Wall clock time and date at job start Tue Mar 31 2020 05:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39080 * 120.56766 * 236.46075 * 3 2 1 5 5 C 1.39394 * 119.80280 * 180.32287 * 4 3 2 6 6 C 1.48029 * 119.49751 * 179.68922 * 5 4 3 7 7 C 1.41087 * 126.36380 * 359.66161 * 6 5 4 8 8 N 1.30560 * 108.11677 * 179.81926 * 7 6 5 9 9 N 1.39948 * 108.84564 * 0.44710 * 8 7 6 10 10 C 1.46502 * 125.81479 * 179.71334 * 9 8 7 11 11 C 1.52998 * 109.47043 * 305.00034 * 10 9 8 12 12 O 1.42899 * 109.47427 * 179.97438 * 11 10 9 13 13 C 1.34692 * 108.37387 * 359.71196 * 9 8 7 14 14 C 1.39989 * 121.00263 * 359.66567 * 5 4 3 15 15 C 1.35981 * 121.19488 * 0.02562 * 14 5 4 16 16 C 1.41055 * 120.10581 * 0.02562 * 15 14 5 17 17 C 1.40430 * 120.48386 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99490 * 208.76615 * 17 16 15 19 19 C 1.40245 * 120.00355 * 28.77053 * 17 16 15 20 20 N 1.30666 * 120.00248 * 197.56027 * 19 17 16 21 21 Si 1.86800 * 119.99937 * 17.55109 * 19 17 16 22 22 H 1.48498 * 109.47562 * 270.00181 * 21 19 17 23 23 H 1.48501 * 109.46964 * 30.00838 * 21 19 17 24 24 H 1.48506 * 109.46964 * 150.00018 * 21 19 17 25 25 H 1.07997 * 120.09762 * 0.02562 * 4 3 2 26 26 H 1.08001 * 125.93983 * 0.02562 * 7 6 5 27 27 H 1.08999 * 109.46864 * 65.00037 * 10 9 8 28 28 H 1.08999 * 109.47258 * 184.99998 * 10 9 8 29 29 H 1.08999 * 109.47293 * 299.99739 * 11 10 9 30 30 H 1.08999 * 109.47123 * 59.99882 * 11 10 9 31 31 H 0.96698 * 114.00787 * 180.02562 * 12 11 10 32 32 H 1.08005 * 126.30763 * 180.02562 * 13 9 8 33 33 H 1.07995 * 119.40054 * 180.02562 * 14 5 4 34 34 H 1.08001 * 119.94449 * 180.02562 * 15 14 5 35 35 H 0.97006 * 119.99936 * 355.44364 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2750 0.6626 0.9981 5 6 4.6688 0.6586 0.9789 6 6 5.4144 1.3712 2.0407 7 6 4.8544 2.0925 3.1162 8 7 5.8321 2.5714 3.8367 9 7 7.0483 2.1924 3.2575 10 6 8.3810 2.5354 3.7600 11 6 8.4955 4.0540 3.9065 12 8 9.7952 4.3887 4.3972 13 6 6.7850 1.4583 2.1592 14 6 5.3741 -0.0094 -0.0291 15 6 4.7241 -0.6747 -1.0211 16 6 3.3141 -0.7012 -1.0494 17 6 2.6348 -1.3854 -2.0704 18 1 1.6540 -1.0567 -2.3807 19 6 3.2299 -2.4956 -2.6870 20 7 2.7827 -2.9212 -3.8386 21 14 4.6623 -3.3658 -1.8620 22 1 5.9382 -2.7485 -2.3050 23 1 4.5362 -3.2384 -0.3878 24 1 4.6510 -4.8026 -2.2373 25 1 2.7457 1.1822 1.7831 26 1 3.8001 2.2227 3.3114 27 1 8.5357 2.0641 4.7306 28 1 9.1363 2.1801 3.0590 29 1 8.3408 4.5254 2.9359 30 1 7.7402 4.4094 4.6075 31 1 9.9389 5.3377 4.5151 32 1 7.5136 1.0186 1.4941 33 1 6.4539 0.0040 -0.0187 34 1 5.2885 -1.1836 -1.7885 35 1 1.9981 -2.5116 -4.2355 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206570933.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:50 Heat of formation + Delta-G solvation = 62.930612 kcal Electronic energy + Delta-G solvation = -20280.058938 eV Core-core repulsion = 17051.170519 eV Total energy + Delta-G solvation = -3228.888419 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.87560 -38.00221 -37.34011 -35.29408 -34.37713 -33.44270 -31.36683 -30.42897 -29.43245 -28.07824 -25.09915 -23.52425 -22.57338 -21.55440 -20.46010 -19.99531 -18.44966 -18.06419 -17.31164 -16.22482 -15.80801 -15.06054 -14.93905 -14.67381 -14.29989 -14.03712 -13.73591 -13.39295 -13.19631 -12.78080 -12.66156 -12.54239 -12.17892 -12.00122 -11.83912 -11.74772 -11.38176 -11.06386 -10.87928 -10.58415 -10.41486 -10.33118 -10.03406 -9.70883 -9.39461 -9.26610 -8.75259 -7.99491 -7.77956 -7.20010 -4.85040 1.81806 2.00209 2.34725 2.47714 2.97816 3.14019 3.28961 3.42736 3.75627 3.77858 3.90212 4.12573 4.41914 4.49299 4.74516 4.94975 5.03408 5.06618 5.21123 5.25989 5.39022 5.44103 5.71273 5.73811 5.90127 6.01276 6.14102 6.46836 6.54018 6.81710 6.96952 7.06914 7.14291 7.16955 7.31680 7.37699 7.53169 7.59344 7.92607 7.99588 8.10576 8.34482 8.66970 9.59066 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.022296 B = 0.003957 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.521960 B = 7075.056343 C = 8083.476371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C 0.297 3.703 3 C -0.174 4.174 4 C 0.000 4.000 5 C -0.157 4.157 6 C -0.137 4.137 7 C 0.048 3.952 8 N -0.307 5.307 9 N -0.376 5.376 10 C 0.141 3.859 11 C 0.066 3.934 12 O -0.574 6.574 13 C 0.027 3.973 14 C -0.034 4.034 15 C -0.240 4.240 16 C 0.131 3.869 17 C -0.472 4.472 18 H 0.084 0.916 19 C 0.040 3.960 20 N -0.781 5.781 21 Si 1.074 2.926 22 H -0.270 1.270 23 H -0.254 1.254 24 H -0.285 1.285 25 H 0.105 0.895 26 H 0.181 0.819 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.387 0.613 32 H 0.172 0.828 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.361 7.857 9.487 18.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.179 5.179 2 C -0.013 4.013 3 C -0.180 4.180 4 C -0.021 4.021 5 C -0.159 4.159 6 C -0.148 4.148 7 C -0.138 4.138 8 N -0.128 5.128 9 N -0.160 5.160 10 C 0.019 3.981 11 C -0.013 4.013 12 O -0.379 6.379 13 C -0.117 4.117 14 C -0.053 4.053 15 C -0.259 4.259 16 C 0.126 3.874 17 C -0.499 4.499 18 H 0.102 0.898 19 C -0.184 4.184 20 N -0.400 5.400 21 Si 0.898 3.102 22 H -0.196 1.196 23 H -0.178 1.178 24 H -0.213 1.213 25 H 0.123 0.877 26 H 0.198 0.802 27 H 0.106 0.894 28 H 0.119 0.881 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.234 0.766 32 H 0.189 0.811 33 H 0.117 0.883 34 H 0.132 0.868 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 13.127 6.697 10.232 17.941 hybrid contribution -1.142 1.443 -0.836 2.021 sum 11.986 8.139 9.396 17.268 Atomic orbital electron populations 1.81040 1.12682 1.13186 1.11024 1.25707 0.92665 0.91352 0.91570 1.16737 0.83327 1.16321 1.01569 1.20552 0.92719 0.94123 0.94702 1.17085 0.91287 1.09221 0.98320 1.19245 0.91044 1.05574 0.98909 1.23936 0.98690 0.97420 0.93718 1.76980 0.89146 1.24288 1.22386 1.47970 1.05085 1.41946 1.21030 1.21246 0.79731 0.95328 1.01786 1.22328 0.84886 0.95113 0.98954 1.86352 1.32842 1.30051 1.88673 1.22704 0.97231 0.99817 0.91976 1.20332 0.97774 0.94443 0.92727 1.20722 0.93810 1.09033 1.02356 1.18525 0.91154 0.88961 0.88809 1.20877 1.04683 1.10409 1.13917 0.89833 1.27682 1.02512 0.95205 0.93012 1.70460 1.18930 1.39549 1.11100 0.83596 0.73583 0.75238 0.77788 1.19633 1.17832 1.21250 0.87733 0.80223 0.89413 0.88126 0.93013 0.92023 0.76550 0.81069 0.88291 0.86786 0.89462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.90 18.54 41.84 0.78 -11.12 16 2 C 0.30 6.79 14.34 -22.47 -0.32 6.47 16 3 C -0.17 -3.77 5.93 -104.27 -0.62 -4.39 16 4 C 0.00 0.01 9.28 -38.84 -0.36 -0.35 16 5 C -0.16 -2.80 5.88 -104.80 -0.62 -3.41 16 6 C -0.14 -2.16 6.07 -104.95 -0.64 -2.80 16 7 C 0.05 0.72 11.40 -17.01 -0.19 0.53 16 8 N -0.31 -4.57 12.34 30.84 0.38 -4.19 16 9 N -0.38 -4.89 3.66 -60.75 -0.22 -5.11 16 10 C 0.14 1.37 6.86 -4.04 -0.03 1.35 16 11 C 0.07 0.59 7.22 37.16 0.27 0.85 16 12 O -0.57 -4.60 13.66 -35.23 -0.48 -5.08 16 13 C 0.03 0.36 10.86 -16.44 -0.18 0.18 16 14 C -0.03 -0.60 9.44 -39.74 -0.37 -0.98 16 15 C -0.24 -4.90 7.21 -39.32 -0.28 -5.18 16 16 C 0.13 2.99 5.30 -104.61 -0.55 2.43 16 17 C -0.47 -11.56 8.90 -38.00 -0.34 -11.90 16 18 H 0.08 2.20 7.61 -52.49 -0.40 1.80 16 19 C 0.04 0.94 5.42 -17.29 -0.09 0.85 16 20 N -0.78 -19.07 13.65 55.56 0.76 -18.31 16 21 Si 1.07 21.32 24.90 -169.99 -4.23 17.09 16 22 H -0.27 -4.90 6.44 56.52 0.36 -4.53 16 23 H -0.25 -4.98 7.02 56.52 0.40 -4.59 16 24 H -0.29 -5.60 7.11 56.52 0.40 -5.20 16 25 H 0.10 1.72 6.98 -52.49 -0.37 1.35 16 26 H 0.18 2.31 7.30 -52.49 -0.38 1.93 16 27 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.10 0.79 8.06 -51.93 -0.42 0.37 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.39 1.37 9.12 45.56 0.42 1.79 16 32 H 0.17 1.84 7.25 -52.48 -0.38 1.46 16 33 H 0.10 1.46 6.92 -52.49 -0.36 1.10 16 34 H 0.11 2.26 4.39 -52.49 -0.23 2.03 16 35 H 0.29 7.03 8.73 -40.82 -0.36 6.68 16 LS Contribution 312.22 15.07 4.71 4.71 Total: -1.00 -28.36 312.22 -5.24 -33.59 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -2.59 Total: 4.79 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -4.33 Total: -16.36 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 1.69 Total: -38.73 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.48 Total: -5.08 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.23 Total: 17.09 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.36 -5.24 -33.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206570933.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.524 kcal (2) G-P(sol) polarization free energy of solvation -28.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds