Wall clock time and date at job start Tue Mar 31 2020 05:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86805 * 119.99817 * 2 1 4 4 H 1.48502 * 109.46958 * 264.99366 * 3 2 1 5 5 H 1.48503 * 109.46752 * 24.98992 * 3 2 1 6 6 H 1.48491 * 109.47069 * 144.99056 * 3 2 1 7 7 C 1.40047 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99758 * 186.80046 * 7 2 1 9 9 C 1.46374 * 119.99915 * 6.80511 * 7 2 1 10 10 O 1.21688 * 120.00035 * 6.74812 * 9 7 2 11 11 N 1.34775 * 119.99718 * 186.74818 * 9 7 2 12 12 C 1.47587 * 134.49345 * 180.02562 * 11 9 7 13 13 C 1.53946 * 86.11945 * 155.35692 * 12 11 9 14 14 C 1.50699 * 113.74062 * 137.95113 * 13 12 11 15 15 C 1.39684 * 119.64632 * 324.06888 * 14 13 12 16 16 N 1.31337 * 120.71208 * 179.97438 * 15 14 13 17 17 C 1.33761 * 119.70465 * 359.97438 * 16 15 14 18 18 C 1.40585 * 121.09931 * 179.97438 * 17 16 15 19 19 C 1.36063 * 119.70922 * 180.02562 * 18 17 16 20 20 C 1.39407 * 120.97263 * 0.02562 * 19 18 17 21 21 C 1.36062 * 120.96877 * 359.97438 * 20 19 18 22 22 C 1.40590 * 119.71050 * 359.97438 * 21 20 19 23 23 N 1.31328 * 119.64425 * 144.09032 * 14 13 12 24 24 C 1.47818 * 134.46076 * 359.86652 * 11 9 7 25 25 H 0.96999 * 119.99828 * 0.02562 * 1 2 3 26 26 H 1.09003 * 113.76813 * 41.05442 * 12 11 9 27 27 H 1.08999 * 113.76522 * 269.65856 * 12 11 9 28 28 H 1.08998 * 113.74304 * 269.15380 * 13 12 11 29 29 H 1.08001 * 119.64189 * 0.02562 * 15 14 13 30 30 H 1.07998 * 120.14658 * 0.02562 * 18 17 16 31 31 H 1.08009 * 119.51701 * 180.02562 * 19 18 17 32 32 H 1.08004 * 119.51674 * 179.71944 * 20 19 18 33 33 H 1.07997 * 120.14562 * 179.97438 * 21 20 19 34 34 H 1.08994 * 113.76942 * 90.37612 * 24 11 9 35 35 H 1.09003 * 113.83501 * 318.91881 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.5940 1.9854 -1.3948 5 1 1.3891 2.6809 0.5915 6 1 3.4813 1.4732 0.8032 7 6 2.0070 -1.2128 0.0005 8 1 3.0813 -1.2160 0.1113 9 6 1.2829 -2.4761 -0.1491 10 8 0.0915 -2.4688 -0.3965 11 7 1.9358 -3.6472 -0.0129 12 6 1.5411 -5.0670 -0.0945 13 6 3.0142 -5.3482 -0.4420 14 6 3.5785 -6.5643 0.2462 15 6 3.1783 -6.8687 1.5494 16 7 3.6563 -7.9236 2.1688 17 6 4.5357 -8.7161 1.5459 18 6 5.0664 -9.8522 2.1814 19 6 5.9596 -10.6385 1.5215 20 6 6.3590 -10.3346 0.2209 21 6 5.8668 -9.2435 -0.4258 22 6 4.9410 -8.4077 0.2230 23 7 4.4417 -7.3263 -0.3855 24 6 3.3355 -4.0248 0.2755 25 1 -0.4850 0.8400 -0.0004 26 1 0.8486 -5.2845 -0.9077 27 1 1.2261 -5.4909 0.8590 28 1 3.2241 -5.3295 -1.5115 29 1 2.4674 -6.2302 2.0527 30 1 4.7666 -10.0999 3.1889 31 1 6.3651 -11.5108 2.0126 32 1 7.0729 -10.9725 -0.2792 33 1 6.1857 -9.0204 -1.4332 34 1 3.5491 -4.1417 1.3379 35 1 4.0728 -3.4119 -0.2429 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153895253.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:16 Heat of formation + Delta-G solvation = 44.218801 kcal Electronic energy + Delta-G solvation = -20574.961550 eV Core-core repulsion = 17345.261726 eV Total energy + Delta-G solvation = -3229.699824 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.58235 -40.66993 -38.57633 -37.66319 -35.85586 -34.66034 -32.49455 -31.56088 -30.05853 -28.18325 -26.96831 -25.92859 -25.43477 -23.24446 -22.52663 -20.77037 -19.32455 -19.08062 -18.70191 -17.80888 -17.59170 -16.48520 -16.29717 -16.14501 -15.84844 -15.63880 -15.34119 -14.75211 -14.36376 -14.18210 -13.67551 -13.55645 -13.17677 -13.09762 -12.92385 -12.82266 -12.74669 -12.71713 -12.64368 -12.47234 -12.45049 -12.02831 -11.78419 -10.94655 -10.18334 -9.91732 -9.84849 -9.54688 -9.22560 -8.35313 -6.86723 -0.80894 -0.50729 0.90343 1.39402 1.41761 1.56139 1.78096 2.18635 2.40336 2.50528 2.85284 2.93157 3.09461 3.22800 3.52135 3.56823 3.72189 3.82402 4.04333 4.08444 4.12714 4.26413 4.41701 4.46726 4.52101 4.62076 4.69184 4.88873 4.94853 5.05527 5.19172 5.21019 5.22866 5.30454 5.38528 5.76974 5.95054 6.21946 6.39741 6.66692 6.84381 7.50506 8.40631 8.63178 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.039293 B = 0.003185 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.421084 B = 8790.159117 C = 8972.415679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.030 3.970 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.248 1.248 7 C -0.565 4.565 8 H 0.086 0.914 9 C 0.564 3.436 10 O -0.633 6.633 11 N -0.676 5.676 12 C 0.112 3.888 13 C -0.052 4.052 14 C 0.119 3.881 15 C 0.079 3.921 16 N -0.438 5.438 17 C 0.049 3.951 18 C -0.099 4.099 19 C -0.085 4.085 20 C -0.083 4.083 21 C -0.102 4.102 22 C 0.060 3.940 23 N -0.439 5.439 24 C 0.130 3.870 25 H 0.277 0.723 26 H 0.064 0.936 27 H 0.088 0.912 28 H 0.118 0.882 29 H 0.185 0.815 30 H 0.150 0.850 31 H 0.175 0.825 32 H 0.174 0.826 33 H 0.148 0.852 34 H 0.087 0.913 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.300 -20.072 3.014 26.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.186 4.186 3 Si 0.818 3.182 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.171 1.171 7 C -0.601 4.601 8 H 0.104 0.896 9 C 0.372 3.628 10 O -0.520 6.520 11 N -0.415 5.415 12 C -0.012 4.012 13 C -0.072 4.072 14 C -0.036 4.036 15 C -0.096 4.096 16 N -0.151 5.151 17 C -0.076 4.076 18 C -0.118 4.118 19 C -0.105 4.105 20 C -0.103 4.103 21 C -0.121 4.121 22 C -0.065 4.065 23 N -0.154 5.154 24 C 0.006 3.994 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.106 0.894 28 H 0.136 0.864 29 H 0.202 0.798 30 H 0.168 0.832 31 H 0.192 0.808 32 H 0.192 0.808 33 H 0.166 0.834 34 H 0.105 0.895 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 15.512 -19.981 2.877 25.459 hybrid contribution -0.387 1.005 -0.064 1.079 sum 15.125 -18.976 2.813 24.429 Atomic orbital electron populations 1.70145 1.09613 1.29271 1.36277 1.26996 0.95520 1.04966 0.91073 0.85016 0.78695 0.74843 0.79649 1.18645 1.19608 1.17108 1.21294 0.95214 0.89731 1.53895 0.89576 1.18354 0.85596 0.82740 0.76137 1.90554 1.17937 1.87054 1.56489 1.50033 1.11272 1.04227 1.75944 1.23079 0.94964 0.81904 1.01239 1.21950 0.94845 0.89296 1.01132 1.22169 0.93196 0.95453 0.92802 1.24045 0.98290 0.94441 0.92803 1.68751 1.07648 1.03523 1.35220 1.20115 0.96812 0.97638 0.93003 1.21094 0.97264 0.92134 1.01312 1.21504 0.94813 0.99662 0.94522 1.21502 0.98431 0.95665 0.94672 1.21095 0.95381 0.94320 1.01289 1.20080 0.98956 0.94481 0.92988 1.68484 1.07920 1.03342 1.35624 1.23037 0.85191 0.91222 0.99942 0.91337 0.91716 0.89384 0.86425 0.79803 0.83238 0.80803 0.80847 0.83402 0.89484 0.89842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.85 11.91 21.84 0.26 -50.59 16 2 C 0.03 1.66 5.48 85.30 0.47 2.13 16 3 Si 1.00 41.14 29.56 68.60 2.03 43.17 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 6 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 7 C -0.57 -32.44 9.32 24.83 0.23 -32.21 16 8 H 0.09 4.46 7.70 -2.91 -0.02 4.44 16 9 C 0.56 33.51 7.95 86.36 0.69 34.20 16 10 O -0.63 -43.58 15.84 -4.31 -0.07 -43.65 16 11 N -0.68 -30.93 3.61 -841.16 -3.04 -33.97 16 12 C 0.11 4.05 8.20 86.48 0.71 4.76 16 13 C -0.05 -1.57 4.33 -10.89 -0.05 -1.62 16 14 C 0.12 3.38 6.21 42.98 0.27 3.65 16 15 C 0.08 2.14 9.83 85.12 0.84 2.98 16 16 N -0.44 -12.11 10.47 -188.08 -1.97 -14.08 16 17 C 0.05 1.21 6.59 40.29 0.27 1.48 16 18 C -0.10 -1.70 9.99 22.34 0.22 -1.48 16 19 C -0.09 -0.90 9.95 22.05 0.22 -0.68 16 20 C -0.08 -0.89 9.95 22.05 0.22 -0.67 16 21 C -0.10 -1.81 9.99 22.34 0.22 -1.59 16 22 C 0.06 1.51 6.59 40.29 0.27 1.78 16 23 N -0.44 -12.64 10.38 -176.24 -1.83 -14.47 16 24 C 0.13 4.43 7.95 86.43 0.69 5.11 16 25 H 0.28 15.41 8.29 -92.71 -0.77 14.64 16 26 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.09 2.80 6.23 -2.39 -0.01 2.78 16 28 H 0.12 3.58 8.14 -2.39 -0.02 3.56 16 29 H 0.19 4.48 6.56 -2.91 -0.02 4.46 16 30 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 31 H 0.17 0.46 8.06 -2.91 -0.02 0.44 16 32 H 0.17 0.52 8.06 -2.91 -0.02 0.50 16 33 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 34 H 0.09 2.63 7.77 -2.39 -0.02 2.61 16 35 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -82.93 308.62 1.76 -81.16 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 1.12 Total: 14.59 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: 5.25 Total: 17.83 kcal Atomic # 7 Polarization: -106.52 SS G_CDS: -6.58 Total: -113.10 kcal Atomic # 8 Polarization: -43.58 SS G_CDS: -0.07 Total: -43.65 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -82.93 1.76 -81.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153895253.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.381 kcal (2) G-P(sol) polarization free energy of solvation -82.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds