C 1.40047 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99758 * 186.80046 * 7 2 1 9 9 C 1.46374 * 119.99915 * 6.80511 * 7 2 1 10 10 O 1.21688 * 120.00035 * 6.74812 * 9 7 2 11 11 N 1.34775 * 119.99718 * 186.74818 * 9 7 2 12 12 C 1.47587 * 134.49345 * 180.02562 * 11 9 7 13 13 C 1.53946 * 86.11945 * 155.35692 * 12 11 9 14 14 C 1.50699 * 113.74062 * 137.95113 * 13 12 11 15 15 C 1.39684 * 119.64632 * 324.06888 * 14 13 12 16 16 N 1.31337 * 120.71208 * 179.97438 * 15 14 13 17 17 C 1.33761 * 119.70465 * 359.97438 * 16 15 14 18 18 C 1.40585 * 121.09931 * 179.97438 * 17 16 15 19 19 C 1.36063 * 119.70922 * 180.02562 * 18 17 16 20 20 C 1.39407 * 120.97263 * 0.02562 * 19 18 17 21 21 C 1.36062 * 120.96877 * 359.97438 * 20 19 18 22 22 C 1.40590 * 119.71050 * 359.97438 * 21 20 19 23 23 N 1.31328 * 119.64425 * 144.09032 * 14 13 12 24 24 C 1.47818 * 134.46076 * 359.86652 * 11 9 7 25 25 H 0.96999 * 119.99828 * 0.02562 * 1 2 3 26 26 H 1.09003 * 113.76813 * 41.05442 * 12 11 9 27 27 H 1.08999 * 113.76522 * 269.65856 * 12 11 9 28 28 H 1.08998 * 113.74304 * 269.15380 * 13 12 11 29 29 H 1.08001 * 119.64189 * 0.02562 * 15 14 13 30 30 H 1.07998 * 120.14658 * 0.02562 * 18 17 16 31 31 H 1.08009 * 119.51701 * 180.02562 * 19 18 17 32 32 H 1.08004 * 119.51674 * 179.71944 * 20 19 18 33 33 H 1.07997 * 120.14562 * 179.97438 * 21 20 19 34 34 H 1.08994 * 113.76942 * 90.37612 * 24 11 9 35 35 H 1.09003 * 113.83501 * 318.91881 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.5940 1.9854 -1.3948 5 1 1.3891 2.6809 0.5915 6 1 3.4813 1.4732 0.8032 7 6 2.0070 -1.2128 0.0005 8 1 3.0813 -1.2160 0.1113 9 6 1.2829 -2.4761 -0.1491 10 8 0.0915 -2.4688 -0.3965 11 7 1.9358 -3.6472 -0.0129 12 6 1.5411 -5.0670 -0.0945 13 6 3.0142 -5.3482 -0.4420 14 6 3.5785 -6.5643 0.2462 15 6 3.1783 -6.8687 1.5494 16 7 3.6563 -7.9236 2.1688 17 6 4.5357 -8.7161 1.5459 18 6 5.0664 -9.8522 2.1814 19 6 5.9596 -10.6385 1.5215 20 6 6.3590 -10.3346 0.2209 21 6 5.8668 -9.2435 -0.4258 22 6 4.9410 -8.4077 0.2230 23 7 4.4417 -7.3263 -0.3855 24 6 3.3355 -4.0248 0.2755 25 1 -0.4850 0.8400 -0.0004 26 1 0.8486 -5.2845 -0.9077 27 1 1.2261 -5.4909 0.8590 28 1 3.2241 -5.3295 -1.5115 29 1 2.4674 -6.2302 2.0527 30 1 4.7666 -10.0999 3.1889 31 1 6.3651 -11.5108 2.0126 32 1 7.0729 -10.9725 -0.2792 33 1 6.1857 -9.0204 -1.4332 34 1 3.5491 -4.1417 1.3379 35 1 4.0728 -3.4119 -0.2429 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153895253.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:17 Heat of formation + Delta-G solvation = 69.978193 kcal Electronic energy + Delta-G solvation = -20573.844539 eV Core-core repulsion = 17345.261726 eV Total energy + Delta-G solvation = -3228.582813 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.60955 -39.22454 -37.47766 -35.81931 -34.85392 -32.53703 -31.34176 -30.78343 -28.49238 -26.42561 -25.50434 -24.86045 -24.21454 -22.41900 -21.15923 -19.11014 -18.40446 -18.06287 -17.04966 -16.54410 -15.63152 -15.30119 -15.24866 -15.02913 -14.57541 -14.32951 -13.94203 -13.85222 -12.65483 -12.52911 -12.40658 -12.26708 -12.01594 -11.95681 -11.74924 -11.71107 -11.59466 -11.31302 -11.14383 -10.91498 -10.70231 -10.37046 -10.16220 -9.15930 -8.98178 -8.89484 -8.74509 -7.72052 -7.38794 -6.28534 -4.69416 0.06065 0.39969 1.78555 2.59260 3.12426 3.18744 3.21437 3.75987 3.84187 3.96039 4.00884 4.13850 4.23558 4.47253 4.56248 4.64432 4.86852 4.88736 4.93936 5.01036 5.22691 5.38016 5.57819 5.66283 5.68910 5.81931 5.86690 5.88255 6.05196 6.09609 6.11271 6.12288 6.47181 6.58587 6.62485 7.19477 7.38942 7.66047 8.02846 8.38137 8.96448 9.46193 10.49924 10.68641 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.039293 B = 0.003185 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.421084 B = 8790.159117 C = 8972.415679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.088 3.912 3 Si 0.911 3.089 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.538 4.538 8 H 0.069 0.931 9 C 0.581 3.419 10 O -0.574 6.574 11 N -0.660 5.660 12 C 0.116 3.884 13 C -0.083 4.083 14 C 0.131 3.869 15 C 0.089 3.911 16 N -0.424 5.424 17 C 0.067 3.933 18 C -0.080 4.080 19 C -0.107 4.107 20 C -0.103 4.103 21 C -0.083 4.083 22 C 0.083 3.917 23 N -0.426 5.426 24 C 0.129 3.871 25 H 0.271 0.729 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.118 0.882 29 H 0.179 0.821 30 H 0.138 0.862 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.139 0.861 34 H 0.067 0.933 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.930 -18.213 2.458 22.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.575 4.575 8 H 0.088 0.912 9 C 0.389 3.611 10 O -0.456 6.456 11 N -0.401 5.401 12 C -0.009 4.009 13 C -0.103 4.103 14 C -0.025 4.025 15 C -0.087 4.087 16 N -0.138 5.138 17 C -0.057 4.057 18 C -0.100 4.100 19 C -0.127 4.127 20 C -0.123 4.123 21 C -0.103 4.103 22 C -0.042 4.042 23 N -0.140 5.140 24 C 0.004 3.996 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.137 0.863 29 H 0.195 0.805 30 H 0.156 0.844 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.157 0.843 34 H 0.085 0.915 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 12.093 -18.068 2.308 21.863 hybrid contribution 0.513 0.753 0.087 0.916 sum 12.605 -17.314 2.395 21.550 Atomic orbital electron populations 1.69980 1.07164 1.27673 1.34990 1.25718 0.94635 1.00369 0.92471 0.86341 0.80018 0.81028 0.79124 1.19523 1.20450 1.18914 1.20784 0.94261 0.88918 1.53493 0.91240 1.18063 0.86011 0.80654 0.76384 1.90619 1.15589 1.85428 1.53944 1.50271 1.08752 1.03855 1.77243 1.22833 0.93158 0.84547 1.00329 1.22439 0.97120 0.89391 1.01388 1.22552 0.92022 0.95455 0.92506 1.24026 0.97740 0.93996 0.92940 1.68754 1.07026 1.03214 1.34767 1.19648 0.96677 0.96717 0.92641 1.20803 0.96275 0.92519 1.00377 1.20973 0.97132 0.99696 0.94868 1.20983 0.99503 0.96885 0.94890 1.20826 0.95341 0.93628 1.00487 1.19652 0.97864 0.94248 0.92400 1.68585 1.07775 1.02659 1.35008 1.22783 0.87969 0.90521 0.98364 0.91855 0.90693 0.91520 0.86349 0.80452 0.84447 0.84902 0.84875 0.84346 0.91485 0.90273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.91 11.91 55.55 0.66 -22.25 16 2 C 0.09 2.44 5.48 -17.36 -0.10 2.34 16 3 Si 0.91 19.97 29.56 -169.99 -5.03 14.95 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.54 -15.09 9.32 -35.63 -0.33 -15.42 16 8 H 0.07 1.79 7.70 -52.49 -0.40 1.39 16 9 C 0.58 16.56 7.95 -12.99 -0.10 16.45 16 10 O -0.57 -18.70 15.84 5.20 0.08 -18.62 16 11 N -0.66 -14.64 3.61 -179.86 -0.65 -15.29 16 12 C 0.12 2.03 8.20 -2.96 -0.02 2.01 16 13 C -0.08 -1.25 4.33 -90.86 -0.39 -1.64 16 14 C 0.13 1.86 6.21 -82.27 -0.51 1.34 16 15 C 0.09 1.20 9.83 -17.22 -0.17 1.03 16 16 N -0.42 -5.95 10.47 -10.80 -0.11 -6.06 16 17 C 0.07 0.88 6.59 -84.80 -0.56 0.32 16 18 C -0.08 -0.80 9.99 -39.48 -0.39 -1.20 16 19 C -0.11 -0.81 9.95 -39.93 -0.40 -1.21 16 20 C -0.10 -0.79 9.95 -39.93 -0.40 -1.18 16 21 C -0.08 -0.85 9.99 -39.48 -0.39 -1.24 16 22 C 0.08 1.10 6.59 -84.80 -0.56 0.54 16 23 N -0.43 -6.21 10.38 -7.06 -0.07 -6.29 16 24 C 0.13 2.20 7.95 -2.84 -0.02 2.17 16 25 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 26 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 27 H 0.07 1.04 6.23 -51.93 -0.32 0.71 16 28 H 0.12 1.78 8.14 -51.93 -0.42 1.36 16 29 H 0.18 2.14 6.56 -52.49 -0.34 1.80 16 30 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 32 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 33 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 34 H 0.07 1.03 7.77 -51.93 -0.40 0.63 16 35 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 308.62 15.07 4.65 4.65 Total: -1.00 -35.84 308.62 -8.39 -44.23 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -3.57 Total: 0.36 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: -4.35 Total: 4.32 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: -0.17 Total: -49.88 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: 0.08 Total: -18.62 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.03 Total: 14.95 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -35.84 -8.39 -44.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153895253.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.206 kcal (2) G-P(sol) polarization free energy of solvation -35.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds