Wall clock time and date at job start Tue Mar 31 2020 05:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39950 * 120.00384 * 161.99139 * 3 2 1 5 5 C 1.37706 * 120.23747 * 179.97438 * 4 3 2 6 6 C 1.38851 * 120.25589 * 359.97438 * 5 4 3 7 7 O 1.35577 * 119.99589 * 180.27390 * 6 5 4 8 8 C 1.42903 * 116.99812 * 6.23522 * 7 6 5 9 9 C 1.53934 * 113.73604 * 255.79065 * 8 7 6 10 10 N 1.48185 * 86.10114 * 221.96061 * 9 8 7 11 11 C 1.46904 * 111.07071 * 137.52464 * 10 9 8 12 12 C 1.50696 * 109.47657 * 70.56011 * 11 10 9 13 13 H 1.08007 * 119.99617 * 0.02562 * 12 11 10 14 14 C 1.37869 * 120.00451 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99739 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 120.00210 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47373 * 60.00157 * 16 14 12 18 18 H 1.48508 * 109.47163 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47401 * 299.99657 * 16 14 12 20 20 C 1.47958 * 90.80189 * 24.60165 * 10 9 8 21 21 C 1.40349 * 120.01030 * 359.97438 * 6 5 4 22 22 C 1.43195 * 120.11977 * 180.02562 * 21 6 5 23 23 N 5.90841 * 144.67594 * 341.94309 * 2 1 3 24 24 C 1.39338 * 119.75661 * 0.02562 * 21 6 5 25 25 H 1.07998 * 119.88204 * 359.97438 * 4 3 2 26 26 H 1.08004 * 119.87011 * 179.97438 * 5 4 3 27 27 H 1.08999 * 112.93882 * 27.36387 * 8 7 6 28 28 H 1.09009 * 113.75657 * 336.24305 * 9 8 7 29 29 H 1.08993 * 113.76041 * 107.60365 * 9 8 7 30 30 H 1.09004 * 109.46871 * 190.56641 * 11 10 9 31 31 H 1.09002 * 109.46689 * 310.56289 * 11 10 9 32 32 H 0.96999 * 120.00014 * 180.02562 * 15 14 12 33 33 H 1.09000 * 113.75552 * 221.08918 * 20 10 9 34 34 H 1.08998 * 113.75885 * 89.71840 * 20 10 9 35 35 H 1.08001 * 120.11996 * 179.97438 * 24 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2673 1.1535 -0.3747 5 6 4.6444 1.1597 -0.3759 6 6 5.3494 0.0224 -0.0050 7 8 6.7051 0.0360 -0.0028 8 6 7.3417 1.2894 -0.2593 9 6 7.9324 1.4058 -1.6761 10 7 9.1002 2.0467 -1.0270 11 6 10.3597 1.5526 -1.5996 12 6 10.5168 2.0833 -3.0012 13 1 9.7571 2.7240 -3.4243 14 6 11.6301 1.7511 -3.7434 15 7 12.5548 0.9705 -3.2284 16 14 11.8251 2.4095 -5.4806 17 1 11.8458 3.8941 -5.4479 18 1 13.0982 1.9099 -6.0593 19 1 10.6868 1.9486 -6.3154 20 6 8.7931 1.3625 0.2484 21 6 4.6588 -1.1392 0.3737 22 6 5.3835 -2.3132 0.7572 23 7 5.9567 -3.2480 1.0589 24 6 3.2654 -1.1460 0.3751 25 1 2.7251 2.0416 -0.6639 26 1 5.1781 2.0525 -0.6665 27 1 6.7311 2.1437 0.0330 28 1 8.1590 0.4447 -2.1377 29 1 7.3724 2.0724 -2.3319 30 1 11.1950 1.8917 -0.9868 31 1 10.3452 0.4630 -1.6232 32 1 13.3383 0.7370 -3.7505 33 1 8.9195 1.9947 1.1273 34 1 9.2721 0.3888 0.3508 35 1 2.7281 -2.0368 0.6651 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229033836.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:59 Heat of formation + Delta-G solvation = 89.394942 kcal Electronic energy + Delta-G solvation = -20223.220586 eV Core-core repulsion = 16995.479746 eV Total energy + Delta-G solvation = -3227.740840 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.99159 -39.36659 -37.56300 -36.72411 -36.13544 -32.98198 -32.02540 -31.01177 -29.32248 -26.03087 -25.50216 -24.47472 -23.89823 -21.84621 -20.65504 -19.51688 -18.57256 -17.18105 -16.82455 -16.45698 -15.75985 -15.32096 -15.17030 -14.50840 -14.38099 -14.33676 -13.96191 -13.78534 -13.42359 -13.38196 -13.21848 -12.87175 -12.60117 -12.42835 -12.32656 -12.13584 -11.90918 -11.86411 -11.35921 -10.99144 -10.79290 -10.44267 -10.40149 -9.86501 -9.61456 -9.30578 -8.66244 -8.60063 -8.05209 -6.14043 -4.17313 0.26167 0.46664 2.27504 2.30072 2.54728 2.75655 3.02891 3.26750 3.31647 3.33615 3.40228 3.54549 3.72732 4.24487 4.31437 4.36085 4.54182 4.54915 4.57109 4.81579 4.96738 5.19755 5.22178 5.36684 5.52230 5.60244 5.71267 5.84685 5.90473 6.00736 6.14250 6.18234 6.41532 7.00879 7.06094 7.15522 7.38218 7.47920 7.70868 7.94473 8.25647 8.88961 9.47848 10.97037 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.022110 B = 0.003351 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.071305 B = 8353.461970 C = 8909.218883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C 0.262 3.738 3 C -0.079 4.079 4 C 0.003 3.997 5 C -0.211 4.211 6 C 0.219 3.781 7 O -0.290 6.290 8 C 0.036 3.964 9 C 0.008 3.992 10 N -0.472 5.472 11 C 0.163 3.837 12 C -0.516 4.516 13 H 0.062 0.938 14 C 0.058 3.942 15 N -0.896 5.896 16 Si 0.900 3.100 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.009 3.991 21 C -0.068 4.068 22 C 0.261 3.739 23 N -0.408 5.408 24 C 0.018 3.982 25 H 0.144 0.856 26 H 0.156 0.844 27 H 0.112 0.888 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.036 0.964 31 H 0.002 0.998 32 H 0.264 0.736 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.490 0.428 7.244 18.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.096 5.096 2 C -0.054 4.054 3 C -0.083 4.083 4 C -0.018 4.018 5 C -0.229 4.229 6 C 0.167 3.833 7 O -0.200 6.200 8 C -0.020 4.020 9 C -0.121 4.121 10 N -0.197 5.197 11 C 0.037 3.963 12 C -0.554 4.554 13 H 0.081 0.919 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.728 3.272 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.120 4.120 21 C -0.072 4.072 22 C -0.055 4.055 23 N -0.083 5.083 24 C -0.005 4.005 25 H 0.162 0.838 26 H 0.173 0.827 27 H 0.130 0.870 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.054 0.946 31 H 0.020 0.980 32 H 0.073 0.927 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -17.897 -0.554 7.677 19.482 hybrid contribution 0.582 -0.034 -1.209 1.342 sum -17.314 -0.588 6.468 18.492 Atomic orbital electron populations 1.81294 1.11983 1.07107 1.09262 1.25448 0.92308 0.94044 0.93558 1.15598 0.84623 0.96065 1.11982 1.21167 0.93331 0.96435 0.90875 1.21279 0.94521 0.99100 1.08021 1.19304 0.83927 0.92101 0.87977 1.86265 1.14908 1.35969 1.82821 1.25320 0.93715 0.83594 0.99360 1.24314 0.93723 1.00088 0.94004 1.68683 1.04423 1.45507 1.01048 1.20233 0.86256 0.94028 0.95749 1.21002 1.06044 1.30506 0.97876 0.91935 1.24993 0.95690 0.95068 0.98694 1.69940 1.10085 1.35816 1.37607 0.86528 0.77386 0.79344 0.83983 1.20067 1.21254 1.20165 1.24187 0.90799 0.99614 0.97420 1.15033 0.91023 0.88611 1.12567 1.25157 0.93757 0.92700 0.93866 1.81311 1.07113 1.10844 1.09079 1.20958 0.90772 0.97217 0.91531 0.83824 0.82704 0.87040 0.90109 0.89328 0.94591 0.97972 0.92657 0.88956 0.90547 0.83412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.51 18.54 41.84 0.78 -3.73 16 2 C 0.26 2.10 15.32 -22.47 -0.34 1.76 16 3 C -0.08 -0.49 5.73 -106.92 -0.61 -1.10 16 4 C 0.00 0.02 9.73 -39.14 -0.38 -0.37 16 5 C -0.21 -1.41 8.97 -39.55 -0.35 -1.77 16 6 C 0.22 2.04 6.69 -38.56 -0.26 1.78 16 7 O -0.29 -3.58 9.57 -18.43 -0.18 -3.76 16 8 C 0.04 0.44 3.77 -25.80 -0.10 0.35 16 9 C 0.01 0.12 7.32 -2.64 -0.02 0.10 16 10 N -0.47 -9.07 6.25 -239.77 -1.50 -10.57 16 11 C 0.16 4.01 4.58 -4.98 -0.02 3.98 16 12 C -0.52 -13.83 8.84 -34.45 -0.30 -14.13 16 13 H 0.06 1.64 7.80 -52.48 -0.41 1.23 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -25.92 13.29 55.43 0.74 -25.18 16 16 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 20 C 0.01 0.13 7.81 -2.76 -0.02 0.11 16 21 C -0.07 -0.60 5.74 -106.77 -0.61 -1.21 16 22 C 0.26 3.08 14.86 -22.43 -0.33 2.74 16 23 N -0.41 -5.91 18.55 41.89 0.78 -5.14 16 24 C 0.02 0.12 9.45 -38.76 -0.37 -0.25 16 25 H 0.14 0.45 8.06 -52.49 -0.42 0.02 16 26 H 0.16 0.89 5.96 -52.48 -0.31 0.57 16 27 H 0.11 1.05 6.10 -51.93 -0.32 0.73 16 28 H 0.08 1.46 7.79 -51.92 -0.40 1.06 16 29 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.00 0.06 7.70 -51.93 -0.40 -0.34 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.08 1.27 7.79 -51.93 -0.40 0.87 16 35 H 0.15 0.66 8.06 -52.49 -0.42 0.23 16 LS Contribution 323.31 15.07 4.87 4.87 Total: -1.00 -31.79 323.31 -6.86 -38.65 By element: Atomic # 1 Polarization: -1.03 SS G_CDS: -3.50 Total: -4.53 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -3.83 Total: -6.51 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.79 Total: -44.62 kcal Atomic # 8 Polarization: -3.58 SS G_CDS: -0.18 Total: -3.76 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.79 -6.86 -38.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229033836.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.046 kcal (2) G-P(sol) polarization free energy of solvation -31.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds