Wall clock time and date at job start Tue Mar 31 2020 05:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39602 * 120.45698 * 159.26096 * 3 2 1 5 5 C 1.37689 * 120.18623 * 179.97438 * 4 3 2 6 6 C 1.39810 * 121.17088 * 0.03883 * 5 4 3 7 7 C 1.48353 * 119.53536 * 179.97438 * 6 5 4 8 8 C 1.40909 * 126.23779 * 180.02562 * 7 6 5 9 9 N 1.30643 * 108.08278 * 179.97438 * 8 7 6 10 10 N 1.40004 * 108.54926 * 0.02562 * 9 8 7 11 11 C 1.46508 * 125.88268 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.46576 * 304.96819 * 11 10 9 13 13 O 1.42901 * 109.46964 * 179.97438 * 12 11 10 14 14 C 1.34755 * 108.23952 * 359.74453 * 10 9 8 15 15 C 1.38604 * 120.93294 * 359.95799 * 6 5 4 16 16 C 1.40582 * 119.73842 * 359.75834 * 15 6 5 17 17 C 1.40843 * 120.55925 * 180.27627 * 16 15 6 18 18 H 1.07993 * 120.00630 * 204.62985 * 17 16 15 19 19 C 1.40238 * 119.99712 * 24.62853 * 17 16 15 20 20 N 1.30659 * 119.99939 * 17.29907 * 19 17 16 21 21 Si 1.86802 * 119.99550 * 197.30295 * 19 17 16 22 22 H 1.48500 * 109.46956 * 60.00221 * 21 19 17 23 23 H 1.48501 * 109.46853 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47238 * 299.99653 * 21 19 17 25 25 H 1.08004 * 119.90952 * 359.97121 * 4 3 2 26 26 H 1.08002 * 119.41828 * 180.02562 * 5 4 3 27 27 H 1.07999 * 125.96019 * 0.02562 * 8 7 6 28 28 H 1.09000 * 109.46825 * 64.96764 * 11 10 9 29 29 H 1.08998 * 109.47238 * 184.97037 * 11 10 9 30 30 H 1.08997 * 109.47668 * 300.00044 * 12 11 10 31 31 H 1.08998 * 109.47159 * 60.00169 * 12 11 10 32 32 H 0.96700 * 114.00235 * 180.02562 * 13 12 11 33 33 H 1.08008 * 126.20401 * 180.26369 * 14 10 9 34 34 H 1.07999 * 120.13445 * 180.02562 * 15 6 5 35 35 H 0.96998 * 119.99746 * 184.60053 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2751 1.1264 -0.4261 5 6 4.6520 1.1211 -0.4233 6 6 5.3705 -0.0006 0.0012 7 6 6.8536 0.0331 -0.0113 8 6 7.7138 -1.0108 0.3834 9 7 8.9450 -0.6021 0.2285 10 7 8.9207 0.7074 -0.2661 11 6 10.0926 1.5299 -0.5766 12 6 10.9965 1.6152 0.6549 13 8 12.1399 2.4170 0.3519 14 6 7.6337 1.0793 -0.4122 15 6 4.7167 -1.1436 0.4340 16 6 3.3114 -1.1784 0.4528 17 6 2.6294 -2.3287 0.8947 18 1 1.6227 -2.5233 0.5557 19 6 3.2577 -3.2215 1.7749 20 7 4.3123 -2.8430 2.4469 21 14 2.5868 -4.9520 1.9863 22 1 2.6150 -5.6569 0.6795 23 1 3.4240 -5.6913 2.9650 24 1 1.1887 -4.8838 2.4820 25 1 2.7407 2.0039 -0.7590 26 1 5.1865 1.9989 -0.7552 27 1 7.4087 -1.9801 0.7492 28 1 10.6443 1.0795 -1.4018 29 1 9.7689 2.5315 -0.8598 30 1 10.4449 2.0656 1.4801 31 1 11.3202 0.6137 0.9380 32 1 12.7585 2.5143 1.0887 33 1 7.2828 2.0330 -0.7781 34 1 5.2846 -2.0026 0.7596 35 1 4.7864 -3.4796 3.0045 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206570908.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:46 Heat of formation + Delta-G solvation = 65.994246 kcal Electronic energy + Delta-G solvation = -20384.177050 eV Core-core repulsion = 17155.421480 eV Total energy + Delta-G solvation = -3228.755570 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.89010 -37.67572 -37.25910 -35.11700 -34.15778 -33.43588 -31.17428 -29.90762 -29.37950 -27.34628 -25.76724 -23.50285 -22.55257 -21.50011 -19.98806 -19.77028 -17.98643 -17.67006 -16.95823 -16.32518 -15.86283 -15.32478 -14.96804 -14.20694 -14.06056 -13.73867 -13.66810 -13.13035 -12.78742 -12.63798 -12.56336 -12.46349 -12.00179 -11.76393 -11.69509 -11.52334 -11.29528 -11.14285 -10.95732 -10.63835 -10.51646 -10.29521 -9.92785 -9.69000 -9.46868 -9.18371 -8.70596 -7.72262 -7.17723 -6.86806 -4.67984 1.76770 2.30864 2.53026 2.70464 2.94724 2.97899 3.05828 3.35758 3.73744 3.95782 3.96670 4.37799 4.50157 4.54245 4.79940 5.01240 5.11150 5.16852 5.46146 5.48344 5.50660 5.53958 5.79007 5.95284 6.16422 6.20958 6.37012 6.74951 6.86364 6.94507 7.03143 7.18827 7.22818 7.27602 7.54568 7.71660 7.81286 7.90957 8.01632 8.27160 8.48438 8.59799 8.87673 9.80178 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.018280 B = 0.004267 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.340027 B = 6561.093287 C = 7920.439089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C 0.301 3.699 3 C -0.192 4.192 4 C -0.026 4.026 5 C -0.242 4.242 6 C 0.028 3.972 7 C -0.168 4.168 8 C 0.071 3.929 9 N -0.309 5.309 10 N -0.381 5.381 11 C 0.141 3.859 12 C 0.066 3.934 13 O -0.574 6.574 14 C 0.054 3.946 15 C -0.152 4.152 16 C 0.155 3.845 17 C -0.432 4.432 18 H 0.084 0.916 19 C 0.079 3.921 20 N -0.765 5.765 21 Si 0.911 3.089 22 H -0.259 1.259 23 H -0.274 1.274 24 H -0.261 1.261 25 H 0.098 0.902 26 H 0.094 0.906 27 H 0.187 0.813 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.387 0.613 33 H 0.174 0.826 34 H 0.128 0.872 35 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.922 4.617 -1.536 14.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.194 5.194 2 C -0.008 4.008 3 C -0.199 4.199 4 C -0.047 4.047 5 C -0.262 4.262 6 C 0.026 3.974 7 C -0.178 4.178 8 C -0.115 4.115 9 N -0.129 5.129 10 N -0.165 5.165 11 C 0.019 3.981 12 C -0.013 4.013 13 O -0.379 6.379 14 C -0.090 4.090 15 C -0.172 4.172 16 C 0.150 3.850 17 C -0.460 4.460 18 H 0.102 0.898 19 C -0.144 4.144 20 N -0.388 5.388 21 Si 0.734 3.266 22 H -0.183 1.183 23 H -0.198 1.198 24 H -0.186 1.186 25 H 0.116 0.884 26 H 0.112 0.888 27 H 0.204 0.796 28 H 0.106 0.894 29 H 0.118 0.882 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.234 0.766 33 H 0.191 0.809 34 H 0.146 0.854 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 13.392 4.399 -1.792 14.210 hybrid contribution -0.382 -0.532 0.712 0.967 sum 13.011 3.867 -1.080 13.616 Atomic orbital electron populations 1.81012 1.12818 1.10652 1.14903 1.25840 0.92779 0.91234 0.90976 1.16965 0.83155 0.97205 1.22537 1.20338 0.93601 0.94883 0.95885 1.20008 0.92963 0.98481 1.14762 1.17838 0.87909 0.94487 0.97212 1.19259 0.94369 0.94056 1.10157 1.24102 0.89144 1.00170 0.98134 1.77130 1.22087 0.92671 1.21033 1.48141 1.04762 1.11387 1.52174 1.21245 0.84767 0.94568 0.97505 1.22328 0.87037 0.95390 0.96557 1.86346 1.35321 1.73217 1.43064 1.22518 0.83394 1.00589 1.02539 1.21233 0.93540 0.97547 1.04869 1.18319 0.91251 0.89090 0.86388 1.19725 1.01535 1.03756 1.20962 0.89805 1.26040 0.94414 1.00903 0.93012 1.69720 1.15201 1.36266 1.17564 0.86278 0.80239 0.80548 0.79512 1.18285 1.19826 1.18573 0.88403 0.88771 0.79613 0.89397 0.88160 0.92960 0.91949 0.76560 0.80909 0.85416 0.89856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.51 18.54 41.84 0.78 -11.73 16 2 C 0.30 7.11 14.28 -22.47 -0.32 6.79 16 3 C -0.19 -4.40 5.95 -104.11 -0.62 -5.02 16 4 C -0.03 -0.53 9.74 -39.27 -0.38 -0.91 16 5 C -0.24 -4.60 9.50 -39.19 -0.37 -4.97 16 6 C 0.03 0.56 5.86 -105.01 -0.62 -0.06 16 7 C -0.17 -2.95 6.03 -105.34 -0.64 -3.59 16 8 C 0.07 1.22 11.39 -17.05 -0.19 1.03 16 9 N -0.31 -5.03 12.37 30.81 0.38 -4.65 16 10 N -0.38 -5.32 3.67 -61.09 -0.22 -5.55 16 11 C 0.14 1.47 6.87 -4.04 -0.03 1.44 16 12 C 0.07 0.63 7.23 37.16 0.27 0.90 16 13 O -0.57 -4.91 13.66 -35.23 -0.48 -5.39 16 14 C 0.05 0.79 10.80 -16.89 -0.18 0.61 16 15 C -0.15 -3.40 8.21 -38.56 -0.32 -3.71 16 16 C 0.15 3.71 5.73 -104.68 -0.60 3.11 16 17 C -0.43 -10.52 8.58 -37.85 -0.32 -10.85 16 18 H 0.08 2.08 7.37 -52.49 -0.39 1.69 16 19 C 0.08 1.77 5.16 -17.30 -0.09 1.68 16 20 N -0.76 -17.20 10.94 55.56 0.61 -16.60 16 21 Si 0.91 17.18 29.60 -169.99 -5.03 12.15 16 22 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 23 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 24 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 25 H 0.10 1.73 8.06 -52.48 -0.42 1.30 16 26 H 0.09 1.51 6.90 -52.49 -0.36 1.14 16 27 H 0.19 3.02 7.30 -52.49 -0.38 2.63 16 28 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.10 0.84 8.07 -51.93 -0.42 0.42 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.39 1.58 9.12 45.56 0.42 2.00 16 33 H 0.17 2.01 7.22 -52.48 -0.38 1.63 16 34 H 0.13 2.85 5.08 -52.49 -0.27 2.58 16 35 H 0.29 5.88 8.30 -40.82 -0.34 5.54 16 LS Contribution 317.26 15.07 4.78 4.78 Total: -1.00 -28.27 317.26 -6.21 -34.48 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -2.61 Total: 6.05 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -4.41 Total: -13.55 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 1.54 Total: -38.52 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.48 Total: -5.39 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -5.03 Total: 12.15 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.27 -6.21 -34.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206570908.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.471 kcal (2) G-P(sol) polarization free energy of solvation -28.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds