Wall clock time and date at job start Tue Mar 31 2020 05:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34229 * 117.00303 * 2 1 4 4 O 1.20817 * 119.99849 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00021 * 180.02562 * 3 2 1 6 6 H 1.09006 * 109.47034 * 299.99693 * 5 3 2 7 7 C 1.53000 * 109.47465 * 59.99832 * 5 3 2 8 8 O 1.42901 * 109.46603 * 55.00282 * 7 5 3 9 9 N 1.46503 * 109.47242 * 180.02562 * 5 3 2 10 10 C 1.39883 * 120.00181 * 154.99549 * 9 5 3 11 11 C 1.39096 * 119.96280 * 0.25967 * 10 9 5 12 12 C 1.38618 * 120.46628 * 180.30248 * 11 10 9 13 13 C 1.37573 * 120.38887 * 359.71941 * 12 11 10 14 14 C 1.40796 * 119.90668 * 359.97438 * 13 12 11 15 15 C 1.41325 * 120.22894 * 179.97438 * 14 13 12 16 16 H 1.07991 * 119.99647 * 204.59952 * 15 14 13 17 17 C 1.39924 * 119.99575 * 24.60082 * 15 14 13 18 18 N 1.30851 * 120.00486 * 17.79756 * 17 15 14 19 19 Si 1.86806 * 119.99610 * 197.79088 * 17 15 14 20 20 H 1.48505 * 109.47229 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46813 * 120.00463 * 19 17 15 22 22 H 1.48501 * 109.47154 * 240.00324 * 19 17 15 23 23 C 1.38595 * 119.96153 * 179.97438 * 10 9 5 24 24 F 1.35104 * 120.18611 * 359.97438 * 23 10 9 25 25 H 1.09001 * 109.47288 * 299.99835 * 1 2 3 26 26 H 1.09006 * 109.47427 * 59.99589 * 1 2 3 27 27 H 1.08998 * 109.47302 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47292 * 175.00002 * 7 5 3 29 29 H 1.08994 * 109.47248 * 295.00461 * 7 5 3 30 30 H 0.96700 * 113.99685 * 179.97438 * 8 7 5 31 31 H 0.96998 * 119.99644 * 335.00152 * 9 5 3 32 32 H 1.08000 * 119.76772 * 0.02562 * 11 10 9 33 33 H 1.08006 * 119.80991 * 179.69621 * 12 11 10 34 34 H 1.08003 * 120.05245 * 180.02562 * 13 12 11 35 35 H 0.96996 * 120.00274 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9564 0.7805 0.8892 7 6 4.1129 0.5814 -1.2501 8 8 3.5119 1.1535 -2.4136 9 7 3.9818 2.6796 0.0002 10 6 5.2331 3.0387 0.5119 11 6 6.0846 2.0606 1.0150 12 6 7.3244 2.4054 1.5303 13 6 7.7307 3.7197 1.5454 14 6 6.8843 4.7220 1.0344 15 6 7.2946 6.0743 1.0470 16 1 6.5564 6.8626 1.0425 17 6 8.6572 6.3918 1.0651 18 7 9.5434 5.4914 0.7243 19 14 9.2112 8.1011 1.5759 20 1 8.0234 8.9268 1.9117 21 1 10.0956 8.0003 2.7645 22 1 9.9551 8.7351 0.4578 23 6 5.6256 4.3679 0.5117 24 9 4.8029 5.3190 0.0179 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 5.1937 0.7150 -1.2964 29 1 3.8798 -0.4825 -1.2067 30 1 3.8129 0.7616 -3.2448 31 1 3.3891 3.3608 -0.3542 32 1 5.7758 1.0257 1.0081 33 1 7.9751 1.6378 1.9227 34 1 8.6980 3.9822 1.9478 35 1 10.4880 5.7114 0.7373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163798791.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:19 Heat of formation + Delta-G solvation = -154.486892 kcal Electronic energy + Delta-G solvation = -22213.345637 eV Core-core repulsion = 18511.967311 eV Total energy + Delta-G solvation = -3701.378326 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.105 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -47.05657 -40.57414 -38.03998 -36.82695 -36.43148 -34.85700 -33.22617 -30.32467 -29.57810 -27.77065 -26.72589 -25.32943 -23.83843 -21.45691 -20.77816 -19.97311 -18.21248 -17.25063 -17.16319 -17.05982 -16.35302 -15.92216 -15.38337 -15.07526 -14.88813 -14.34985 -14.15297 -13.82256 -13.53071 -13.44413 -12.99733 -12.90854 -12.51779 -12.28085 -11.84408 -11.75871 -11.61416 -11.13958 -11.11196 -10.88125 -10.85998 -10.48758 -10.44301 -10.00872 -9.86794 -9.55755 -9.42611 -8.93512 -7.42373 -6.85610 -6.36050 -4.42704 2.23443 2.53465 2.68457 2.98067 3.06672 3.13306 3.18449 3.89248 3.98057 4.23387 4.55553 4.70066 4.99471 5.03958 5.11491 5.33427 5.37576 5.42266 5.56039 5.71289 5.92997 6.14689 6.30573 6.57221 6.79576 6.91708 7.13682 7.21607 7.51101 7.61973 7.67525 7.75235 7.97997 8.07057 8.25328 8.41718 8.60215 8.76448 8.91438 10.10137 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.032476 B = 0.004124 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.967198 B = 6787.896194 C = 7094.743888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.359 6.359 3 C 0.467 3.533 4 O -0.496 6.496 5 C 0.177 3.823 6 H 0.127 0.873 7 C 0.064 3.936 8 O -0.567 6.567 9 N -0.736 5.736 10 C 0.206 3.794 11 C -0.294 4.294 12 C -0.076 4.076 13 C -0.182 4.182 14 C 0.118 3.882 15 C -0.450 4.450 16 H 0.083 0.917 17 C 0.078 3.922 18 N -0.784 5.784 19 Si 0.911 3.089 20 H -0.259 1.259 21 H -0.270 1.270 22 H -0.273 1.273 23 C -0.089 4.089 24 F -0.165 7.165 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.379 0.621 31 H 0.406 0.594 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.123 0.877 35 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.899 -11.353 -1.709 13.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.275 6.275 3 C 0.309 3.691 4 O -0.382 6.382 5 C 0.068 3.932 6 H 0.144 0.856 7 C -0.016 4.016 8 O -0.372 6.372 9 N -0.372 5.372 10 C 0.107 3.893 11 C -0.317 4.317 12 C -0.095 4.095 13 C -0.202 4.202 14 C 0.114 3.886 15 C -0.479 4.479 16 H 0.101 0.899 17 C -0.141 4.141 18 N -0.409 5.409 19 Si 0.735 3.265 20 H -0.182 1.182 21 H -0.195 1.195 22 H -0.199 1.199 23 C -0.113 4.113 24 F -0.144 7.144 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.118 0.882 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.226 0.774 31 H 0.243 0.757 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.141 0.859 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.212 -10.850 -1.279 13.667 hybrid contribution 0.061 0.747 -0.478 0.889 sum -8.151 -10.103 -1.757 13.100 Atomic orbital electron populations 1.23235 0.76454 1.03442 1.02590 1.86465 1.23336 1.33333 1.84411 1.23771 0.91945 0.81482 0.71951 1.90651 1.66640 1.36369 1.44515 1.20231 0.86221 0.87388 0.99360 0.85614 1.22737 0.98243 0.95498 0.85145 1.86512 1.69423 1.65058 1.16216 1.44014 1.17860 1.04421 1.70908 1.17386 0.84630 0.92025 0.95256 1.19715 0.97604 0.95751 1.18632 1.20445 0.94537 0.95978 0.98553 1.21044 1.01547 0.91234 1.06386 1.17423 0.88617 0.94392 0.88185 1.19574 0.92142 0.92726 1.43435 0.89898 1.25925 0.96506 0.99552 0.92154 1.69851 1.03086 1.35512 1.32420 0.86205 0.79464 0.81762 0.79039 1.18220 1.19550 1.19856 1.17256 0.94585 0.82878 1.16607 1.91230 1.71871 1.64172 1.87131 0.91972 0.91911 0.88172 0.90977 0.92317 0.77390 0.75719 0.88705 0.88796 0.85931 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.62 10.49 -39.26 -0.41 -5.04 16 3 C 0.47 7.40 6.84 36.00 0.25 7.65 16 4 O -0.50 -9.35 15.59 -18.74 -0.29 -9.64 16 5 C 0.18 2.78 2.57 -69.08 -0.18 2.60 16 6 H 0.13 1.77 6.49 -51.93 -0.34 1.43 16 7 C 0.06 0.84 6.71 37.16 0.25 1.09 16 8 O -0.57 -7.92 13.09 -35.23 -0.46 -8.38 16 9 N -0.74 -14.66 5.08 -53.26 -0.27 -14.93 16 10 C 0.21 4.68 6.64 -83.73 -0.56 4.12 16 11 C -0.29 -6.16 8.84 -39.12 -0.35 -6.51 16 12 C -0.08 -1.68 10.01 -39.68 -0.40 -2.08 16 13 C -0.18 -4.59 8.69 -38.86 -0.34 -4.93 16 14 C 0.12 3.19 5.58 -106.78 -0.60 2.59 16 15 C -0.45 -12.23 8.78 -37.78 -0.33 -12.56 16 16 H 0.08 2.26 7.73 -52.49 -0.41 1.85 16 17 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 18 N -0.78 -19.84 10.96 55.55 0.61 -19.23 16 19 Si 0.91 18.67 29.60 -169.99 -5.03 13.64 16 20 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 21 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 22 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 23 C -0.09 -2.32 7.31 -38.48 -0.28 -2.61 16 24 F -0.16 -4.36 16.08 2.25 0.04 -4.33 16 25 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 26 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 27 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 1.01 7.78 -51.93 -0.40 0.60 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.38 3.40 9.12 45.56 0.42 3.82 16 31 H 0.41 8.73 7.27 -40.82 -0.30 8.43 16 32 H 0.09 1.66 6.16 -52.49 -0.32 1.33 16 33 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 34 H 0.12 3.16 6.16 -52.48 -0.32 2.84 16 35 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 LS Contribution 309.48 15.07 4.66 4.66 Total: -1.00 -31.44 309.48 -5.63 -37.07 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -2.92 Total: 13.52 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -1.55 Total: -7.34 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.34 Total: -34.17 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -1.17 Total: -23.06 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.04 Total: -4.33 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.44 -5.63 -37.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163798791.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.417 kcal (2) G-P(sol) polarization free energy of solvation -31.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds