Wall clock time and date at job start Tue Mar 31 2020 05:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 120.00176 * 2 1 4 4 H 1.48496 * 109.47411 * 240.00432 * 3 2 1 5 5 H 1.48496 * 109.47375 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47330 * 120.00489 * 3 2 1 7 7 C 1.37881 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00163 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99846 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47227 * 175.10423 * 9 7 2 11 11 C 1.46902 * 111.00010 * 294.06062 * 10 9 7 12 12 C 1.52998 * 109.46893 * 299.41645 * 11 10 9 13 13 C 1.53007 * 109.47253 * 181.10098 * 12 11 10 14 14 O 1.42889 * 109.47418 * 180.02562 * 13 12 11 15 15 C 1.46903 * 111.00372 * 170.10860 * 10 9 7 16 16 C 1.50702 * 109.47366 * 189.99977 * 15 10 9 17 17 C 1.38243 * 119.98503 * 270.29320 * 16 15 10 18 18 C 1.38213 * 120.00885 * 180.25445 * 17 16 15 19 19 C 1.38353 * 119.98714 * 359.47218 * 18 17 16 20 20 Cl 1.73598 * 120.01167 * 180.27524 * 19 18 17 21 21 C 1.38353 * 119.97443 * 0.25127 * 19 18 17 22 22 C 1.38210 * 119.98543 * 0.02562 * 21 19 18 23 23 H 0.96996 * 120.00290 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47344 * 55.10147 * 9 7 2 25 25 H 1.09003 * 109.46931 * 295.10484 * 9 7 2 26 26 H 1.08995 * 109.47278 * 59.41541 * 11 10 9 27 27 H 1.08999 * 109.47112 * 179.41817 * 11 10 9 28 28 H 1.08998 * 109.47158 * 301.09963 * 12 11 10 29 29 H 1.08996 * 109.47136 * 61.10387 * 12 11 10 30 30 H 1.09003 * 109.47021 * 300.00735 * 13 12 11 31 31 H 1.09005 * 109.46818 * 59.99526 * 13 12 11 32 32 H 0.96703 * 114.00303 * 180.02562 * 14 13 12 33 33 H 1.08996 * 109.47104 * 69.99596 * 15 10 9 34 34 H 1.09001 * 109.46617 * 310.00069 * 15 10 9 35 35 H 1.07994 * 119.99370 * 0.02562 * 17 16 15 36 36 H 1.08005 * 120.00455 * 179.74886 * 18 17 16 37 37 H 1.08001 * 120.00510 * 180.02562 * 21 19 18 38 38 H 1.08004 * 119.99274 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2011 -3.6131 -0.1193 11 6 2.8730 -3.5950 -1.4256 12 6 1.8308 -3.7341 -2.5371 13 6 2.5330 -3.7428 -3.8965 14 8 1.5596 -3.8721 -4.9346 15 6 1.5337 -4.9013 0.1114 16 6 2.5692 -5.9903 0.2257 17 6 2.9886 -6.6662 -0.9050 18 6 3.9344 -7.6686 -0.8000 19 6 4.4694 -7.9880 0.4353 20 17 5.6626 -9.2420 0.5668 21 6 4.0534 -7.3073 1.5656 22 6 3.1033 -6.3090 1.4602 23 1 -0.4850 0.8400 0.0004 24 1 0.5598 -2.5197 -0.8431 25 1 0.6921 -2.5960 0.9303 26 1 3.4087 -2.6534 -1.5456 27 1 3.5782 -4.4241 -1.4830 28 1 1.2819 -4.6665 -2.4058 29 1 1.1372 -2.8946 -2.4918 30 1 3.0821 -2.8103 -4.0277 31 1 3.2268 -4.5823 -3.9417 32 1 1.9345 -3.8851 -5.8259 33 1 0.8672 -5.1198 -0.7229 34 1 0.9560 -4.8509 1.0344 35 1 2.5745 -6.4135 -1.8698 36 1 4.2590 -8.1994 -1.6829 37 1 4.4709 -7.5559 2.5301 38 1 2.7788 -5.7772 2.3425 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235964242.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:34 Heat of formation + Delta-G solvation = -35.912120 kcal Electronic energy + Delta-G solvation = -20003.259525 eV Core-core repulsion = 16871.192457 eV Total energy + Delta-G solvation = -3132.067068 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.54693 -37.60677 -36.55637 -36.08811 -32.75927 -31.76943 -30.99378 -30.37828 -27.11157 -25.71483 -23.80962 -22.70974 -22.05985 -21.32264 -19.38741 -17.20495 -16.89568 -16.19644 -15.73456 -15.44673 -15.16165 -14.70772 -14.67955 -14.01857 -13.57599 -13.46364 -13.27343 -12.93229 -12.54196 -12.46671 -11.85707 -11.72495 -11.44585 -11.30106 -11.08818 -11.03903 -10.77216 -10.72949 -10.65786 -10.52354 -10.21784 -9.86662 -9.63698 -9.27359 -8.94273 -8.52118 -8.42570 -7.28020 -6.04680 -4.06196 1.22336 1.37178 2.12507 3.31742 3.36399 3.38819 3.69642 4.40924 4.46838 4.81956 4.92122 4.97454 5.12815 5.30407 5.31734 5.39899 5.45047 5.49995 5.72938 5.76861 5.79115 5.93532 6.01966 6.07840 6.14439 6.26001 6.32335 6.33197 6.62973 6.74423 6.85602 6.89536 7.23364 7.36854 7.76044 7.79090 8.02583 8.12461 8.48758 9.01161 9.58083 11.05868 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.017153 B = 0.004317 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.001103 B = 6484.664538 C = 7447.658821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.507 4.507 8 H 0.062 0.938 9 C 0.187 3.813 10 N -0.524 5.524 11 C 0.066 3.934 12 C -0.159 4.159 13 C 0.081 3.919 14 O -0.576 6.576 15 C 0.080 3.920 16 C -0.053 4.053 17 C -0.104 4.104 18 C -0.114 4.114 19 C -0.043 4.043 20 Cl -0.085 7.085 21 C -0.112 4.112 22 C -0.088 4.088 23 H 0.262 0.738 24 H 0.005 0.995 25 H 0.026 0.974 26 H 0.083 0.917 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.038 0.962 32 H 0.372 0.628 33 H 0.042 0.958 34 H 0.079 0.921 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.229 -14.823 -3.031 16.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.063 3.937 10 N -0.246 5.246 11 C -0.062 4.062 12 C -0.198 4.198 13 C 0.003 3.997 14 O -0.381 6.381 15 C -0.048 4.048 16 C -0.054 4.054 17 C -0.123 4.123 18 C -0.132 4.132 19 C -0.069 4.069 20 Cl -0.056 7.056 21 C -0.131 4.131 22 C -0.107 4.107 23 H 0.072 0.928 24 H 0.023 0.977 25 H 0.044 0.956 26 H 0.101 0.899 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.217 0.783 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.112 -14.731 -2.103 16.493 hybrid contribution 0.342 0.766 -1.107 1.389 sum 7.454 -13.965 -3.210 16.152 Atomic orbital electron populations 1.69936 1.06025 1.26915 1.50810 1.24961 0.94825 0.99212 0.95428 0.86591 0.79466 0.82903 0.78632 1.20323 1.21381 1.20185 1.21069 0.93416 0.89787 1.50305 0.91968 1.19840 0.90222 0.87144 0.96526 1.62455 1.32366 1.01325 1.28491 1.21991 0.95594 1.02055 0.86610 1.22241 1.01202 1.03214 0.93143 1.22162 0.90449 0.99052 0.88008 1.86531 1.36905 1.97085 1.17532 1.21146 0.93080 0.89045 1.01533 1.20113 0.96954 0.95474 0.92818 1.21089 0.97066 0.95285 0.98834 1.20955 0.97789 0.98526 0.95967 1.20857 0.95872 0.94657 0.95532 1.98346 1.56545 1.52283 1.98453 1.21021 0.98198 0.96457 0.97429 1.21058 0.95617 0.95871 0.98114 0.92847 0.97679 0.95556 0.89871 0.92463 0.92247 0.89562 0.93567 0.94423 0.78263 0.94046 0.90229 0.85398 0.85443 0.85292 0.84854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.11 13.29 55.43 0.74 -25.37 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -13.70 8.40 -34.44 -0.29 -13.99 16 8 H 0.06 1.67 7.29 -52.49 -0.38 1.29 16 9 C 0.19 4.62 4.49 -4.98 -0.02 4.59 16 10 N -0.52 -10.51 4.69 -237.52 -1.11 -11.63 16 11 C 0.07 1.20 4.78 -3.82 -0.02 1.19 16 12 C -0.16 -2.79 4.81 -26.73 -0.13 -2.92 16 13 C 0.08 1.19 7.05 37.16 0.26 1.45 16 14 O -0.58 -8.49 13.66 -35.23 -0.48 -8.97 16 15 C 0.08 1.34 4.93 -4.97 -0.02 1.32 16 16 C -0.05 -0.77 4.90 -104.62 -0.51 -1.28 16 17 C -0.10 -1.37 7.90 -39.59 -0.31 -1.68 16 18 C -0.11 -1.37 9.83 -39.55 -0.39 -1.76 16 19 C -0.04 -0.52 6.32 -39.50 -0.25 -0.77 16 20 Cl -0.08 -0.95 28.96 -51.86 -1.50 -2.45 16 21 C -0.11 -1.38 9.83 -39.55 -0.39 -1.77 16 22 C -0.09 -1.19 9.70 -39.59 -0.38 -1.57 16 23 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 24 H 0.01 0.14 6.04 -51.93 -0.31 -0.17 16 25 H 0.03 0.70 7.93 -51.93 -0.41 0.28 16 26 H 0.08 1.66 6.94 -51.93 -0.36 1.30 16 27 H 0.06 0.93 5.91 -51.93 -0.31 0.62 16 28 H 0.06 1.00 5.71 -51.93 -0.30 0.71 16 29 H 0.09 1.85 6.35 -51.93 -0.33 1.52 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.37 3.47 9.12 45.56 0.42 3.89 16 33 H 0.04 0.69 6.03 -51.93 -0.31 0.38 16 34 H 0.08 1.33 7.88 -51.93 -0.41 0.92 16 35 H 0.13 1.60 7.26 -52.49 -0.38 1.22 16 36 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 37 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 38 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 LS Contribution 325.08 15.07 4.90 4.90 Total: -1.00 -29.91 325.08 -9.38 -39.29 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -4.34 Total: 3.67 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -2.55 Total: -15.71 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: -0.38 Total: -37.00 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -0.48 Total: -8.97 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.50 Total: -2.45 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.91 -9.38 -39.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235964242.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.378 kcal (2) G-P(sol) polarization free energy of solvation -29.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds