Wall clock time and date at job start Tue Mar 31 2020 05:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30863 * 1 3 3 Si 1.86801 * 119.99809 * 2 1 4 4 H 1.48506 * 109.46859 * 90.00171 * 3 2 1 5 5 H 1.48495 * 109.46875 * 210.00012 * 3 2 1 6 6 H 1.48501 * 109.47191 * 330.00285 * 3 2 1 7 7 C 1.39942 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00677 * 21.76180 * 7 2 1 9 9 C 1.41078 * 119.99625 * 201.76852 * 7 2 1 10 10 C 1.40731 * 120.30038 * 24.79699 * 9 7 2 11 11 C 1.36466 * 119.94056 * 180.02562 * 10 9 7 12 12 C 1.38870 * 120.58225 * 0.02562 * 11 10 9 13 13 C 1.38217 * 120.61421 * 0.02562 * 12 11 10 14 14 C 1.38657 * 120.03005 * 359.68350 * 13 12 11 15 15 N 1.39115 * 120.28351 * 180.31995 * 14 13 12 16 16 C 1.34781 * 119.99930 * 20.14355 * 15 14 13 17 17 O 1.21586 * 120.00140 * 5.71089 * 16 15 14 18 18 N 1.34783 * 119.99974 * 185.71109 * 16 15 14 19 19 C 1.39954 * 119.99824 * 184.50250 * 18 16 15 20 20 C 1.39269 * 120.49091 * 324.07805 * 19 18 16 21 21 C 1.38505 * 118.36005 * 179.71373 * 20 19 18 22 22 C 1.38273 * 119.23466 * 0.58106 * 21 20 19 23 23 N 1.31850 * 120.91944 * 359.67878 * 22 21 20 24 24 C 1.31819 * 121.79361 * 0.02763 * 23 22 21 25 25 H 0.97002 * 119.99704 * 174.95170 * 1 2 3 26 26 H 1.07996 * 120.03325 * 359.97438 * 10 9 7 27 27 H 1.08006 * 119.70926 * 179.97438 * 11 10 9 28 28 H 1.07997 * 119.69074 * 180.02562 * 12 11 10 29 29 H 1.07997 * 119.98699 * 180.02562 * 13 12 11 30 30 H 0.97003 * 120.00493 * 200.14669 * 15 14 13 31 31 H 0.97008 * 119.99727 * 4.50648 * 18 16 15 32 32 H 1.08003 * 120.82255 * 0.02562 * 20 19 18 33 33 H 1.08002 * 120.38156 * 180.28162 * 21 20 19 34 34 H 1.07997 * 119.53561 * 179.70409 * 22 21 20 35 35 H 1.08005 * 119.66744 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.4901 2.0464 1.4002 5 1 3.5401 1.4402 -0.7000 6 1 1.4400 2.6527 -0.7000 7 6 2.0083 -1.2120 -0.0005 8 1 1.5261 -2.1138 -0.3477 9 6 3.3436 -1.2557 0.4526 10 6 3.8179 -0.2891 1.3588 11 6 5.1111 -0.3381 1.7919 12 6 5.9683 -1.3354 1.3458 13 6 5.5276 -2.2959 0.4550 14 6 4.2169 -2.2738 0.0030 15 7 3.7659 -3.2418 -0.8885 16 6 4.4291 -4.4090 -1.0082 17 8 5.3585 -4.6591 -0.2653 18 7 4.0621 -5.2990 -1.9516 19 6 4.6880 -6.5491 -2.0154 20 6 6.0443 -6.6760 -1.7257 21 6 6.6172 -7.9350 -1.7968 22 6 5.8335 -9.0140 -2.1619 23 7 4.5529 -8.8595 -2.4354 24 6 3.9671 -7.6803 -2.3742 25 1 -0.4850 -0.8368 -0.0739 26 1 3.1594 0.4912 1.7106 27 1 5.4713 0.4059 2.4871 28 1 6.9889 -1.3607 1.6983 29 1 6.2028 -3.0671 0.1150 30 1 2.9740 -3.0768 -1.4240 31 1 3.3641 -5.0729 -2.5863 32 1 6.6336 -5.8148 -1.4474 33 1 7.6653 -8.0715 -1.5743 34 1 6.2764 -9.9971 -2.2236 35 1 2.9158 -7.5930 -2.6058 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185692204.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:14 Heat of formation + Delta-G solvation = 37.518135 kcal Electronic energy + Delta-G solvation = -20993.769762 eV Core-core repulsion = 17763.779375 eV Total energy + Delta-G solvation = -3229.990387 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.88707 -39.59661 -37.75379 -35.03962 -34.17504 -33.81317 -32.11936 -30.33991 -30.14694 -28.26569 -24.91075 -23.88927 -23.45346 -22.11706 -20.87081 -20.09992 -18.46272 -18.10771 -17.67701 -16.97917 -16.24843 -16.03810 -15.03630 -14.92943 -14.53128 -14.17851 -14.08136 -13.78318 -13.42582 -13.06751 -12.95024 -12.60101 -12.27744 -12.12569 -11.82277 -11.07469 -10.90690 -10.83765 -10.56029 -9.98232 -9.90197 -9.74117 -9.56701 -9.52909 -9.22750 -8.98026 -8.36612 -7.81864 -7.44538 -7.08357 -4.61579 1.01025 1.27224 2.45799 2.65077 2.74942 3.14200 3.26396 3.41464 3.50484 3.82347 3.92662 4.35131 4.46919 4.51603 4.81052 4.90651 5.07417 5.29901 5.34180 5.52626 6.00322 6.06220 6.08215 6.15580 6.26445 6.31045 6.54853 6.74355 6.80470 6.82630 7.01650 7.27986 7.41097 7.46196 7.63853 7.79302 7.85881 7.88056 8.20766 8.29633 8.43644 8.61618 8.83469 9.87428 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.026860 B = 0.004255 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.211260 B = 6578.806168 C = 7444.828801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.046 3.954 3 Si 1.076 2.924 4 H -0.275 1.275 5 H -0.263 1.263 6 H -0.291 1.291 7 C -0.523 4.523 8 H 0.074 0.926 9 C 0.088 3.912 10 C -0.236 4.236 11 C -0.086 4.086 12 C -0.230 4.230 13 C -0.090 4.090 14 C 0.034 3.966 15 N -0.643 5.643 16 C 0.692 3.308 17 O -0.568 6.568 18 N -0.687 5.687 19 C 0.127 3.873 20 C -0.079 4.079 21 C -0.153 4.153 22 C 0.069 3.931 23 N -0.468 5.468 24 C 0.068 3.932 25 H 0.286 0.714 26 H 0.109 0.891 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.130 0.870 30 H 0.405 0.595 31 H 0.408 0.592 32 H 0.152 0.848 33 H 0.136 0.864 34 H 0.154 0.846 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.992 -8.787 -5.948 12.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.174 4.174 3 Si 0.902 3.098 4 H -0.202 1.202 5 H -0.187 1.187 6 H -0.219 1.219 7 C -0.552 4.552 8 H 0.092 0.908 9 C 0.084 3.916 10 C -0.256 4.256 11 C -0.105 4.105 12 C -0.250 4.250 13 C -0.110 4.110 14 C -0.060 4.060 15 N -0.286 5.286 16 C 0.394 3.606 17 O -0.445 6.445 18 N -0.335 5.335 19 C 0.029 3.971 20 C -0.107 4.107 21 C -0.173 4.173 22 C -0.089 4.089 23 N -0.176 5.176 24 C -0.092 4.092 25 H 0.097 0.903 26 H 0.127 0.873 27 H 0.113 0.887 28 H 0.114 0.886 29 H 0.147 0.853 30 H 0.241 0.759 31 H 0.244 0.756 32 H 0.169 0.831 33 H 0.154 0.846 34 H 0.172 0.828 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.961 -8.079 -5.476 11.988 hybrid contribution -0.322 -0.842 -0.211 0.926 sum 6.639 -8.921 -5.686 12.490 Atomic orbital electron populations 1.70578 1.08106 1.33156 1.31323 1.27277 0.95514 1.04551 0.90092 0.83559 0.75479 0.72864 0.77854 1.20229 1.18738 1.21850 1.20364 0.96926 0.97099 1.40794 0.90813 1.17431 0.92118 0.91254 0.90836 1.20701 0.96683 1.03754 1.04436 1.20393 0.94066 0.97324 0.98709 1.20328 0.98893 0.99639 1.06167 1.21098 0.93917 0.98380 0.97601 1.17487 0.93179 0.95160 1.00195 1.42029 1.30404 1.13795 1.42399 1.15974 0.83444 0.80216 0.80987 1.90811 1.30961 1.76986 1.45772 1.42608 1.42337 1.13995 1.34555 1.18590 0.92365 0.85400 1.00729 1.21843 0.93197 0.99103 0.96569 1.22095 1.01633 0.93007 1.00558 1.22651 0.89716 0.99160 0.97342 1.67615 1.11992 1.24494 1.13537 1.22573 0.99793 0.86383 1.00464 0.90253 0.87308 0.88738 0.88615 0.85275 0.75931 0.75607 0.83078 0.84613 0.82849 0.82737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.51 13.66 55.55 0.76 -19.75 16 2 C 0.05 1.14 5.38 -17.33 -0.09 1.04 16 3 Si 1.08 23.18 24.97 -169.99 -4.25 18.94 16 4 H -0.28 -5.71 6.35 56.52 0.36 -5.35 16 5 H -0.26 -5.63 7.09 56.52 0.40 -5.23 16 6 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.52 -12.93 8.79 -37.87 -0.33 -13.26 16 8 H 0.07 1.81 7.15 -52.49 -0.38 1.44 16 9 C 0.09 2.15 5.22 -106.65 -0.56 1.59 16 10 C -0.24 -5.57 7.34 -39.28 -0.29 -5.86 16 11 C -0.09 -1.87 9.97 -39.99 -0.40 -2.26 16 12 C -0.23 -4.96 10.04 -39.36 -0.39 -5.35 16 13 C -0.09 -2.01 8.77 -39.43 -0.35 -2.36 16 14 C 0.03 0.77 6.53 -83.17 -0.54 0.23 16 15 N -0.64 -12.35 5.18 -13.83 -0.07 -12.42 16 16 C 0.69 12.44 8.25 -86.91 -0.72 11.72 16 17 O -0.57 -11.73 10.81 5.29 0.06 -11.67 16 18 N -0.69 -9.34 5.35 -14.13 -0.08 -9.42 16 19 C 0.13 1.73 6.30 -83.54 -0.53 1.20 16 20 C -0.08 -1.08 8.80 -39.10 -0.34 -1.43 16 21 C -0.15 -1.71 10.10 -39.47 -0.40 -2.11 16 22 C 0.07 0.77 11.18 -17.53 -0.20 0.57 16 23 N -0.47 -6.02 10.35 -13.09 -0.14 -6.15 16 24 C 0.07 0.84 11.12 -17.33 -0.19 0.65 16 25 H 0.29 7.03 8.73 -40.82 -0.36 6.67 16 26 H 0.11 2.53 4.15 -52.49 -0.22 2.31 16 27 H 0.09 1.77 8.06 -52.48 -0.42 1.34 16 28 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 29 H 0.13 2.86 5.45 -52.49 -0.29 2.57 16 30 H 0.40 7.01 7.35 -40.82 -0.30 6.71 16 31 H 0.41 4.21 8.85 -40.82 -0.36 3.84 16 32 H 0.15 2.29 6.40 -52.48 -0.34 1.95 16 33 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.16 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 297.02 15.07 4.48 4.48 Total: -1.00 -29.29 297.02 -7.75 -37.04 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -3.19 Total: 14.58 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -5.33 Total: -15.61 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: 0.48 Total: -47.75 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.06 Total: -11.67 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -4.25 Total: 18.94 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.29 -7.75 -37.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185692204.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.557 kcal (2) G-P(sol) polarization free energy of solvation -29.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds