Wall clock time and date at job start Tue Mar 31 2020 05:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39602 * 120.45698 * 159.26096 * 3 2 1 5 5 C 1.37689 * 120.18623 * 179.97438 * 4 3 2 6 6 C 1.39810 * 121.17088 * 0.03883 * 5 4 3 7 7 C 1.48353 * 119.53536 * 179.97438 * 6 5 4 8 8 C 1.40909 * 126.23779 * 180.02562 * 7 6 5 9 9 N 1.30643 * 108.08278 * 179.97438 * 8 7 6 10 10 N 1.40004 * 108.54926 * 0.02562 * 9 8 7 11 11 C 1.46508 * 125.88268 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.46576 * 304.96819 * 11 10 9 13 13 O 1.42901 * 109.46964 * 179.97438 * 12 11 10 14 14 C 1.34755 * 108.23952 * 359.74453 * 10 9 8 15 15 C 1.38604 * 120.93294 * 359.95799 * 6 5 4 16 16 C 1.40582 * 119.73842 * 359.75834 * 15 6 5 17 17 C 1.40843 * 120.55925 * 180.27627 * 16 15 6 18 18 H 1.07993 * 120.00630 * 204.62985 * 17 16 15 19 19 C 1.40238 * 119.99712 * 24.62853 * 17 16 15 20 20 N 1.30659 * 119.99939 * 17.29907 * 19 17 16 21 21 Si 1.86802 * 119.99550 * 197.30295 * 19 17 16 22 22 H 1.48500 * 109.46956 * 60.00221 * 21 19 17 23 23 H 1.48501 * 109.46853 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47238 * 299.99653 * 21 19 17 25 25 H 1.08004 * 119.90952 * 359.97121 * 4 3 2 26 26 H 1.08002 * 119.41828 * 180.02562 * 5 4 3 27 27 H 1.07999 * 125.96019 * 0.02562 * 8 7 6 28 28 H 1.09000 * 109.46825 * 64.96764 * 11 10 9 29 29 H 1.08998 * 109.47238 * 184.97037 * 11 10 9 30 30 H 1.08997 * 109.47668 * 300.00044 * 12 11 10 31 31 H 1.08998 * 109.47159 * 60.00169 * 12 11 10 32 32 H 0.96700 * 114.00235 * 180.02562 * 13 12 11 33 33 H 1.08008 * 126.20401 * 180.26369 * 14 10 9 34 34 H 1.07999 * 120.13445 * 180.02562 * 15 6 5 35 35 H 0.96998 * 119.99746 * 184.60053 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2751 1.1264 -0.4261 5 6 4.6520 1.1211 -0.4233 6 6 5.3705 -0.0006 0.0012 7 6 6.8536 0.0331 -0.0113 8 6 7.7138 -1.0108 0.3834 9 7 8.9450 -0.6021 0.2285 10 7 8.9207 0.7074 -0.2661 11 6 10.0926 1.5299 -0.5766 12 6 10.9965 1.6152 0.6549 13 8 12.1399 2.4170 0.3519 14 6 7.6337 1.0793 -0.4122 15 6 4.7167 -1.1436 0.4340 16 6 3.3114 -1.1784 0.4528 17 6 2.6294 -2.3287 0.8947 18 1 1.6227 -2.5233 0.5557 19 6 3.2577 -3.2215 1.7749 20 7 4.3123 -2.8430 2.4469 21 14 2.5868 -4.9520 1.9863 22 1 2.6150 -5.6569 0.6795 23 1 3.4240 -5.6913 2.9650 24 1 1.1887 -4.8838 2.4820 25 1 2.7407 2.0039 -0.7590 26 1 5.1865 1.9989 -0.7552 27 1 7.4087 -1.9801 0.7492 28 1 10.6443 1.0795 -1.4018 29 1 9.7689 2.5315 -0.8598 30 1 10.4449 2.0656 1.4801 31 1 11.3202 0.6137 0.9380 32 1 12.7585 2.5143 1.0887 33 1 7.2828 2.0330 -0.7781 34 1 5.2846 -2.0026 0.7596 35 1 4.7864 -3.4796 3.0045 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206570908.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:46 Heat of formation + Delta-G solvation = 48.624003 kcal Electronic energy + Delta-G solvation = -20384.930280 eV Core-core repulsion = 17155.421480 eV Total energy + Delta-G solvation = -3229.508800 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.09927 -39.26116 -38.00740 -36.92925 -35.78860 -34.52392 -32.65022 -31.53406 -30.53724 -28.60069 -27.45532 -24.48742 -24.05453 -22.95556 -21.34681 -21.00752 -19.37902 -18.78491 -18.58653 -17.45969 -16.92440 -16.65940 -15.97799 -15.62608 -15.48789 -15.11143 -14.74284 -14.58945 -14.43150 -14.33410 -13.87127 -13.71223 -13.40317 -13.23381 -13.16638 -13.02312 -12.73289 -12.58097 -12.46368 -12.12479 -11.89151 -11.46692 -11.27811 -11.12850 -11.00836 -10.35776 -10.14954 -9.39979 -8.81875 -8.37309 -6.44940 0.24991 1.01722 1.10807 1.38998 1.47700 1.51458 1.54399 1.87372 2.10835 2.17578 2.68163 2.78537 3.21505 3.71660 3.74281 3.83137 4.00568 4.04673 4.12406 4.30577 4.38480 4.54319 4.63668 4.74330 4.84413 4.86714 4.95850 5.06604 5.28661 5.36203 5.54518 5.70484 5.89683 6.04539 6.13684 6.21893 6.26241 6.56486 6.74183 6.75434 6.78627 6.90187 7.05409 8.16140 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.018280 B = 0.004267 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.340027 B = 6561.093287 C = 7920.439089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C 0.306 3.694 3 C -0.219 4.219 4 C -0.025 4.025 5 C -0.232 4.232 6 C 0.039 3.961 7 C -0.208 4.208 8 C 0.060 3.940 9 N -0.324 5.324 10 N -0.371 5.371 11 C 0.132 3.868 12 C 0.074 3.926 13 O -0.581 6.581 14 C 0.083 3.917 15 C -0.178 4.178 16 C 0.135 3.865 17 C -0.472 4.472 18 H 0.064 0.936 19 C 0.050 3.950 20 N -0.785 5.785 21 Si 0.969 3.031 22 H -0.258 1.258 23 H -0.256 1.256 24 H -0.271 1.271 25 H 0.126 0.874 26 H 0.137 0.863 27 H 0.180 0.820 28 H 0.094 0.906 29 H 0.131 0.869 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.406 0.594 33 H 0.214 0.786 34 H 0.119 0.881 35 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.107 6.534 -2.193 17.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.219 5.219 2 C -0.002 4.002 3 C -0.225 4.225 4 C -0.045 4.045 5 C -0.251 4.251 6 C 0.037 3.963 7 C -0.219 4.219 8 C -0.126 4.126 9 N -0.145 5.145 10 N -0.154 5.154 11 C 0.011 3.989 12 C -0.005 4.005 13 O -0.390 6.390 14 C -0.063 4.063 15 C -0.198 4.198 16 C 0.129 3.871 17 C -0.500 4.500 18 H 0.082 0.918 19 C -0.170 4.170 20 N -0.408 5.408 21 Si 0.790 3.210 22 H -0.182 1.182 23 H -0.179 1.179 24 H -0.196 1.196 25 H 0.144 0.856 26 H 0.155 0.845 27 H 0.197 0.803 28 H 0.112 0.888 29 H 0.148 0.852 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.257 0.743 33 H 0.230 0.770 34 H 0.136 0.864 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 15.629 6.327 -2.439 17.037 hybrid contribution -0.817 -0.932 0.855 1.506 sum 14.813 5.395 -1.583 15.844 Atomic orbital electron populations 1.80983 1.13352 1.11447 1.16099 1.26117 0.93077 0.90621 0.90419 1.17243 0.82802 0.98301 1.24190 1.20682 0.94305 0.94692 0.94840 1.20473 0.92656 0.99238 1.12730 1.18109 0.89561 0.93773 0.94860 1.19203 0.93307 0.95786 1.13580 1.24100 0.89620 1.00344 0.98549 1.77108 1.21545 0.94150 1.21696 1.48458 1.05832 1.10739 1.50327 1.21620 0.83894 0.95377 0.97988 1.22122 0.87360 0.94929 0.96094 1.86302 1.35386 1.72779 1.44497 1.23015 0.83035 1.00771 0.99516 1.21193 0.92936 0.98673 1.07010 1.18605 0.92261 0.89445 0.86743 1.19784 1.01303 1.05736 1.23169 0.91766 1.26606 0.94620 1.03560 0.92253 1.69721 1.15843 1.37470 1.17801 0.85424 0.79161 0.76744 0.79653 1.18195 1.17943 1.19586 0.85620 0.84513 0.80272 0.88815 0.85150 0.92940 0.93259 0.74327 0.76980 0.86355 0.88967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.54 -26.76 18.54 19.00 0.35 -26.41 16 2 C 0.31 14.77 14.28 88.33 1.26 16.04 16 3 C -0.22 -10.13 5.95 -19.54 -0.12 -10.24 16 4 C -0.02 -0.95 9.74 22.47 0.22 -0.73 16 5 C -0.23 -8.08 9.50 22.52 0.21 -7.87 16 6 C 0.04 1.53 5.86 -20.12 -0.12 1.41 16 7 C -0.21 -6.92 6.03 -20.33 -0.12 -7.05 16 8 C 0.06 2.03 11.39 85.52 0.97 3.00 16 9 N -0.32 -10.08 12.37 -56.43 -0.70 -10.77 16 10 N -0.37 -9.15 3.67 -347.19 -1.27 -10.42 16 11 C 0.13 2.22 6.87 86.38 0.59 2.82 16 12 C 0.07 1.20 7.23 71.98 0.52 1.72 16 13 O -0.58 -8.09 13.66 -148.98 -2.03 -10.13 16 14 C 0.08 2.10 10.80 83.84 0.91 3.00 16 15 C -0.18 -8.14 8.21 22.93 0.19 -7.96 16 16 C 0.13 6.67 5.73 -19.90 -0.11 6.56 16 17 C -0.47 -24.17 8.58 23.39 0.20 -23.97 16 18 H 0.06 3.41 7.37 -2.91 -0.02 3.38 16 19 C 0.05 2.33 5.16 85.35 0.44 2.77 16 20 N -0.79 -36.41 10.94 21.88 0.24 -36.17 16 21 Si 0.97 36.19 29.60 68.60 2.03 38.22 16 22 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 23 H -0.26 -8.71 7.11 99.48 0.71 -8.00 16 24 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 25 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 26 H 0.14 3.58 6.90 -2.91 -0.02 3.56 16 27 H 0.18 6.07 7.30 -2.91 -0.02 6.05 16 28 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.13 1.48 8.07 -2.39 -0.02 1.46 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.41 2.14 9.12 -74.06 -0.68 1.46 16 33 H 0.21 3.54 7.22 -2.91 -0.02 3.52 16 34 H 0.12 5.52 5.08 -2.91 -0.01 5.50 16 35 H 0.30 12.36 8.30 -92.71 -0.77 11.59 16 Total: -1.00 -62.97 317.26 4.14 -58.83 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.48 Total: 17.34 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: 5.05 Total: -20.49 kcal Atomic # 7 Polarization: -82.40 SS G_CDS: -1.38 Total: -83.78 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -2.03 Total: -10.13 kcal Atomic # 14 Polarization: 36.19 SS G_CDS: 2.03 Total: 38.22 kcal Total: -62.97 4.14 -58.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206570908.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.456 kcal (2) G-P(sol) polarization free energy of solvation -62.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds